Strain Fitness in Escherichia coli ECOR27 around NOLOHH_07150

Experiment: K5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntrnpA and rpmH are separated by 49 nucleotidesrpmH and ysdD are separated by 229 nucleotidesysdD and dnaA are separated by 296 nucleotidesdnaA and dnaN are separated by 4 nucleotides NOLOHH_07135: rnpA - ribonuclease P protein component, at 1,354,901 to 1,355,227 rnpA NOLOHH_07140: rpmH - 50S ribosomal protein L34, at 1,355,277 to 1,355,417 rpmH NOLOHH_07145: ysdD - Protein YsdD, at 1,355,647 to 1,355,727 ysdD NOLOHH_07150: dnaA - chromosomal replication initiator protein DnaA, at 1,356,024 to 1,357,427 dnaA NOLOHH_07160: dnaN - DNA polymerase III subunit beta, at 1,357,432 to 1,358,532 dnaN Position (kb) 1356 1357 1358Strain fitness (log2 ratio) -2 -1 0 1at 1355.561 kb on - strandat 1355.600 kb on + strandat 1355.600 kb on + strandat 1355.601 kb on - strandat 1355.648 kb on + strandat 1355.650 kb on + strandat 1355.664 kb on + strand, within ysdDat 1355.692 kb on - strand, within ysdDat 1355.694 kb on + strand, within ysdDat 1355.695 kb on - strand, within ysdDat 1355.703 kb on + strand, within ysdDat 1355.719 kb on + strand, within ysdDat 1355.720 kb on - strandat 1355.720 kb on - strandat 1355.720 kb on - strandat 1355.720 kb on - strandat 1355.729 kb on - strandat 1355.749 kb on + strandat 1355.749 kb on + strandat 1355.749 kb on + strandat 1355.780 kb on + strandat 1355.781 kb on - strandat 1355.781 kb on - strandat 1355.786 kb on + strandat 1355.786 kb on + strandat 1355.813 kb on - strandat 1355.813 kb on - strandat 1355.857 kb on + strandat 1355.857 kb on + strandat 1355.862 kb on + strandat 1355.906 kb on + strandat 1355.906 kb on + strandat 1355.906 kb on + strandat 1355.906 kb on + strandat 1355.906 kb on + strandat 1355.908 kb on + strandat 1355.959 kb on + strandat 1355.959 kb on + strandat 1355.959 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction K5
remove
1,355,561 - +0.5
1,355,600 + -0.2
1,355,600 + +0.3
1,355,601 - +1.2
1,355,648 + -1.1
1,355,650 + +0.3
1,355,664 + ysdD NOLOHH_07145 0.21 -1.4
1,355,692 - ysdD NOLOHH_07145 0.56 -0.8
1,355,694 + ysdD NOLOHH_07145 0.58 -0.6
1,355,695 - ysdD NOLOHH_07145 0.59 -0.5
1,355,703 + ysdD NOLOHH_07145 0.69 -0.2
1,355,719 + ysdD NOLOHH_07145 0.89 +0.0
1,355,720 - +0.3
1,355,720 - +0.1
1,355,720 - -0.1
1,355,720 - -1.3
1,355,729 - -0.9
1,355,749 + -0.0
1,355,749 + -0.5
1,355,749 + +0.2
1,355,780 + -0.0
1,355,781 - -0.6
1,355,781 - -1.5
1,355,786 + +0.1
1,355,786 + -0.4
1,355,813 - +0.8
1,355,813 - +0.5
1,355,857 + -2.1
1,355,857 + +1.5
1,355,862 + -1.8
1,355,906 + +0.5
1,355,906 + -0.6
1,355,906 + +1.2
1,355,906 + +1.5
1,355,906 + -0.3
1,355,908 + +0.5
1,355,959 + +0.7
1,355,959 + +0.0
1,355,959 + -0.7

Or see this region's nucleotide sequence