Strain Fitness in Escherichia coli ECOR27 around NOLOHH_17835
Experiment: K5
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | K5 |
---|---|---|---|---|---|
remove | |||||
3,501,257 | + | ydhV | NOLOHH_17825 | 0.89 | +1.0 |
3,501,272 | + | ydhV | NOLOHH_17825 | 0.90 | +0.2 |
3,501,326 | + | +0.2 | |||
3,501,478 | + | +0.6 | |||
3,501,489 | + | +1.1 | |||
3,501,776 | + | ydhW | NOLOHH_17830 | 0.43 | +2.0 |
3,501,776 | + | ydhW | NOLOHH_17830 | 0.43 | +1.4 |
3,501,798 | + | ydhW | NOLOHH_17830 | 0.46 | +0.6 |
3,501,804 | + | ydhW | NOLOHH_17830 | 0.47 | +1.6 |
3,501,924 | + | ydhW | NOLOHH_17830 | 0.66 | +1.2 |
3,501,954 | + | ydhW | NOLOHH_17830 | 0.70 | -1.4 |
3,501,954 | + | ydhW | NOLOHH_17830 | 0.70 | -0.9 |
3,501,957 | + | ydhW | NOLOHH_17830 | 0.71 | +0.6 |
3,501,957 | + | ydhW | NOLOHH_17830 | 0.71 | -0.4 |
3,501,957 | + | ydhW | NOLOHH_17830 | 0.71 | +0.2 |
3,501,957 | + | ydhW | NOLOHH_17830 | 0.71 | +0.6 |
3,502,056 | + | ydhW | NOLOHH_17830 | 0.86 | -0.9 |
3,502,083 | + | +1.6 | |||
3,502,102 | + | +0.6 | |||
3,502,652 | + | NOLOHH_17835 | 0.67 | -0.9 | |
3,502,652 | + | NOLOHH_17835 | 0.67 | -1.7 | |
3,502,870 | + | -1.7 | |||
3,502,870 | + | +0.3 | |||
3,503,124 | + | ydhU | NOLOHH_17840 | 0.32 | +1.0 |
3,503,125 | - | ydhU | NOLOHH_17840 | 0.32 | +0.6 |
3,503,431 | + | ydhU | NOLOHH_17840 | 0.71 | +1.0 |
3,503,750 | + | -0.4 |
Or see this region's nucleotide sequence