Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dnaA and dnaN are separated by 4 nucleotides dnaN and recF overlap by 1 nucleotides
NOLOHH_07150: dnaA - chromosomal replication initiator protein DnaA, at 1,356,024 to 1,357,427
dnaA
NOLOHH_07160: dnaN - DNA polymerase III subunit beta, at 1,357,432 to 1,358,532
dnaN
NOLOHH_07165: recF - DNA replication/repair protein RecF, at 1,358,532 to 1,359,605
recF
Position (kb)
1357
1358
1359 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1358.530 kb on + strand at 1358.530 kb on + strand at 1358.530 kb on + strand at 1358.530 kb on + strand at 1358.531 kb on - strand at 1358.531 kb on - strand at 1358.531 kb on - strand at 1358.531 kb on - strand at 1358.531 kb on - strand at 1358.593 kb on + strand at 1358.593 kb on + strand at 1358.606 kb on + strand at 1358.607 kb on - strand at 1358.617 kb on + strand at 1358.617 kb on + strand at 1358.661 kb on + strand, within recF at 1358.661 kb on + strand, within recF at 1358.661 kb on + strand, within recF at 1358.661 kb on + strand, within recF at 1358.661 kb on + strand, within recF at 1358.662 kb on - strand, within recF at 1358.662 kb on - strand, within recF at 1358.662 kb on - strand, within recF at 1358.662 kb on - strand, within recF at 1358.662 kb on - strand, within recF at 1358.662 kb on - strand, within recF at 1358.662 kb on - strand, within recF at 1358.662 kb on - strand, within recF at 1358.662 kb on - strand, within recF at 1358.662 kb on - strand, within recF at 1358.663 kb on + strand, within recF at 1358.664 kb on - strand, within recF at 1358.664 kb on - strand, within recF at 1358.840 kb on + strand, within recF at 1358.840 kb on + strand, within recF at 1358.840 kb on + strand, within recF at 1358.841 kb on - strand, within recF at 1358.841 kb on - strand, within recF at 1358.897 kb on + strand, within recF at 1358.897 kb on + strand, within recF at 1358.898 kb on - strand, within recF at 1358.898 kb on - strand, within recF at 1358.898 kb on - strand, within recF at 1358.903 kb on - strand, within recF at 1358.922 kb on + strand, within recF at 1358.923 kb on - strand, within recF at 1359.114 kb on + strand, within recF at 1359.116 kb on + strand, within recF at 1359.153 kb on - strand, within recF at 1359.219 kb on + strand, within recF at 1359.219 kb on + strand, within recF at 1359.220 kb on - strand, within recF at 1359.220 kb on - strand, within recF at 1359.239 kb on + strand, within recF at 1359.239 kb on + strand, within recF at 1359.263 kb on - strand, within recF at 1359.263 kb on - strand, within recF at 1359.267 kb on + strand, within recF at 1359.267 kb on + strand, within recF at 1359.267 kb on + strand, within recF at 1359.268 kb on - strand, within recF at 1359.268 kb on - strand, within recF at 1359.268 kb on - strand, within recF at 1359.268 kb on - strand, within recF at 1359.287 kb on + strand, within recF at 1359.298 kb on + strand, within recF at 1359.298 kb on + strand, within recF at 1359.299 kb on - strand, within recF at 1359.299 kb on - strand, within recF at 1359.332 kb on + strand, within recF at 1359.332 kb on + strand, within recF at 1359.332 kb on + strand, within recF at 1359.332 kb on + strand, within recF at 1359.332 kb on + strand, within recF at 1359.333 kb on - strand, within recF at 1359.333 kb on - strand, within recF at 1359.333 kb on - strand, within recF at 1359.353 kb on + strand, within recF at 1359.353 kb on + strand, within recF at 1359.353 kb on + strand, within recF at 1359.354 kb on - strand, within recF at 1359.373 kb on + strand, within recF at 1359.427 kb on - strand, within recF at 1359.433 kb on + strand, within recF at 1359.433 kb on + strand, within recF at 1359.434 kb on - strand, within recF at 1359.490 kb on + strand, within recF
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 1,358,530 + +0.2 1,358,530 + +0.5 1,358,530 + +1.5 1,358,530 + +0.7 1,358,531 - -0.5 1,358,531 - +0.3 1,358,531 - -0.1 1,358,531 - +0.0 1,358,531 - +0.2 1,358,593 + +1.8 1,358,593 + +0.0 1,358,606 + +0.6 1,358,607 - -0.0 1,358,617 + +0.5 1,358,617 + +0.2 1,358,661 + recF NOLOHH_07165 0.12 -0.0 1,358,661 + recF NOLOHH_07165 0.12 -3.0 1,358,661 + recF NOLOHH_07165 0.12 -1.0 1,358,661 + recF NOLOHH_07165 0.12 -0.3 1,358,661 + recF NOLOHH_07165 0.12 -0.5 1,358,662 - recF NOLOHH_07165 0.12 -0.2 1,358,662 - recF NOLOHH_07165 0.12 -0.9 1,358,662 - recF NOLOHH_07165 0.12 -0.5 1,358,662 - recF NOLOHH_07165 0.12 -0.1 1,358,662 - recF NOLOHH_07165 0.12 +1.5 1,358,662 - recF NOLOHH_07165 0.12 -1.1 1,358,662 - recF NOLOHH_07165 0.12 -0.1 1,358,662 - recF NOLOHH_07165 0.12 -0.5 1,358,662 - recF NOLOHH_07165 0.12 +0.4 1,358,662 - recF NOLOHH_07165 0.12 -0.4 1,358,663 + recF NOLOHH_07165 0.12 -0.3 1,358,664 - recF NOLOHH_07165 0.12 +0.3 1,358,664 - recF NOLOHH_07165 0.12 -0.4 1,358,840 + recF NOLOHH_07165 0.29 -1.0 1,358,840 + recF NOLOHH_07165 0.29 +0.5 1,358,840 + recF NOLOHH_07165 0.29 -0.5 1,358,841 - recF NOLOHH_07165 0.29 -0.2 1,358,841 - recF NOLOHH_07165 0.29 +0.2 1,358,897 + recF NOLOHH_07165 0.34 -0.1 1,358,897 + recF NOLOHH_07165 0.34 -0.4 1,358,898 - recF NOLOHH_07165 0.34 +0.8 1,358,898 - recF NOLOHH_07165 0.34 -0.5 1,358,898 - recF NOLOHH_07165 0.34 +0.2 1,358,903 - recF NOLOHH_07165 0.35 +0.6 1,358,922 + recF NOLOHH_07165 0.36 -0.1 1,358,923 - recF NOLOHH_07165 0.36 -0.0 1,359,114 + recF NOLOHH_07165 0.54 -1.0 1,359,116 + recF NOLOHH_07165 0.54 -0.3 1,359,153 - recF NOLOHH_07165 0.58 +0.5 1,359,219 + recF NOLOHH_07165 0.64 -1.1 1,359,219 + recF NOLOHH_07165 0.64 -0.4 1,359,220 - recF NOLOHH_07165 0.64 -2.1 1,359,220 - recF NOLOHH_07165 0.64 +1.0 1,359,239 + recF NOLOHH_07165 0.66 +0.0 1,359,239 + recF NOLOHH_07165 0.66 +0.5 1,359,263 - recF NOLOHH_07165 0.68 -0.9 1,359,263 - recF NOLOHH_07165 0.68 +0.9 1,359,267 + recF NOLOHH_07165 0.68 -0.9 1,359,267 + recF NOLOHH_07165 0.68 -0.5 1,359,267 + recF NOLOHH_07165 0.68 -1.2 1,359,268 - recF NOLOHH_07165 0.69 -0.1 1,359,268 - recF NOLOHH_07165 0.69 -0.2 1,359,268 - recF NOLOHH_07165 0.69 -1.0 1,359,268 - recF NOLOHH_07165 0.69 +0.5 1,359,287 + recF NOLOHH_07165 0.70 -0.7 1,359,298 + recF NOLOHH_07165 0.71 -1.8 1,359,298 + recF NOLOHH_07165 0.71 -1.1 1,359,299 - recF NOLOHH_07165 0.71 +0.5 1,359,299 - recF NOLOHH_07165 0.71 +0.6 1,359,332 + recF NOLOHH_07165 0.74 -1.1 1,359,332 + recF NOLOHH_07165 0.74 +0.6 1,359,332 + recF NOLOHH_07165 0.74 +0.5 1,359,332 + recF NOLOHH_07165 0.74 -0.6 1,359,332 + recF NOLOHH_07165 0.74 +1.0 1,359,333 - recF NOLOHH_07165 0.75 -0.8 1,359,333 - recF NOLOHH_07165 0.75 +1.7 1,359,333 - recF NOLOHH_07165 0.75 -0.4 1,359,353 + recF NOLOHH_07165 0.76 -0.7 1,359,353 + recF NOLOHH_07165 0.76 -0.6 1,359,353 + recF NOLOHH_07165 0.76 +0.5 1,359,354 - recF NOLOHH_07165 0.77 +0.1 1,359,373 + recF NOLOHH_07165 0.78 +0.3 1,359,427 - recF NOLOHH_07165 0.83 -0.0 1,359,433 + recF NOLOHH_07165 0.84 -0.2 1,359,433 + recF NOLOHH_07165 0.84 +0.9 1,359,434 - recF NOLOHH_07165 0.84 -0.5 1,359,490 + recF NOLOHH_07165 0.89 -1.5
Or see this region's nucleotide sequence