Strain Fitness in Escherichia coli ECOR27 around NOLOHH_11870

Experiment: K5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	K5
2,295,210	+	tas	NOLOHH_11860	0.52	-1.4
2,295,210	+	tas	NOLOHH_11860	0.52	-0.2
2,295,271	+	tas	NOLOHH_11860	0.58	-0.3
2,295,271	+	tas	NOLOHH_11860	0.58	+0.1
2,295,272	-	tas	NOLOHH_11860	0.58	-0.4
2,295,272	-	tas	NOLOHH_11860	0.58	+1.0
2,295,337	-	tas	NOLOHH_11860	0.64	+1.0
2,295,427	+	tas	NOLOHH_11860	0.73	-0.4
2,295,461	-	tas	NOLOHH_11860	0.76	-0.0
2,295,507	+	tas	NOLOHH_11860	0.80	-0.0
2,295,507	+	tas	NOLOHH_11860	0.80	+0.2
2,295,508	-	tas	NOLOHH_11860	0.81	-1.0
2,295,508	-	tas	NOLOHH_11860	0.81	-0.0
2,295,545	+	tas	NOLOHH_11860	0.84	-1.3
2,295,597	+	tas	NOLOHH_11860	0.89	-1.8
2,295,694	+				+1.6
2,295,694	+				+1.6
2,295,695	-				+1.1
2,295,702	+				+1.6
2,295,724	+				+0.6
2,295,724	+				-0.4
2,295,737	+				-1.7
2,295,738	-				+1.4
2,295,747	-				+0.1
2,295,812	-				-0.4
2,295,812	-				+0.6
2,295,885	-	ygdR	NOLOHH_11865	0.31	+0.4
2,295,885	-	ygdR	NOLOHH_11865	0.31	+1.3
2,295,965	+	ygdR	NOLOHH_11865	0.68	-0.4
2,295,966	-	ygdR	NOLOHH_11865	0.68	+0.0
2,296,015	+				+0.6
2,296,019	-				-1.2
2,296,057	-				-1.4
2,296,060	+				-0.9
2,296,060	+				-0.4
2,296,060	+				-0.1
2,296,060	+				+0.7
2,296,061	-				-0.4
2,296,061	-				+1.1
2,296,061	-				+0.3
2,296,061	-				+0.0
2,296,061	-				+0.4
2,296,061	-				-1.0
2,296,061	-				-1.3
2,296,061	-				+0.6
2,296,066	-				-0.2
2,296,066	-				+1.0
2,296,068	+				-2.3
2,296,068	+				+0.6
2,296,069	-				-0.4
2,296,090	+				+1.1
2,296,090	+				+0.1
2,296,090	+				+1.6
2,296,091	-				-0.6
2,296,091	-				+0.2
2,296,091	-				+0.1
2,296,092	+				+1.0
2,296,092	+				-0.5
2,296,092	+				+0.2
2,296,092	+				+2.0
2,296,092	+				-0.1
2,296,092	+				+0.6
2,296,093	-				-0.6
2,296,093	-				+0.9
2,296,093	-				+0.4
2,296,093	-				-2.2
2,296,093	-				-0.6
2,296,093	-				-0.4
2,296,094	+				+0.3
2,296,094	+				-0.3
2,296,095	-				+0.6
2,296,172	-				+3.7
2,296,243	+				-1.0
2,296,243	+				-1.0
2,296,244	-				-1.4
2,296,244	-				+0.9
2,296,244	-				-2.7
2,296,244	-				-1.0
2,296,244	-				-0.7
2,296,249	+	ygdQ	NOLOHH_11870	0.11	-1.8
2,296,249	+	ygdQ	NOLOHH_11870	0.11	-1.4
2,296,418	+	ygdQ	NOLOHH_11870	0.34	-0.8
2,296,418	+	ygdQ	NOLOHH_11870	0.34	-0.7
2,296,419	-	ygdQ	NOLOHH_11870	0.34	-0.0
2,296,421	+	ygdQ	NOLOHH_11870	0.35	-0.9
2,296,422	-	ygdQ	NOLOHH_11870	0.35	-0.4
2,296,475	+	ygdQ	NOLOHH_11870	0.42	-0.4
2,296,476	-	ygdQ	NOLOHH_11870	0.42	+0.1
2,296,490	+	ygdQ	NOLOHH_11870	0.44	+0.1
2,296,490	+	ygdQ	NOLOHH_11870	0.44	-1.9
2,296,490	+	ygdQ	NOLOHH_11870	0.44	-0.8
2,296,491	-	ygdQ	NOLOHH_11870	0.45	-0.4
2,296,589	+	ygdQ	NOLOHH_11870	0.58	-2.3
2,296,590	-	ygdQ	NOLOHH_11870	0.58	+1.6
2,296,652	+	ygdQ	NOLOHH_11870	0.67	-2.0
2,296,652	+	ygdQ	NOLOHH_11870	0.67	+0.6
2,296,653	-	ygdQ	NOLOHH_11870	0.67	-1.8
2,296,796	+	ygdQ	NOLOHH_11870	0.87	+0.8
2,296,797	-	ygdQ	NOLOHH_11870	0.87	+0.7
2,296,797	-	ygdQ	NOLOHH_11870	0.87	-0.0
2,296,881	+				+0.1
2,296,888	+				+1.1
2,296,889	-				+2.1
2,296,918	-				+0.3
2,296,921	+				-1.3
2,296,921	+				+1.1
2,296,922	-				+0.4
2,296,922	-				+0.1
2,296,922	-				+1.1
2,296,922	-				-0.3
2,296,922	-				-0.9
2,296,923	+				+0.6
2,296,923	+				-2.2
2,296,923	+				+0.2
2,296,924	-				+0.6
2,296,924	-				+0.2
2,296,924	-				-0.3
2,296,982	+				-1.8
2,296,983	-				+0.1
2,297,097	-	mutH	NOLOHH_11875	0.21	-0.0
2,297,097	-	mutH	NOLOHH_11875	0.21	+2.1
2,297,103	-	mutH	NOLOHH_11875	0.21	-1.0
2,297,107	-	mutH	NOLOHH_11875	0.22	+1.9
2,297,162	+	mutH	NOLOHH_11875	0.30	-1.6
2,297,162	+	mutH	NOLOHH_11875	0.30	-0.7
2,297,163	-	mutH	NOLOHH_11875	0.30	-0.2
2,297,163	-	mutH	NOLOHH_11875	0.30	-0.4
2,297,163	-	mutH	NOLOHH_11875	0.30	-0.4
2,297,232	-	mutH	NOLOHH_11875	0.40	-0.7
2,297,232	-	mutH	NOLOHH_11875	0.40	+0.2
2,297,338	+	mutH	NOLOHH_11875	0.56	+0.3
2,297,405	-	mutH	NOLOHH_11875	0.65	+0.1
2,297,450	-	mutH	NOLOHH_11875	0.72	-1.0
2,297,450	-	mutH	NOLOHH_11875	0.72	-1.0
2,297,484	-	mutH	NOLOHH_11875	0.77	-0.0
2,297,514	-	mutH	NOLOHH_11875	0.81	-0.0
2,297,563	+	mutH	NOLOHH_11875	0.88	+1.1
2,297,563	+	mutH	NOLOHH_11875	0.88	+1.1
2,297,563	+	mutH	NOLOHH_11875	0.88	+0.1
2,297,564	-	mutH	NOLOHH_11875	0.88	-1.2
2,297,564	-	mutH	NOLOHH_11875	0.88	+0.4
2,297,564	-	mutH	NOLOHH_11875	0.88	+1.6
2,297,564	-	mutH	NOLOHH_11875	0.88	+0.6
2,297,564	-	mutH	NOLOHH_11875	0.88	+1.2
2,297,564	-	mutH	NOLOHH_11875	0.88	-0.3
2,297,564	-	mutH	NOLOHH_11875	0.88	-0.1
2,297,564	-	mutH	NOLOHH_11875	0.88	+0.2
2,297,564	-	mutH	NOLOHH_11875	0.88	-0.1
2,297,785	-				-0.2
2,297,824	+				-0.0
2,297,824	+				-0.4
2,297,825	-				-0.2
2,297,825	-				+0.3
2,297,825	-				-2.2
2,297,825	-				-0.2
2,297,873	+	ygdT	NOLOHH_11880	0.29	-0.6
2,297,873	+	ygdT	NOLOHH_11880	0.29	+0.6
2,297,886	+	ygdT	NOLOHH_11880	0.38	+0.6
2,297,886	+	ygdT	NOLOHH_11880	0.38	+0.9