Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt emrK and emrY overlap by 1 nucleotides emrY and dsdA are separated by 107 nucleotides
NOLOHH_14120: emrK - multidrug efflux MFS transporter periplasmic adaptor subunit EmrK, at 2,745,711 to 2,746,874
emrK
NOLOHH_14125: emrY - multidrug efflux MFS transporter permease subunit EmrY, at 2,746,874 to 2,748,412
emrY
NOLOHH_14130: dsdA - D-serine ammonia-lyase, at 2,748,520 to 2,749,848
dsdA
Position (kb)
2746
2747
2748
2749 Strain fitness (log2 ratio)
-2
-1
0
1 at 2745.920 kb on + strand, within emrK at 2746.365 kb on - strand, within emrK at 2746.478 kb on + strand, within emrK at 2746.509 kb on - strand, within emrK at 2746.722 kb on - strand, within emrK at 2746.808 kb on - strand at 2747.004 kb on + strand at 2747.065 kb on - strand, within emrY at 2747.310 kb on + strand, within emrY at 2747.448 kb on + strand, within emrY at 2747.448 kb on + strand, within emrY at 2747.864 kb on + strand, within emrY at 2747.916 kb on - strand, within emrY at 2748.172 kb on + strand, within emrY at 2748.242 kb on + strand, within emrY at 2748.242 kb on + strand, within emrY at 2748.245 kb on + strand, within emrY at 2748.307 kb on + strand at 2748.349 kb on + strand at 2748.416 kb on + strand at 2748.432 kb on + strand at 2748.439 kb on + strand at 2748.454 kb on + strand at 2748.455 kb on - strand at 2748.455 kb on - strand at 2748.455 kb on - strand at 2748.600 kb on + strand at 2748.744 kb on - strand, within dsdA at 2748.744 kb on - strand, within dsdA at 2748.768 kb on - strand, within dsdA at 2748.768 kb on - strand, within dsdA at 2748.768 kb on - strand, within dsdA at 2748.890 kb on - strand, within dsdA at 2748.907 kb on + strand, within dsdA at 2748.908 kb on - strand, within dsdA at 2748.915 kb on + strand, within dsdA at 2748.915 kb on + strand, within dsdA at 2748.915 kb on + strand, within dsdA at 2748.915 kb on + strand, within dsdA at 2748.915 kb on + strand, within dsdA at 2748.915 kb on + strand, within dsdA at 2748.916 kb on - strand, within dsdA at 2748.916 kb on - strand, within dsdA at 2748.916 kb on - strand, within dsdA at 2748.916 kb on - strand, within dsdA at 2748.916 kb on - strand, within dsdA at 2748.916 kb on - strand, within dsdA at 2749.177 kb on - strand, within dsdA at 2749.203 kb on - strand, within dsdA at 2749.281 kb on + strand, within dsdA at 2749.281 kb on + strand, within dsdA at 2749.282 kb on - strand, within dsdA at 2749.282 kb on - strand, within dsdA at 2749.282 kb on - strand, within dsdA at 2749.296 kb on + strand, within dsdA at 2749.317 kb on + strand, within dsdA
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 2,745,920 + emrK NOLOHH_14120 0.18 +0.6 2,746,365 - emrK NOLOHH_14120 0.56 -1.0 2,746,478 + emrK NOLOHH_14120 0.66 -0.4 2,746,509 - emrK NOLOHH_14120 0.69 +1.2 2,746,722 - emrK NOLOHH_14120 0.87 +0.6 2,746,808 - +1.0 2,747,004 + +0.0 2,747,065 - emrY NOLOHH_14125 0.12 +0.6 2,747,310 + emrY NOLOHH_14125 0.28 -1.7 2,747,448 + emrY NOLOHH_14125 0.37 +1.2 2,747,448 + emrY NOLOHH_14125 0.37 +0.6 2,747,864 + emrY NOLOHH_14125 0.64 -0.5 2,747,916 - emrY NOLOHH_14125 0.68 +0.6 2,748,172 + emrY NOLOHH_14125 0.84 -1.0 2,748,242 + emrY NOLOHH_14125 0.89 -0.4 2,748,242 + emrY NOLOHH_14125 0.89 +1.3 2,748,245 + emrY NOLOHH_14125 0.89 -1.4 2,748,307 + -0.1 2,748,349 + -1.4 2,748,416 + +0.1 2,748,432 + +0.3 2,748,439 + -1.7 2,748,454 + -2.4 2,748,455 - -0.4 2,748,455 - -1.1 2,748,455 - +0.6 2,748,600 + +0.3 2,748,744 - dsdA NOLOHH_14130 0.17 +0.6 2,748,744 - dsdA NOLOHH_14130 0.17 -1.3 2,748,768 - dsdA NOLOHH_14130 0.19 +0.4 2,748,768 - dsdA NOLOHH_14130 0.19 +0.8 2,748,768 - dsdA NOLOHH_14130 0.19 +0.2 2,748,890 - dsdA NOLOHH_14130 0.28 -0.4 2,748,907 + dsdA NOLOHH_14130 0.29 -0.1 2,748,908 - dsdA NOLOHH_14130 0.29 +0.6 2,748,915 + dsdA NOLOHH_14130 0.30 +0.2 2,748,915 + dsdA NOLOHH_14130 0.30 +0.6 2,748,915 + dsdA NOLOHH_14130 0.30 -0.4 2,748,915 + dsdA NOLOHH_14130 0.30 -1.1 2,748,915 + dsdA NOLOHH_14130 0.30 -0.4 2,748,915 + dsdA NOLOHH_14130 0.30 +0.6 2,748,916 - dsdA NOLOHH_14130 0.30 -0.4 2,748,916 - dsdA NOLOHH_14130 0.30 -1.4 2,748,916 - dsdA NOLOHH_14130 0.30 -0.7 2,748,916 - dsdA NOLOHH_14130 0.30 +1.2 2,748,916 - dsdA NOLOHH_14130 0.30 +0.1 2,748,916 - dsdA NOLOHH_14130 0.30 +1.0 2,749,177 - dsdA NOLOHH_14130 0.49 -1.7 2,749,203 - dsdA NOLOHH_14130 0.51 -0.1 2,749,281 + dsdA NOLOHH_14130 0.57 +0.6 2,749,281 + dsdA NOLOHH_14130 0.57 +0.6 2,749,282 - dsdA NOLOHH_14130 0.57 -1.4 2,749,282 - dsdA NOLOHH_14130 0.57 +1.0 2,749,282 - dsdA NOLOHH_14130 0.57 -0.4 2,749,296 + dsdA NOLOHH_14130 0.58 -1.0 2,749,317 + dsdA NOLOHH_14130 0.60 -1.0
Or see this region's nucleotide sequence