Strain Fitness in Escherichia coli ECOR27 around NOLOHH_10215

Experiment: K5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdlsT and yhaM are separated by 27 nucleotidesyhaM and yhaL are separated by 211 nucleotidesyhaL and yhaK are separated by 22 nucleotides NOLOHH_10210: dlsT - putative serine transporter, at 1,969,585 to 1,970,916 dlsT NOLOHH_10215: yhaM - UPF0597 protein YhaM, at 1,970,944 to 1,972,254 yhaM NOLOHH_10220: yhaL - Uncharacterized protein YhaL, at 1,972,466 to 1,972,630 yhaL NOLOHH_10225: yhaK - Pirin-like protein YhaK, at 1,972,653 to 1,973,354 yhaK Position (kb) 1970 1971 1972 1973Strain fitness (log2 ratio) -2 -1 0 1 2at 1969.996 kb on - strand, within dlsTat 1970.006 kb on - strand, within dlsTat 1970.006 kb on - strand, within dlsTat 1970.013 kb on + strand, within dlsTat 1970.014 kb on - strand, within dlsTat 1970.014 kb on - strand, within dlsTat 1970.014 kb on - strand, within dlsTat 1970.056 kb on + strand, within dlsTat 1970.056 kb on + strand, within dlsTat 1970.057 kb on - strand, within dlsTat 1970.200 kb on + strand, within dlsTat 1970.200 kb on + strand, within dlsTat 1970.200 kb on + strand, within dlsTat 1970.200 kb on + strand, within dlsTat 1970.200 kb on + strand, within dlsTat 1970.200 kb on + strand, within dlsTat 1970.200 kb on + strand, within dlsTat 1970.200 kb on + strand, within dlsTat 1970.200 kb on + strand, within dlsTat 1970.201 kb on - strand, within dlsTat 1970.201 kb on - strand, within dlsTat 1970.201 kb on - strand, within dlsTat 1970.201 kb on - strand, within dlsTat 1970.201 kb on - strand, within dlsTat 1970.201 kb on - strand, within dlsTat 1970.250 kb on + strand, within dlsTat 1970.250 kb on + strand, within dlsTat 1970.251 kb on - strand, within dlsTat 1970.251 kb on - strand, within dlsTat 1970.253 kb on + strand, within dlsTat 1970.254 kb on - strand, within dlsTat 1970.298 kb on - strand, within dlsTat 1970.355 kb on + strand, within dlsTat 1970.355 kb on + strand, within dlsTat 1970.464 kb on + strand, within dlsTat 1970.465 kb on - strand, within dlsTat 1970.465 kb on - strand, within dlsTat 1970.475 kb on + strand, within dlsTat 1970.505 kb on + strand, within dlsTat 1970.506 kb on - strand, within dlsTat 1970.556 kb on + strand, within dlsTat 1970.556 kb on + strand, within dlsTat 1970.557 kb on - strand, within dlsTat 1970.590 kb on + strand, within dlsTat 1970.591 kb on - strand, within dlsTat 1970.591 kb on - strand, within dlsTat 1970.594 kb on + strand, within dlsTat 1970.624 kb on + strand, within dlsTat 1970.760 kb on + strand, within dlsTat 1970.760 kb on + strand, within dlsTat 1970.760 kb on + strand, within dlsTat 1970.760 kb on + strand, within dlsTat 1970.786 kb on + strandat 1970.786 kb on + strandat 1970.786 kb on + strandat 1970.787 kb on - strandat 1970.787 kb on - strandat 1970.787 kb on - strandat 1970.839 kb on + strandat 1970.839 kb on + strandat 1970.839 kb on + strandat 1970.840 kb on - strandat 1970.840 kb on - strandat 1970.840 kb on - strandat 1970.980 kb on + strandat 1970.980 kb on + strandat 1970.981 kb on - strandat 1970.981 kb on - strandat 1971.024 kb on + strandat 1971.024 kb on + strandat 1971.024 kb on + strandat 1971.025 kb on - strandat 1971.572 kb on + strand, within yhaMat 1971.621 kb on + strand, within yhaMat 1971.732 kb on + strand, within yhaMat 1971.745 kb on - strand, within yhaMat 1971.804 kb on - strand, within yhaMat 1971.804 kb on - strand, within yhaMat 1971.874 kb on + strand, within yhaMat 1971.875 kb on - strand, within yhaMat 1971.875 kb on - strand, within yhaMat 1971.875 kb on - strand, within yhaMat 1972.003 kb on - strand, within yhaMat 1972.252 kb on + strandat 1972.271 kb on - strandat 1972.398 kb on + strandat 1972.546 kb on - strand, within yhaLat 1972.625 kb on - strandat 1972.645 kb on - strandat 1972.654 kb on + strandat 1972.655 kb on - strandat 1972.669 kb on - strandat 1972.669 kb on - strandat 1972.810 kb on + strand, within yhaKat 1972.929 kb on + strand, within yhaKat 1972.930 kb on - strand, within yhaKat 1972.930 kb on - strand, within yhaKat 1972.930 kb on - strand, within yhaKat 1973.160 kb on + strand, within yhaKat 1973.245 kb on + strand, within yhaKat 1973.246 kb on - strand, within yhaK

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Per-strain Table

Position Strand Gene LocusTag Fraction K5
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1,969,996 - dlsT NOLOHH_10210 0.31 -1.0
1,970,006 - dlsT NOLOHH_10210 0.32 +0.5
1,970,006 - dlsT NOLOHH_10210 0.32 +1.0
1,970,013 + dlsT NOLOHH_10210 0.32 -0.3
1,970,014 - dlsT NOLOHH_10210 0.32 -0.0
1,970,014 - dlsT NOLOHH_10210 0.32 +1.1
1,970,014 - dlsT NOLOHH_10210 0.32 -1.4
1,970,056 + dlsT NOLOHH_10210 0.35 -0.8
1,970,056 + dlsT NOLOHH_10210 0.35 -1.8
1,970,057 - dlsT NOLOHH_10210 0.35 +0.9
1,970,200 + dlsT NOLOHH_10210 0.46 +0.1
1,970,200 + dlsT NOLOHH_10210 0.46 -1.5
1,970,200 + dlsT NOLOHH_10210 0.46 -0.4
1,970,200 + dlsT NOLOHH_10210 0.46 +0.5
1,970,200 + dlsT NOLOHH_10210 0.46 +1.8
1,970,200 + dlsT NOLOHH_10210 0.46 +1.2
1,970,200 + dlsT NOLOHH_10210 0.46 +2.5
1,970,200 + dlsT NOLOHH_10210 0.46 -0.0
1,970,200 + dlsT NOLOHH_10210 0.46 +1.0
1,970,201 - dlsT NOLOHH_10210 0.46 -0.6
1,970,201 - dlsT NOLOHH_10210 0.46 +2.5
1,970,201 - dlsT NOLOHH_10210 0.46 +0.5
1,970,201 - dlsT NOLOHH_10210 0.46 -0.2
1,970,201 - dlsT NOLOHH_10210 0.46 +1.0
1,970,201 - dlsT NOLOHH_10210 0.46 -0.0
1,970,250 + dlsT NOLOHH_10210 0.50 +0.2
1,970,250 + dlsT NOLOHH_10210 0.50 -1.0
1,970,251 - dlsT NOLOHH_10210 0.50 -0.8
1,970,251 - dlsT NOLOHH_10210 0.50 +0.1
1,970,253 + dlsT NOLOHH_10210 0.50 -0.4
1,970,254 - dlsT NOLOHH_10210 0.50 -0.3
1,970,298 - dlsT NOLOHH_10210 0.54 +1.5
1,970,355 + dlsT NOLOHH_10210 0.58 -1.3
1,970,355 + dlsT NOLOHH_10210 0.58 -0.3
1,970,464 + dlsT NOLOHH_10210 0.66 +0.5
1,970,465 - dlsT NOLOHH_10210 0.66 +0.4
1,970,465 - dlsT NOLOHH_10210 0.66 -0.8
1,970,475 + dlsT NOLOHH_10210 0.67 -0.1
1,970,505 + dlsT NOLOHH_10210 0.69 +0.5
1,970,506 - dlsT NOLOHH_10210 0.69 -1.0
1,970,556 + dlsT NOLOHH_10210 0.73 -0.1
1,970,556 + dlsT NOLOHH_10210 0.73 +0.4
1,970,557 - dlsT NOLOHH_10210 0.73 -0.3
1,970,590 + dlsT NOLOHH_10210 0.75 -0.5
1,970,591 - dlsT NOLOHH_10210 0.76 -0.3
1,970,591 - dlsT NOLOHH_10210 0.76 +1.9
1,970,594 + dlsT NOLOHH_10210 0.76 -0.7
1,970,624 + dlsT NOLOHH_10210 0.78 -0.5
1,970,760 + dlsT NOLOHH_10210 0.88 -0.3
1,970,760 + dlsT NOLOHH_10210 0.88 -1.0
1,970,760 + dlsT NOLOHH_10210 0.88 -0.3
1,970,760 + dlsT NOLOHH_10210 0.88 +0.1
1,970,786 + -0.9
1,970,786 + +0.2
1,970,786 + -0.0
1,970,787 - +1.5
1,970,787 - +0.1
1,970,787 - -0.3
1,970,839 + -0.8
1,970,839 + +1.0
1,970,839 + -1.7
1,970,840 - +0.5
1,970,840 - +0.7
1,970,840 - -0.9
1,970,980 + +0.1
1,970,980 + -1.2
1,970,981 - +0.7
1,970,981 - -0.5
1,971,024 + +1.1
1,971,024 + -0.8
1,971,024 + +0.3
1,971,025 - -0.7
1,971,572 + yhaM NOLOHH_10215 0.48 -1.2
1,971,621 + yhaM NOLOHH_10215 0.52 -0.0
1,971,732 + yhaM NOLOHH_10215 0.60 +0.3
1,971,745 - yhaM NOLOHH_10215 0.61 +1.3
1,971,804 - yhaM NOLOHH_10215 0.66 -0.1
1,971,804 - yhaM NOLOHH_10215 0.66 +0.1
1,971,874 + yhaM NOLOHH_10215 0.71 +0.8
1,971,875 - yhaM NOLOHH_10215 0.71 -0.8
1,971,875 - yhaM NOLOHH_10215 0.71 +0.0
1,971,875 - yhaM NOLOHH_10215 0.71 -0.5
1,972,003 - yhaM NOLOHH_10215 0.81 -0.5
1,972,252 + -0.3
1,972,271 - -0.0
1,972,398 + +0.5
1,972,546 - yhaL NOLOHH_10220 0.48 -0.6
1,972,625 - +1.3
1,972,645 - +0.0
1,972,654 + -0.3
1,972,655 - -1.0
1,972,669 - +1.4
1,972,669 - +0.8
1,972,810 + yhaK NOLOHH_10225 0.22 +0.1
1,972,929 + yhaK NOLOHH_10225 0.39 -2.5
1,972,930 - yhaK NOLOHH_10225 0.39 +0.3
1,972,930 - yhaK NOLOHH_10225 0.39 -1.8
1,972,930 - yhaK NOLOHH_10225 0.39 -2.3
1,973,160 + yhaK NOLOHH_10225 0.72 -0.2
1,973,245 + yhaK NOLOHH_10225 0.84 -0.5
1,973,246 - yhaK NOLOHH_10225 0.84 -0.8

Or see this region's nucleotide sequence