Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yafT and Asp_trna are separated by 326 nucleotides Asp_trna and dnaQ are separated by 132 nucleotides dnaQ and rnhA are separated by 55 nucleotides rnhA and yafS overlap by 4 nucleotides
NOLOHH_02300: yafT - Uncharacterized lipoprotein YafT, at 370,818 to 371,603
yafT
NOLOHH_02305: Asp_trna - tRNA-Asp(gtc), at 371,930 to 372,006
_trna
NOLOHH_02310: dnaQ - DNA polymerase III subunit epsilon, at 372,139 to 372,879
dnaQ
NOLOHH_02315: rnhA - ribonuclease HI, at 372,935 to 373,402
rnhA
NOLOHH_02320: yafS - Uncharacterized protein YafS, at 373,399 to 374,121
yafS
Position (kb) 372
373 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 371.670 kb on - strand at 372.039 kb on + strand at 372.882 kb on - strand at 372.882 kb on - strand at 372.901 kb on - strand at 372.901 kb on - strand at 372.917 kb on - strand at 372.941 kb on - strand at 372.941 kb on - strand at 372.941 kb on - strand at 373.007 kb on - strand, within rnhA at 373.012 kb on - strand, within rnhA at 373.012 kb on - strand, within rnhA at 373.091 kb on - strand, within rnhA at 373.151 kb on + strand, within rnhA at 373.152 kb on - strand, within rnhA at 373.152 kb on - strand, within rnhA at 373.165 kb on + strand, within rnhA at 373.166 kb on - strand, within rnhA at 373.183 kb on + strand, within rnhA at 373.184 kb on - strand, within rnhA at 373.400 kb on + strand at 373.413 kb on + strand at 373.414 kb on - strand at 373.465 kb on - strand at 373.518 kb on + strand, within yafS at 373.518 kb on + strand, within yafS at 373.518 kb on + strand, within yafS at 373.518 kb on + strand, within yafS at 373.519 kb on - strand, within yafS at 373.525 kb on + strand, within yafS at 373.525 kb on + strand, within yafS at 373.525 kb on + strand, within yafS at 373.525 kb on + strand, within yafS at 373.525 kb on + strand, within yafS at 373.526 kb on - strand, within yafS at 373.526 kb on - strand, within yafS at 373.545 kb on + strand, within yafS at 373.558 kb on + strand, within yafS at 373.660 kb on - strand, within yafS at 373.674 kb on + strand, within yafS at 373.674 kb on + strand, within yafS at 373.675 kb on - strand, within yafS at 373.676 kb on + strand, within yafS at 373.676 kb on + strand, within yafS at 373.677 kb on - strand, within yafS at 373.827 kb on + strand, within yafS at 373.827 kb on + strand, within yafS at 373.827 kb on + strand, within yafS at 373.827 kb on + strand, within yafS at 373.827 kb on + strand, within yafS at 373.827 kb on + strand, within yafS at 373.827 kb on + strand, within yafS at 373.827 kb on + strand, within yafS at 373.827 kb on + strand, within yafS at 373.827 kb on + strand, within yafS at 373.827 kb on + strand, within yafS at 373.828 kb on - strand, within yafS at 373.828 kb on - strand, within yafS at 373.828 kb on - strand, within yafS at 373.828 kb on - strand, within yafS at 373.828 kb on - strand, within yafS at 373.828 kb on - strand, within yafS at 373.828 kb on - strand, within yafS
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 371,670 - -1.0 372,039 + -0.5 372,882 - -1.0 372,882 - +0.3 372,901 - -0.7 372,901 - -0.9 372,917 - +1.5 372,941 - +0.5 372,941 - -0.5 372,941 - -1.0 373,007 - rnhA NOLOHH_02315 0.15 +1.1 373,012 - rnhA NOLOHH_02315 0.16 -0.5 373,012 - rnhA NOLOHH_02315 0.16 -1.8 373,091 - rnhA NOLOHH_02315 0.33 +0.5 373,151 + rnhA NOLOHH_02315 0.46 -0.5 373,152 - rnhA NOLOHH_02315 0.46 +2.1 373,152 - rnhA NOLOHH_02315 0.46 -0.3 373,165 + rnhA NOLOHH_02315 0.49 -2.8 373,166 - rnhA NOLOHH_02315 0.49 -0.5 373,183 + rnhA NOLOHH_02315 0.53 -1.0 373,184 - rnhA NOLOHH_02315 0.53 -1.6 373,400 + -0.5 373,413 + -0.3 373,414 - -0.9 373,465 - +1.0 373,518 + yafS NOLOHH_02320 0.16 +0.3 373,518 + yafS NOLOHH_02320 0.16 +1.1 373,518 + yafS NOLOHH_02320 0.16 -1.2 373,518 + yafS NOLOHH_02320 0.16 -0.5 373,519 - yafS NOLOHH_02320 0.17 +1.0 373,525 + yafS NOLOHH_02320 0.17 -0.5 373,525 + yafS NOLOHH_02320 0.17 +0.5 373,525 + yafS NOLOHH_02320 0.17 +0.5 373,525 + yafS NOLOHH_02320 0.17 -0.5 373,525 + yafS NOLOHH_02320 0.17 -0.3 373,526 - yafS NOLOHH_02320 0.18 +0.5 373,526 - yafS NOLOHH_02320 0.18 -0.4 373,545 + yafS NOLOHH_02320 0.20 +0.5 373,558 + yafS NOLOHH_02320 0.22 +0.5 373,660 - yafS NOLOHH_02320 0.36 -1.0 373,674 + yafS NOLOHH_02320 0.38 +0.5 373,674 + yafS NOLOHH_02320 0.38 -1.0 373,675 - yafS NOLOHH_02320 0.38 -0.2 373,676 + yafS NOLOHH_02320 0.38 +0.1 373,676 + yafS NOLOHH_02320 0.38 -0.3 373,677 - yafS NOLOHH_02320 0.38 -0.6 373,827 + yafS NOLOHH_02320 0.59 -0.1 373,827 + yafS NOLOHH_02320 0.59 -0.6 373,827 + yafS NOLOHH_02320 0.59 -0.0 373,827 + yafS NOLOHH_02320 0.59 -0.9 373,827 + yafS NOLOHH_02320 0.59 +1.0 373,827 + yafS NOLOHH_02320 0.59 +2.1 373,827 + yafS NOLOHH_02320 0.59 +0.9 373,827 + yafS NOLOHH_02320 0.59 -0.5 373,827 + yafS NOLOHH_02320 0.59 +0.5 373,827 + yafS NOLOHH_02320 0.59 -0.5 373,827 + yafS NOLOHH_02320 0.59 +0.6 373,828 - yafS NOLOHH_02320 0.59 -0.6 373,828 - yafS NOLOHH_02320 0.59 -1.3 373,828 - yafS NOLOHH_02320 0.59 -0.8 373,828 - yafS NOLOHH_02320 0.59 -2.0 373,828 - yafS NOLOHH_02320 0.59 +0.5 373,828 - yafS NOLOHH_02320 0.59 -0.5 373,828 - yafS NOLOHH_02320 0.59 +1.1
Or see this region's nucleotide sequence