Strain Fitness in Escherichia coli ECOR27 around NOLOHH_03950
Experiment: K5
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | K5 |
---|---|---|---|---|---|
remove | |||||
709,720 | + | +0.5 | |||
709,855 | - | +0.5 | |||
709,980 | - | +0.9 | |||
710,062 | + | nanC | NOLOHH_03945 | 0.16 | +0.3 |
710,197 | + | nanC | NOLOHH_03945 | 0.35 | -0.1 |
710,285 | + | nanC | NOLOHH_03945 | 0.47 | -1.7 |
710,286 | - | nanC | NOLOHH_03945 | 0.47 | +0.5 |
710,286 | - | nanC | NOLOHH_03945 | 0.47 | -1.1 |
710,414 | - | nanC | NOLOHH_03945 | 0.65 | -2.7 |
710,422 | + | nanC | NOLOHH_03945 | 0.66 | +0.0 |
710,423 | - | nanC | NOLOHH_03945 | 0.66 | -0.8 |
710,423 | - | nanC | NOLOHH_03945 | 0.66 | -0.5 |
710,427 | + | nanC | NOLOHH_03945 | 0.67 | +1.2 |
710,430 | + | nanC | NOLOHH_03945 | 0.67 | +0.3 |
710,431 | - | nanC | NOLOHH_03945 | 0.67 | -0.1 |
710,434 | - | nanC | NOLOHH_03945 | 0.68 | -0.5 |
710,467 | + | nanC | NOLOHH_03945 | 0.72 | +0.7 |
710,545 | - | nanC | NOLOHH_03945 | 0.83 | +0.5 |
710,570 | + | nanC | NOLOHH_03945 | 0.87 | -0.2 |
710,571 | - | nanC | NOLOHH_03945 | 0.87 | -0.3 |
710,576 | - | nanC | NOLOHH_03945 | 0.88 | -1.1 |
710,616 | + | -0.8 | |||
710,617 | - | +1.7 | |||
710,770 | + | -0.9 | |||
710,807 | + | nanM | NOLOHH_03950 | 0.11 | -0.5 |
710,807 | + | nanM | NOLOHH_03950 | 0.11 | -0.2 |
710,808 | - | nanM | NOLOHH_03950 | 0.11 | +0.2 |
710,840 | + | nanM | NOLOHH_03950 | 0.14 | -0.2 |
710,929 | + | nanM | NOLOHH_03950 | 0.22 | -1.1 |
711,011 | + | nanM | NOLOHH_03950 | 0.30 | -0.2 |
711,012 | - | nanM | NOLOHH_03950 | 0.30 | +0.5 |
711,012 | - | nanM | NOLOHH_03950 | 0.30 | -1.2 |
711,029 | - | nanM | NOLOHH_03950 | 0.31 | -1.8 |
711,037 | + | nanM | NOLOHH_03950 | 0.32 | -0.7 |
711,104 | + | nanM | NOLOHH_03950 | 0.38 | +0.5 |
711,104 | + | nanM | NOLOHH_03950 | 0.38 | -0.2 |
711,185 | - | nanM | NOLOHH_03950 | 0.45 | +0.5 |
711,185 | - | nanM | NOLOHH_03950 | 0.45 | -1.5 |
711,185 | - | nanM | NOLOHH_03950 | 0.45 | -0.8 |
711,305 | + | nanM | NOLOHH_03950 | 0.56 | -1.5 |
711,356 | - | nanM | NOLOHH_03950 | 0.61 | +1.4 |
711,507 | + | nanM | NOLOHH_03950 | 0.74 | +0.4 |
711,508 | - | nanM | NOLOHH_03950 | 0.74 | +0.5 |
711,595 | + | nanM | NOLOHH_03950 | 0.82 | -1.1 |
711,688 | + | -0.5 | |||
711,788 | + | +0.3 | |||
711,829 | + | -0.5 | |||
711,880 | - | -0.9 | |||
711,883 | - | -0.5 | |||
711,885 | + | -0.6 | |||
711,885 | + | +1.3 | |||
711,886 | - | +0.1 | |||
711,886 | - | +0.5 | |||
711,917 | + | +0.2 | |||
712,001 | + | nanS | NOLOHH_03955 | 0.15 | +0.1 |
712,149 | - | nanS | NOLOHH_03955 | 0.30 | -0.1 |
712,149 | - | nanS | NOLOHH_03955 | 0.30 | -1.7 |
712,163 | - | nanS | NOLOHH_03955 | 0.31 | +0.5 |
712,163 | - | nanS | NOLOHH_03955 | 0.31 | -0.1 |
712,172 | + | nanS | NOLOHH_03955 | 0.32 | -0.5 |
712,172 | + | nanS | NOLOHH_03955 | 0.32 | -1.1 |
712,251 | + | nanS | NOLOHH_03955 | 0.40 | -0.2 |
712,251 | + | nanS | NOLOHH_03955 | 0.40 | +0.2 |
712,252 | - | nanS | NOLOHH_03955 | 0.40 | +0.2 |
712,322 | - | nanS | NOLOHH_03955 | 0.48 | -0.5 |
712,378 | + | nanS | NOLOHH_03955 | 0.53 | +0.5 |
712,405 | + | nanS | NOLOHH_03955 | 0.56 | +0.5 |
712,442 | + | nanS | NOLOHH_03955 | 0.60 | +0.9 |
712,443 | - | nanS | NOLOHH_03955 | 0.60 | +1.1 |
712,443 | - | nanS | NOLOHH_03955 | 0.60 | +1.5 |
712,449 | - | nanS | NOLOHH_03955 | 0.61 | +0.5 |
712,500 | - | nanS | NOLOHH_03955 | 0.66 | +1.2 |
712,502 | + | nanS | NOLOHH_03955 | 0.66 | -0.5 |
712,503 | - | nanS | NOLOHH_03955 | 0.66 | -0.1 |
712,570 | - | nanS | NOLOHH_03955 | 0.73 | +0.5 |
712,578 | - | nanS | NOLOHH_03955 | 0.74 | +1.0 |
712,578 | - | nanS | NOLOHH_03955 | 0.74 | +0.5 |
712,582 | - | nanS | NOLOHH_03955 | 0.74 | +0.2 |
712,598 | + | nanS | NOLOHH_03955 | 0.76 | +1.0 |
712,607 | - | nanS | NOLOHH_03955 | 0.77 | -0.7 |
712,616 | + | nanS | NOLOHH_03955 | 0.78 | -1.1 |
712,688 | - | nanS | NOLOHH_03955 | 0.85 | -0.9 |
712,702 | - | nanS | NOLOHH_03955 | 0.86 | +0.1 |
712,702 | - | nanS | NOLOHH_03955 | 0.86 | -1.7 |
Or see this region's nucleotide sequence