Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nlpE and arfB are separated by 13 nucleotides arfB and yaeQ overlap by 4 nucleotides yaeQ and yaeP are separated by 165 nucleotides yaeP and rof overlap by 14 nucleotides rof and tilS are separated by 48 nucleotides
NOLOHH_02435: nlpE - envelope stress response activation lipoprotein NlpE, at 394,410 to 395,120
nlpE
NOLOHH_02440: arfB - aminoacyl-tRNA hydrolase, at 395,134 to 395,556
arfB
NOLOHH_02445: yaeQ - Uncharacterized protein YaeQ, at 395,553 to 396,098
yaeQ
NOLOHH_02450: yaeP - YaeP family protein, at 396,264 to 396,464
yaeP
NOLOHH_02455: rof - Rho-binding antiterminator, at 396,451 to 396,711
rof
NOLOHH_02460: tilS - tRNA lysidine(34) synthetase TilS, at 396,760 to 398,058
tilS
Position (kb) 395
396
397 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 394.573 kb on + strand, within nlpE at 394.574 kb on - strand, within nlpE at 394.574 kb on - strand, within nlpE at 394.578 kb on - strand, within nlpE at 394.655 kb on + strand, within nlpE at 394.656 kb on - strand, within nlpE at 394.657 kb on + strand, within nlpE at 394.658 kb on - strand, within nlpE at 394.658 kb on - strand, within nlpE at 394.658 kb on - strand, within nlpE at 394.658 kb on - strand, within nlpE at 394.658 kb on - strand, within nlpE at 394.663 kb on + strand, within nlpE at 394.664 kb on - strand, within nlpE at 394.664 kb on - strand, within nlpE at 394.664 kb on - strand, within nlpE at 394.664 kb on - strand, within nlpE at 394.664 kb on - strand, within nlpE at 394.664 kb on - strand, within nlpE at 394.664 kb on - strand, within nlpE at 394.664 kb on - strand, within nlpE at 394.691 kb on + strand, within nlpE at 394.692 kb on - strand, within nlpE at 394.692 kb on - strand, within nlpE at 394.695 kb on + strand, within nlpE at 394.696 kb on - strand, within nlpE at 394.696 kb on - strand, within nlpE at 394.700 kb on + strand, within nlpE at 394.700 kb on + strand, within nlpE at 394.701 kb on - strand, within nlpE at 394.701 kb on - strand, within nlpE at 394.701 kb on - strand, within nlpE at 394.701 kb on - strand, within nlpE at 394.721 kb on + strand, within nlpE at 394.722 kb on - strand, within nlpE at 394.724 kb on - strand, within nlpE at 394.795 kb on + strand, within nlpE at 394.795 kb on + strand, within nlpE at 394.796 kb on - strand, within nlpE at 394.796 kb on - strand, within nlpE at 394.824 kb on + strand, within nlpE at 394.825 kb on - strand, within nlpE at 394.897 kb on + strand, within nlpE at 395.057 kb on + strand at 395.057 kb on + strand at 395.057 kb on + strand at 395.058 kb on - strand at 395.058 kb on - strand at 395.058 kb on - strand at 395.058 kb on - strand at 395.058 kb on - strand at 395.058 kb on - strand at 395.058 kb on - strand at 395.058 kb on - strand at 395.058 kb on - strand at 395.086 kb on - strand at 395.122 kb on + strand at 395.123 kb on - strand at 395.123 kb on - strand at 395.152 kb on + strand at 395.153 kb on - strand at 395.153 kb on - strand at 395.264 kb on - strand, within arfB at 395.402 kb on + strand, within arfB at 395.403 kb on - strand, within arfB at 395.403 kb on - strand, within arfB at 395.403 kb on - strand, within arfB at 395.463 kb on + strand, within arfB at 395.467 kb on - strand, within arfB at 395.582 kb on + strand at 395.583 kb on - strand at 395.674 kb on - strand, within yaeQ at 395.702 kb on - strand, within yaeQ at 395.775 kb on - strand, within yaeQ at 395.775 kb on - strand, within yaeQ at 395.777 kb on + strand, within yaeQ at 395.777 kb on + strand, within yaeQ at 395.777 kb on + strand, within yaeQ at 395.778 kb on - strand, within yaeQ at 395.778 kb on - strand, within yaeQ at 395.780 kb on - strand, within yaeQ at 395.780 kb on - strand, within yaeQ at 395.783 kb on + strand, within yaeQ at 395.784 kb on - strand, within yaeQ at 395.784 kb on - strand, within yaeQ at 395.950 kb on + strand, within yaeQ at 395.951 kb on - strand, within yaeQ at 395.981 kb on + strand, within yaeQ at 395.982 kb on - strand, within yaeQ at 396.074 kb on + strand at 396.075 kb on - strand at 396.139 kb on + strand at 396.139 kb on + strand at 396.180 kb on + strand at 396.180 kb on + strand at 396.181 kb on - strand at 396.182 kb on + strand at 396.183 kb on - strand at 396.205 kb on + strand at 396.214 kb on - strand at 396.238 kb on - strand at 396.283 kb on + strand at 396.286 kb on + strand, within yaeP at 396.322 kb on + strand, within yaeP at 396.322 kb on + strand, within yaeP at 396.323 kb on - strand, within yaeP at 396.327 kb on + strand, within yaeP at 396.420 kb on + strand, within yaeP at 396.420 kb on + strand, within yaeP at 396.421 kb on - strand, within yaeP at 396.421 kb on - strand, within yaeP at 396.436 kb on + strand, within yaeP at 396.450 kb on + strand at 396.450 kb on + strand at 396.450 kb on + strand at 396.451 kb on - strand at 396.465 kb on + strand at 396.469 kb on + strand at 396.469 kb on + strand at 396.469 kb on + strand at 396.469 kb on + strand at 396.469 kb on + strand at 396.493 kb on + strand, within rof at 396.493 kb on + strand, within rof at 396.527 kb on + strand, within rof at 396.608 kb on - strand, within rof at 396.645 kb on - strand, within rof at 396.645 kb on - strand, within rof at 396.661 kb on - strand, within rof at 396.761 kb on + strand at 396.761 kb on + strand at 396.766 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 394,573 + nlpE NOLOHH_02435 0.23 +0.5 394,574 - nlpE NOLOHH_02435 0.23 +0.7 394,574 - nlpE NOLOHH_02435 0.23 -0.0 394,578 - nlpE NOLOHH_02435 0.24 -0.4 394,655 + nlpE NOLOHH_02435 0.34 +1.0 394,656 - nlpE NOLOHH_02435 0.35 +0.7 394,657 + nlpE NOLOHH_02435 0.35 -0.5 394,658 - nlpE NOLOHH_02435 0.35 -0.8 394,658 - nlpE NOLOHH_02435 0.35 +0.3 394,658 - nlpE NOLOHH_02435 0.35 +0.1 394,658 - nlpE NOLOHH_02435 0.35 +1.5 394,658 - nlpE NOLOHH_02435 0.35 -0.5 394,663 + nlpE NOLOHH_02435 0.36 -0.2 394,664 - nlpE NOLOHH_02435 0.36 +0.4 394,664 - nlpE NOLOHH_02435 0.36 -0.7 394,664 - nlpE NOLOHH_02435 0.36 -0.2 394,664 - nlpE NOLOHH_02435 0.36 +0.5 394,664 - nlpE NOLOHH_02435 0.36 +0.2 394,664 - nlpE NOLOHH_02435 0.36 +0.9 394,664 - nlpE NOLOHH_02435 0.36 +0.2 394,664 - nlpE NOLOHH_02435 0.36 +0.5 394,691 + nlpE NOLOHH_02435 0.40 -0.0 394,692 - nlpE NOLOHH_02435 0.40 -0.9 394,692 - nlpE NOLOHH_02435 0.40 +0.1 394,695 + nlpE NOLOHH_02435 0.40 +0.5 394,696 - nlpE NOLOHH_02435 0.40 -0.0 394,696 - nlpE NOLOHH_02435 0.40 -0.7 394,700 + nlpE NOLOHH_02435 0.41 +1.7 394,700 + nlpE NOLOHH_02435 0.41 -1.5 394,701 - nlpE NOLOHH_02435 0.41 +0.4 394,701 - nlpE NOLOHH_02435 0.41 +0.1 394,701 - nlpE NOLOHH_02435 0.41 -0.1 394,701 - nlpE NOLOHH_02435 0.41 -0.2 394,721 + nlpE NOLOHH_02435 0.44 +0.5 394,722 - nlpE NOLOHH_02435 0.44 +0.8 394,724 - nlpE NOLOHH_02435 0.44 -0.9 394,795 + nlpE NOLOHH_02435 0.54 +0.5 394,795 + nlpE NOLOHH_02435 0.54 -1.0 394,796 - nlpE NOLOHH_02435 0.54 -2.2 394,796 - nlpE NOLOHH_02435 0.54 -0.1 394,824 + nlpE NOLOHH_02435 0.58 -0.5 394,825 - nlpE NOLOHH_02435 0.58 -0.5 394,897 + nlpE NOLOHH_02435 0.68 +0.5 395,057 + +1.5 395,057 + +0.5 395,057 + +0.5 395,058 - -0.2 395,058 - +2.1 395,058 - -0.0 395,058 - -0.5 395,058 - +0.9 395,058 - -1.0 395,058 - -1.5 395,058 - -0.8 395,058 - +1.5 395,086 - -0.0 395,122 + +1.1 395,123 - -0.6 395,123 - -0.5 395,152 + -0.5 395,153 - -0.5 395,153 - -0.5 395,264 - arfB NOLOHH_02440 0.31 -0.5 395,402 + arfB NOLOHH_02440 0.63 -1.3 395,403 - arfB NOLOHH_02440 0.64 -1.3 395,403 - arfB NOLOHH_02440 0.64 -1.3 395,403 - arfB NOLOHH_02440 0.64 -0.5 395,463 + arfB NOLOHH_02440 0.78 -0.5 395,467 - arfB NOLOHH_02440 0.79 +0.5 395,582 + +0.8 395,583 - +0.5 395,674 - yaeQ NOLOHH_02445 0.22 +1.5 395,702 - yaeQ NOLOHH_02445 0.27 -0.5 395,775 - yaeQ NOLOHH_02445 0.41 -1.1 395,775 - yaeQ NOLOHH_02445 0.41 +0.4 395,777 + yaeQ NOLOHH_02445 0.41 +0.9 395,777 + yaeQ NOLOHH_02445 0.41 +1.1 395,777 + yaeQ NOLOHH_02445 0.41 -0.5 395,778 - yaeQ NOLOHH_02445 0.41 -0.0 395,778 - yaeQ NOLOHH_02445 0.41 -0.7 395,780 - yaeQ NOLOHH_02445 0.42 -0.9 395,780 - yaeQ NOLOHH_02445 0.42 -1.0 395,783 + yaeQ NOLOHH_02445 0.42 +0.5 395,784 - yaeQ NOLOHH_02445 0.42 +0.1 395,784 - yaeQ NOLOHH_02445 0.42 -0.2 395,950 + yaeQ NOLOHH_02445 0.73 +0.7 395,951 - yaeQ NOLOHH_02445 0.73 -0.5 395,981 + yaeQ NOLOHH_02445 0.78 -0.6 395,982 - yaeQ NOLOHH_02445 0.79 -1.0 396,074 + -0.8 396,075 - -0.6 396,139 + +3.1 396,139 + +0.1 396,180 + -0.0 396,180 + -1.4 396,181 - -0.3 396,182 + -1.7 396,183 - -0.9 396,205 + +0.3 396,214 - +2.1 396,238 - +1.5 396,283 + -0.2 396,286 + yaeP NOLOHH_02450 0.11 +0.5 396,322 + yaeP NOLOHH_02450 0.29 +0.5 396,322 + yaeP NOLOHH_02450 0.29 -0.5 396,323 - yaeP NOLOHH_02450 0.29 -0.7 396,327 + yaeP NOLOHH_02450 0.31 +0.7 396,420 + yaeP NOLOHH_02450 0.78 -0.3 396,420 + yaeP NOLOHH_02450 0.78 +0.4 396,421 - yaeP NOLOHH_02450 0.78 -0.5 396,421 - yaeP NOLOHH_02450 0.78 +0.5 396,436 + yaeP NOLOHH_02450 0.86 -0.5 396,450 + +1.1 396,450 + +0.1 396,450 + -1.0 396,451 - +0.5 396,465 + +0.7 396,469 + +0.1 396,469 + +1.5 396,469 + -0.2 396,469 + -0.5 396,469 + -0.3 396,493 + rof NOLOHH_02455 0.16 -0.9 396,493 + rof NOLOHH_02455 0.16 +1.1 396,527 + rof NOLOHH_02455 0.29 -1.3 396,608 - rof NOLOHH_02455 0.60 +0.5 396,645 - rof NOLOHH_02455 0.74 +0.1 396,645 - rof NOLOHH_02455 0.74 -0.5 396,661 - rof NOLOHH_02455 0.80 +0.5 396,761 + +0.5 396,761 + -1.5 396,766 - +0.5
Or see this region's nucleotide sequence