Strain Fitness in Escherichia coli ECOR27 around NOLOHH_15160

Experiment: K5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdusC and yohP are separated by 387 nucleotidesyohP and mdtQ are separated by 223 nucleotides NOLOHH_15155: dusC - tRNA dihydrouridine(16) synthase DusC, at 2,973,734 to 2,974,684 dusC NOLOHH_15160: yohP - protein YohP, at 2,975,072 to 2,975,155 yohP NOLOHH_15165: mdtQ - multidrug resistance outer membrane protein MdtQ, at 2,975,379 to 2,976,815 mdtQ Position (kb) 2975 2976Strain fitness (log2 ratio) -2 -1 0 1 2at 2974.122 kb on + strand, within dusCat 2974.274 kb on - strand, within dusCat 2974.443 kb on + strand, within dusCat 2974.444 kb on - strand, within dusCat 2974.448 kb on + strand, within dusCat 2974.499 kb on + strand, within dusCat 2974.535 kb on + strand, within dusCat 2974.552 kb on + strand, within dusCat 2974.576 kb on + strand, within dusCat 2974.702 kb on - strandat 2974.723 kb on - strandat 2974.761 kb on + strandat 2974.761 kb on + strandat 2974.761 kb on + strandat 2974.762 kb on - strandat 2974.919 kb on - strandat 2974.919 kb on - strandat 2975.021 kb on - strandat 2975.021 kb on - strandat 2975.030 kb on - strandat 2975.033 kb on + strandat 2975.054 kb on - strandat 2975.054 kb on - strandat 2975.054 kb on - strandat 2975.054 kb on - strandat 2975.056 kb on - strandat 2975.056 kb on - strandat 2975.056 kb on - strandat 2975.145 kb on - strand, within yohPat 2975.191 kb on - strandat 2975.248 kb on - strandat 2975.325 kb on - strandat 2975.362 kb on + strandat 2975.647 kb on + strand, within mdtQat 2975.780 kb on + strand, within mdtQat 2975.780 kb on + strand, within mdtQat 2975.796 kb on + strand, within mdtQat 2975.882 kb on + strand, within mdtQat 2976.002 kb on - strand, within mdtQat 2976.044 kb on - strand, within mdtQat 2976.046 kb on - strand, within mdtQat 2976.046 kb on - strand, within mdtQat 2976.059 kb on + strand, within mdtQat 2976.060 kb on - strand, within mdtQat 2976.060 kb on - strand, within mdtQat 2976.060 kb on - strand, within mdtQat 2976.092 kb on + strand, within mdtQat 2976.092 kb on + strand, within mdtQ

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Per-strain Table

Position Strand Gene LocusTag Fraction K5
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2,974,122 + dusC NOLOHH_15155 0.41 +0.1
2,974,274 - dusC NOLOHH_15155 0.57 -1.0
2,974,443 + dusC NOLOHH_15155 0.75 -2.0
2,974,444 - dusC NOLOHH_15155 0.75 +0.6
2,974,448 + dusC NOLOHH_15155 0.75 +0.1
2,974,499 + dusC NOLOHH_15155 0.80 +1.2
2,974,535 + dusC NOLOHH_15155 0.84 -0.1
2,974,552 + dusC NOLOHH_15155 0.86 -1.1
2,974,576 + dusC NOLOHH_15155 0.89 +1.2
2,974,702 - +0.6
2,974,723 - +0.0
2,974,761 + +0.0
2,974,761 + -0.4
2,974,761 + -0.1
2,974,762 - +0.6
2,974,919 - +0.0
2,974,919 - -0.2
2,975,021 - +0.1
2,975,021 - +0.6
2,975,030 - +0.6
2,975,033 + +1.6
2,975,054 - -0.7
2,975,054 - -0.4
2,975,054 - -0.0
2,975,054 - +0.5
2,975,056 - -0.7
2,975,056 - +1.9
2,975,056 - +0.2
2,975,145 - yohP NOLOHH_15160 0.87 -0.7
2,975,191 - +1.6
2,975,248 - +0.1
2,975,325 - +1.6
2,975,362 + +1.0
2,975,647 + mdtQ NOLOHH_15165 0.19 +1.3
2,975,780 + mdtQ NOLOHH_15165 0.28 -2.6
2,975,780 + mdtQ NOLOHH_15165 0.28 -0.4
2,975,796 + mdtQ NOLOHH_15165 0.29 +0.6
2,975,882 + mdtQ NOLOHH_15165 0.35 -1.0
2,976,002 - mdtQ NOLOHH_15165 0.43 -0.4
2,976,044 - mdtQ NOLOHH_15165 0.46 -0.4
2,976,046 - mdtQ NOLOHH_15165 0.46 +0.6
2,976,046 - mdtQ NOLOHH_15165 0.46 +0.6
2,976,059 + mdtQ NOLOHH_15165 0.47 +1.6
2,976,060 - mdtQ NOLOHH_15165 0.47 -1.4
2,976,060 - mdtQ NOLOHH_15165 0.47 -0.4
2,976,060 - mdtQ NOLOHH_15165 0.47 +0.6
2,976,092 + mdtQ NOLOHH_15165 0.50 -0.1
2,976,092 + mdtQ NOLOHH_15165 0.50 +0.6

Or see this region's nucleotide sequence