Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt flhD and flhC are separated by 2 nucleotides flhC and motA are separated by 126 nucleotides motA and motB overlap by 4 nucleotides motB and cheA are separated by 4 nucleotides
NOLOHH_16540: flhD - flagellar transcriptional regulator FlhD, at 3,252,323 to 3,252,673
flhD
NOLOHH_16545: flhC - flagellar transcriptional regulator FlhC, at 3,252,676 to 3,253,254
flhC
NOLOHH_16550: motA - flagellar motor stator protein MotA, at 3,253,381 to 3,254,268
motA
NOLOHH_16555: motB - flagellar motor protein MotB, at 3,254,265 to 3,255,191
motB
NOLOHH_16560: cheA - chemotaxis protein CheA, at 3,255,196 to 3,257,160
cheA
Position (kb)
3253
3254
3255 Strain fitness (log2 ratio)
-1
0
1
2 at 3252.779 kb on + strand, within flhC at 3252.807 kb on + strand, within flhC at 3252.907 kb on - strand, within flhC at 3253.107 kb on + strand, within flhC at 3253.110 kb on + strand, within flhC at 3253.151 kb on + strand, within flhC at 3253.151 kb on + strand, within flhC at 3253.151 kb on + strand, within flhC at 3253.212 kb on + strand at 3253.253 kb on - strand at 3253.259 kb on + strand at 3253.386 kb on + strand at 3253.387 kb on - strand at 3253.391 kb on + strand at 3253.391 kb on + strand at 3253.392 kb on - strand at 3253.394 kb on + strand at 3253.394 kb on + strand at 3253.394 kb on + strand at 3253.417 kb on - strand at 3253.433 kb on - strand at 3253.465 kb on + strand at 3253.465 kb on + strand at 3253.588 kb on + strand, within motA at 3253.605 kb on + strand, within motA at 3253.605 kb on + strand, within motA at 3253.943 kb on + strand, within motA at 3254.446 kb on - strand, within motB at 3254.495 kb on + strand, within motB at 3254.498 kb on + strand, within motB at 3254.641 kb on + strand, within motB at 3254.711 kb on + strand, within motB at 3254.711 kb on + strand, within motB at 3254.711 kb on + strand, within motB at 3254.776 kb on - strand, within motB at 3254.834 kb on + strand, within motB at 3254.887 kb on - strand, within motB at 3254.888 kb on + strand, within motB at 3254.888 kb on + strand, within motB at 3254.888 kb on + strand, within motB at 3254.888 kb on + strand, within motB at 3254.888 kb on + strand, within motB at 3254.888 kb on + strand, within motB at 3254.888 kb on + strand, within motB at 3254.888 kb on + strand, within motB at 3254.888 kb on + strand, within motB at 3254.889 kb on - strand, within motB at 3254.889 kb on - strand, within motB at 3254.889 kb on - strand, within motB at 3254.889 kb on - strand, within motB at 3255.004 kb on + strand, within motB at 3255.207 kb on + strand at 3255.207 kb on + strand at 3255.207 kb on + strand at 3255.209 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 3,252,779 + flhC NOLOHH_16545 0.18 -0.0 3,252,807 + flhC NOLOHH_16545 0.23 -0.4 3,252,907 - flhC NOLOHH_16545 0.40 -1.0 3,253,107 + flhC NOLOHH_16545 0.74 -0.4 3,253,110 + flhC NOLOHH_16545 0.75 +1.0 3,253,151 + flhC NOLOHH_16545 0.82 +0.6 3,253,151 + flhC NOLOHH_16545 0.82 -0.0 3,253,151 + flhC NOLOHH_16545 0.82 +1.9 3,253,212 + +0.1 3,253,253 - +0.4 3,253,259 + +2.0 3,253,386 + -0.0 3,253,387 - -1.0 3,253,391 + +0.6 3,253,391 + -0.7 3,253,392 - +1.6 3,253,394 + -0.0 3,253,394 + +1.3 3,253,394 + +1.6 3,253,417 - +1.6 3,253,433 - -1.7 3,253,465 + -1.0 3,253,465 + +0.6 3,253,588 + motA NOLOHH_16550 0.23 -0.3 3,253,605 + motA NOLOHH_16550 0.25 -1.0 3,253,605 + motA NOLOHH_16550 0.25 -0.0 3,253,943 + motA NOLOHH_16550 0.63 -0.4 3,254,446 - motB NOLOHH_16555 0.20 +1.9 3,254,495 + motB NOLOHH_16555 0.25 -0.0 3,254,498 + motB NOLOHH_16555 0.25 +0.6 3,254,641 + motB NOLOHH_16555 0.41 +0.6 3,254,711 + motB NOLOHH_16555 0.48 +1.6 3,254,711 + motB NOLOHH_16555 0.48 +0.6 3,254,711 + motB NOLOHH_16555 0.48 -0.6 3,254,776 - motB NOLOHH_16555 0.55 -0.4 3,254,834 + motB NOLOHH_16555 0.61 +0.6 3,254,887 - motB NOLOHH_16555 0.67 -0.0 3,254,888 + motB NOLOHH_16555 0.67 +0.6 3,254,888 + motB NOLOHH_16555 0.67 -0.2 3,254,888 + motB NOLOHH_16555 0.67 +0.6 3,254,888 + motB NOLOHH_16555 0.67 +0.6 3,254,888 + motB NOLOHH_16555 0.67 -0.0 3,254,888 + motB NOLOHH_16555 0.67 +2.2 3,254,888 + motB NOLOHH_16555 0.67 -0.6 3,254,888 + motB NOLOHH_16555 0.67 +2.6 3,254,888 + motB NOLOHH_16555 0.67 +0.9 3,254,889 - motB NOLOHH_16555 0.67 +0.1 3,254,889 - motB NOLOHH_16555 0.67 +2.2 3,254,889 - motB NOLOHH_16555 0.67 -1.2 3,254,889 - motB NOLOHH_16555 0.67 +2.2 3,255,004 + motB NOLOHH_16555 0.80 -1.4 3,255,207 + -1.2 3,255,207 + +1.0 3,255,207 + +0.3 3,255,209 + -1.7
Or see this region's nucleotide sequence