Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fklB and ytfB are separated by 218 nucleotides ytfB and insQ are separated by 134 nucleotides
NOLOHH_04335: fklB - FKBP-type peptidyl-prolyl cis-trans isomerase, at 787,593 to 788,213
fklB
NOLOHH_04340: ytfB - cell division protein YtfB, at 788,432 to 789,070
ytfB
NOLOHH_04345: insQ - Putative RNA-guided DNA endonuclease InsQ, at 789,205 to 790,353
insQ
Position (kb) 788
789
790 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 787.673 kb on - strand, within fklB at 787.706 kb on + strand, within fklB at 787.706 kb on + strand, within fklB at 787.707 kb on - strand, within fklB at 787.834 kb on + strand, within fklB at 787.834 kb on + strand, within fklB at 787.834 kb on + strand, within fklB at 787.834 kb on + strand, within fklB at 787.834 kb on + strand, within fklB at 787.835 kb on - strand, within fklB at 787.835 kb on - strand, within fklB at 787.920 kb on - strand, within fklB at 787.920 kb on - strand, within fklB at 787.954 kb on + strand, within fklB at 787.954 kb on + strand, within fklB at 787.954 kb on + strand, within fklB at 788.090 kb on + strand, within fklB at 788.090 kb on + strand, within fklB at 788.152 kb on - strand at 788.216 kb on + strand at 788.216 kb on + strand at 788.217 kb on - strand at 788.228 kb on + strand at 788.234 kb on - strand at 788.235 kb on + strand at 788.254 kb on - strand at 788.323 kb on + strand at 788.323 kb on + strand at 788.323 kb on + strand at 788.342 kb on + strand at 788.342 kb on + strand at 788.343 kb on - strand at 788.343 kb on - strand at 788.344 kb on + strand at 788.344 kb on + strand at 788.345 kb on - strand at 788.345 kb on - strand at 788.345 kb on - strand at 788.347 kb on + strand at 788.385 kb on - strand at 788.385 kb on - strand at 788.390 kb on + strand at 788.391 kb on - strand at 788.391 kb on - strand at 788.395 kb on + strand at 788.451 kb on + strand at 788.539 kb on + strand, within ytfB at 788.539 kb on + strand, within ytfB at 788.553 kb on + strand, within ytfB at 788.553 kb on + strand, within ytfB at 788.554 kb on - strand, within ytfB at 788.554 kb on - strand, within ytfB at 788.625 kb on + strand, within ytfB at 788.630 kb on - strand, within ytfB at 788.679 kb on + strand, within ytfB at 788.680 kb on - strand, within ytfB at 788.680 kb on - strand, within ytfB at 788.680 kb on - strand, within ytfB at 788.680 kb on - strand, within ytfB at 788.731 kb on + strand, within ytfB at 788.731 kb on + strand, within ytfB at 788.731 kb on + strand, within ytfB at 788.732 kb on - strand, within ytfB at 788.732 kb on - strand, within ytfB at 788.732 kb on - strand, within ytfB at 788.732 kb on - strand, within ytfB at 788.733 kb on + strand, within ytfB at 788.734 kb on - strand, within ytfB at 788.891 kb on + strand, within ytfB at 788.891 kb on + strand, within ytfB at 788.907 kb on + strand, within ytfB at 788.908 kb on - strand, within ytfB at 789.013 kb on + strand at 789.119 kb on + strand at 789.119 kb on + strand at 789.119 kb on + strand at 789.119 kb on + strand at 789.119 kb on + strand at 789.120 kb on - strand at 789.120 kb on - strand at 789.153 kb on - strand at 789.153 kb on - strand at 789.153 kb on - strand at 789.158 kb on + strand at 789.158 kb on + strand at 789.158 kb on + strand at 789.158 kb on + strand at 789.158 kb on + strand at 789.159 kb on - strand at 789.159 kb on - strand at 789.159 kb on - strand at 789.159 kb on - strand at 789.159 kb on - strand at 789.349 kb on + strand, within insQ at 789.349 kb on + strand, within insQ at 789.366 kb on + strand, within insQ at 789.397 kb on - strand, within insQ at 789.710 kb on - strand, within insQ at 789.710 kb on - strand, within insQ at 789.907 kb on + strand, within insQ at 789.907 kb on + strand, within insQ at 789.936 kb on - strand, within insQ at 789.936 kb on - strand, within insQ
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 787,673 - fklB NOLOHH_04335 0.13 -0.4 787,706 + fklB NOLOHH_04335 0.18 +1.1 787,706 + fklB NOLOHH_04335 0.18 +0.3 787,707 - fklB NOLOHH_04335 0.18 -1.1 787,834 + fklB NOLOHH_04335 0.39 +0.9 787,834 + fklB NOLOHH_04335 0.39 +1.1 787,834 + fklB NOLOHH_04335 0.39 +0.1 787,834 + fklB NOLOHH_04335 0.39 +0.3 787,834 + fklB NOLOHH_04335 0.39 -0.3 787,835 - fklB NOLOHH_04335 0.39 +0.3 787,835 - fklB NOLOHH_04335 0.39 -1.6 787,920 - fklB NOLOHH_04335 0.53 -0.5 787,920 - fklB NOLOHH_04335 0.53 -0.3 787,954 + fklB NOLOHH_04335 0.58 -1.2 787,954 + fklB NOLOHH_04335 0.58 -1.0 787,954 + fklB NOLOHH_04335 0.58 -0.4 788,090 + fklB NOLOHH_04335 0.80 +0.5 788,090 + fklB NOLOHH_04335 0.80 -1.1 788,152 - -2.1 788,216 + +0.8 788,216 + -0.2 788,217 - +0.5 788,228 + -0.9 788,234 - -0.2 788,235 + +0.1 788,254 - +0.6 788,323 + -0.4 788,323 + -0.6 788,323 + -0.3 788,342 + -0.6 788,342 + -1.3 788,343 - +0.0 788,343 - +0.2 788,344 + -0.6 788,344 + +1.3 788,345 - -0.2 788,345 - -0.6 788,345 - -0.7 788,347 + +0.5 788,385 - +1.1 788,385 - -0.4 788,390 + +0.5 788,391 - -1.5 788,391 - -0.9 788,395 + -0.4 788,451 + -0.9 788,539 + ytfB NOLOHH_04340 0.17 -1.2 788,539 + ytfB NOLOHH_04340 0.17 +0.9 788,553 + ytfB NOLOHH_04340 0.19 -0.5 788,553 + ytfB NOLOHH_04340 0.19 +0.6 788,554 - ytfB NOLOHH_04340 0.19 -1.5 788,554 - ytfB NOLOHH_04340 0.19 -0.5 788,625 + ytfB NOLOHH_04340 0.30 +0.1 788,630 - ytfB NOLOHH_04340 0.31 -0.8 788,679 + ytfB NOLOHH_04340 0.39 +0.2 788,680 - ytfB NOLOHH_04340 0.39 -0.5 788,680 - ytfB NOLOHH_04340 0.39 +0.8 788,680 - ytfB NOLOHH_04340 0.39 -0.2 788,680 - ytfB NOLOHH_04340 0.39 -0.1 788,731 + ytfB NOLOHH_04340 0.47 -0.2 788,731 + ytfB NOLOHH_04340 0.47 -0.3 788,731 + ytfB NOLOHH_04340 0.47 +0.5 788,732 - ytfB NOLOHH_04340 0.47 +1.1 788,732 - ytfB NOLOHH_04340 0.47 -0.9 788,732 - ytfB NOLOHH_04340 0.47 +0.2 788,732 - ytfB NOLOHH_04340 0.47 -1.1 788,733 + ytfB NOLOHH_04340 0.47 -0.5 788,734 - ytfB NOLOHH_04340 0.47 +0.6 788,891 + ytfB NOLOHH_04340 0.72 +0.0 788,891 + ytfB NOLOHH_04340 0.72 +0.5 788,907 + ytfB NOLOHH_04340 0.74 +0.6 788,908 - ytfB NOLOHH_04340 0.74 +1.2 789,013 + -0.5 789,119 + +1.1 789,119 + +0.3 789,119 + +0.5 789,119 + -0.2 789,119 + -0.5 789,120 - -1.1 789,120 - +0.5 789,153 - +0.8 789,153 - +1.1 789,153 - +0.5 789,158 + -0.8 789,158 + -0.1 789,158 + -0.1 789,158 + +0.7 789,158 + -1.1 789,159 - +0.2 789,159 - -0.1 789,159 - -1.1 789,159 - +0.1 789,159 - -0.1 789,349 + insQ NOLOHH_04345 0.13 +2.1 789,349 + insQ NOLOHH_04345 0.13 +0.2 789,366 + insQ NOLOHH_04345 0.14 +3.0 789,397 - insQ NOLOHH_04345 0.17 -0.7 789,710 - insQ NOLOHH_04345 0.44 -0.7 789,710 - insQ NOLOHH_04345 0.44 +0.1 789,907 + insQ NOLOHH_04345 0.61 -0.1 789,907 + insQ NOLOHH_04345 0.61 +0.2 789,936 - insQ NOLOHH_04345 0.64 -0.0 789,936 - insQ NOLOHH_04345 0.64 -1.5
Or see this region's nucleotide sequence