Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ecpR and ecpA are separated by 74 nucleotides ecpA and ecpB are separated by 57 nucleotides
NOLOHH_01975: ecpR - ECP biosynthesis operon DNA-binding transcriptional regulator EcpR, at 302,145 to 302,687
ecpR
NOLOHH_01980: ecpA - common pilus major fimbrillin subunit EcpA, at 302,762 to 303,349
ecpA
NOLOHH_01985: ecpB - fimbrial chaperone EcpB, at 303,407 to 304,075
ecpB
Position (kb) 302
303 Strain fitness (log2 ratio) -2
-1
0
1 at 301.157 kb on + strand at 301.160 kb on - strand at 301.160 kb on - strand at 301.160 kb on - strand at 301.160 kb on - strand at 301.252 kb on + strand at 301.252 kb on + strand at 301.253 kb on - strand at 301.253 kb on - strand at 301.253 kb on - strand at 301.275 kb on - strand at 301.339 kb on - strand at 301.339 kb on - strand at 301.347 kb on - strand at 301.355 kb on + strand at 301.368 kb on - strand at 301.368 kb on - strand at 301.368 kb on - strand at 301.368 kb on - strand at 301.376 kb on - strand at 301.376 kb on - strand at 301.376 kb on - strand at 301.444 kb on + strand at 301.462 kb on + strand at 301.463 kb on - strand at 301.570 kb on + strand at 301.570 kb on + strand at 301.570 kb on + strand at 301.571 kb on - strand at 301.571 kb on - strand at 301.571 kb on - strand at 301.571 kb on - strand at 301.571 kb on - strand at 301.571 kb on - strand at 301.615 kb on + strand at 301.616 kb on - strand at 301.616 kb on - strand at 301.699 kb on + strand at 301.700 kb on - strand at 301.702 kb on - strand at 302.096 kb on - strand at 302.202 kb on + strand, within ecpR at 302.415 kb on + strand, within ecpR at 302.582 kb on + strand, within ecpR at 302.625 kb on + strand, within ecpR at 302.626 kb on - strand, within ecpR at 302.670 kb on + strand at 302.672 kb on + strand at 302.672 kb on + strand at 302.708 kb on - strand at 302.784 kb on + strand at 302.784 kb on + strand at 302.835 kb on + strand, within ecpA at 302.835 kb on + strand, within ecpA at 302.930 kb on + strand, within ecpA at 302.931 kb on - strand, within ecpA at 302.953 kb on + strand, within ecpA at 302.954 kb on - strand, within ecpA at 302.970 kb on + strand, within ecpA at 302.971 kb on - strand, within ecpA at 303.014 kb on - strand, within ecpA at 303.032 kb on - strand, within ecpA at 303.046 kb on - strand, within ecpA at 303.092 kb on + strand, within ecpA at 303.093 kb on - strand, within ecpA at 303.095 kb on - strand, within ecpA at 303.170 kb on - strand, within ecpA at 303.189 kb on - strand, within ecpA at 303.189 kb on - strand, within ecpA at 303.259 kb on + strand, within ecpA at 303.279 kb on - strand, within ecpA at 303.321 kb on + strand at 303.321 kb on + strand at 303.347 kb on + strand at 303.347 kb on + strand at 303.347 kb on + strand at 303.348 kb on - strand at 303.348 kb on - strand at 303.406 kb on + strand at 303.481 kb on + strand, within ecpB at 303.482 kb on - strand, within ecpB at 303.482 kb on - strand, within ecpB at 303.482 kb on - strand, within ecpB at 303.483 kb on + strand, within ecpB at 303.483 kb on + strand, within ecpB at 303.484 kb on - strand, within ecpB at 303.557 kb on - strand, within ecpB at 303.607 kb on + strand, within ecpB at 303.636 kb on + strand, within ecpB at 303.637 kb on - strand, within ecpB
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 301,157 + +0.6 301,160 - +0.2 301,160 - +0.6 301,160 - +1.0 301,160 - -1.9 301,252 + -0.2 301,252 + +0.9 301,253 - -1.4 301,253 - +1.5 301,253 - +0.6 301,275 - +0.1 301,339 - -0.2 301,339 - -1.3 301,347 - +0.2 301,355 + +1.6 301,368 - +0.0 301,368 - +1.3 301,368 - -0.2 301,368 - -0.3 301,376 - -1.4 301,376 - -1.4 301,376 - -0.1 301,444 + -0.0 301,462 + +0.8 301,463 - +0.7 301,570 + -0.0 301,570 + +1.1 301,570 + +0.6 301,571 - -0.7 301,571 - +0.4 301,571 - -0.0 301,571 - -0.4 301,571 - +0.1 301,571 - -0.4 301,615 + +1.2 301,616 - +1.1 301,616 - -1.4 301,699 + +1.6 301,700 - -0.3 301,702 - -0.3 302,096 - -1.4 302,202 + ecpR NOLOHH_01975 0.10 -0.9 302,415 + ecpR NOLOHH_01975 0.50 -0.0 302,582 + ecpR NOLOHH_01975 0.80 -0.2 302,625 + ecpR NOLOHH_01975 0.88 +0.8 302,626 - ecpR NOLOHH_01975 0.89 -0.0 302,670 + +0.2 302,672 + -0.6 302,672 + -0.9 302,708 - -1.0 302,784 + -0.3 302,784 + +0.6 302,835 + ecpA NOLOHH_01980 0.12 -0.6 302,835 + ecpA NOLOHH_01980 0.12 -0.2 302,930 + ecpA NOLOHH_01980 0.29 -1.9 302,931 - ecpA NOLOHH_01980 0.29 +0.1 302,953 + ecpA NOLOHH_01980 0.32 -0.9 302,954 - ecpA NOLOHH_01980 0.33 +0.1 302,970 + ecpA NOLOHH_01980 0.35 -0.6 302,971 - ecpA NOLOHH_01980 0.36 +1.3 303,014 - ecpA NOLOHH_01980 0.43 +0.4 303,032 - ecpA NOLOHH_01980 0.46 +0.1 303,046 - ecpA NOLOHH_01980 0.48 +0.6 303,092 + ecpA NOLOHH_01980 0.56 +0.1 303,093 - ecpA NOLOHH_01980 0.56 +0.6 303,095 - ecpA NOLOHH_01980 0.57 -0.8 303,170 - ecpA NOLOHH_01980 0.69 +0.9 303,189 - ecpA NOLOHH_01980 0.73 +0.3 303,189 - ecpA NOLOHH_01980 0.73 -1.2 303,259 + ecpA NOLOHH_01980 0.85 -0.0 303,279 - ecpA NOLOHH_01980 0.88 -0.1 303,321 + +0.1 303,321 + +0.8 303,347 + -1.6 303,347 + -0.7 303,347 + -0.7 303,348 - -1.0 303,348 - -1.4 303,406 + +0.6 303,481 + ecpB NOLOHH_01985 0.11 -0.1 303,482 - ecpB NOLOHH_01985 0.11 -1.2 303,482 - ecpB NOLOHH_01985 0.11 -0.2 303,482 - ecpB NOLOHH_01985 0.11 +0.6 303,483 + ecpB NOLOHH_01985 0.11 -1.4 303,483 + ecpB NOLOHH_01985 0.11 -0.6 303,484 - ecpB NOLOHH_01985 0.12 +1.2 303,557 - ecpB NOLOHH_01985 0.22 -0.3 303,607 + ecpB NOLOHH_01985 0.30 -0.0 303,636 + ecpB NOLOHH_01985 0.34 +0.8 303,637 - ecpB NOLOHH_01985 0.34 -0.7
Or see this region's nucleotide sequence