Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt betA and NOLOHH_01905 are separated by 212 nucleotides NOLOHH_01905 and lutC are separated by 245 nucleotides lutC and ykgF overlap by 8 nucleotides
NOLOHH_01900: betA - choline dehydrogenase, at 283,047 to 284,717
betA
NOLOHH_01905: NOLOHH_01905 - Uncharacterized protein YkgH, at 284,930 to 285,595
_01905
NOLOHH_01910: lutC - lactate utilization protein C, at 285,841 to 286,536
lutC
NOLOHH_01915: ykgF - LutB/LldF family L-lactate oxidation iron-sulfur protein, at 286,529 to 287,956
ykgF
Position (kb) 284
285
286 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 283.953 kb on + strand, within betA at 283.953 kb on + strand, within betA at 283.953 kb on + strand, within betA at 283.953 kb on + strand, within betA at 283.953 kb on + strand, within betA at 283.953 kb on + strand, within betA at 283.954 kb on - strand, within betA at 283.954 kb on - strand, within betA at 283.954 kb on - strand, within betA at 283.954 kb on - strand, within betA at 283.954 kb on - strand, within betA at 283.963 kb on - strand, within betA at 284.090 kb on + strand, within betA at 284.091 kb on - strand, within betA at 284.157 kb on + strand, within betA at 284.243 kb on + strand, within betA at 284.286 kb on + strand, within betA at 284.286 kb on + strand, within betA at 284.286 kb on + strand, within betA at 284.286 kb on + strand, within betA at 284.286 kb on + strand, within betA at 284.286 kb on + strand, within betA at 284.287 kb on - strand, within betA at 284.287 kb on - strand, within betA at 284.287 kb on - strand, within betA at 284.287 kb on - strand, within betA at 284.287 kb on - strand, within betA at 284.287 kb on - strand, within betA at 284.568 kb on - strand at 284.579 kb on + strand at 284.579 kb on + strand at 284.609 kb on + strand at 284.609 kb on + strand at 284.610 kb on - strand at 284.610 kb on - strand at 284.610 kb on - strand at 284.677 kb on - strand at 284.732 kb on + strand at 284.760 kb on + strand at 284.789 kb on + strand at 284.790 kb on - strand at 284.791 kb on + strand at 284.791 kb on + strand at 284.794 kb on - strand at 284.927 kb on - strand at 285.231 kb on + strand, within NOLOHH_01905 at 285.285 kb on + strand, within NOLOHH_01905 at 285.329 kb on + strand, within NOLOHH_01905 at 285.629 kb on + strand at 285.697 kb on + strand at 285.801 kb on + strand at 285.833 kb on + strand at 285.834 kb on - strand at 285.864 kb on - strand at 285.945 kb on + strand, within lutC at 286.023 kb on + strand, within lutC at 286.024 kb on - strand, within lutC at 286.033 kb on - strand, within lutC at 286.033 kb on - strand, within lutC at 286.124 kb on - strand, within lutC at 286.139 kb on + strand, within lutC at 286.140 kb on - strand, within lutC at 286.140 kb on - strand, within lutC at 286.155 kb on + strand, within lutC at 286.303 kb on - strand, within lutC at 286.313 kb on - strand, within lutC at 286.365 kb on + strand, within lutC at 286.366 kb on - strand, within lutC at 286.366 kb on - strand, within lutC at 286.366 kb on - strand, within lutC at 286.366 kb on - strand, within lutC at 286.413 kb on + strand, within lutC at 286.439 kb on + strand, within lutC at 286.440 kb on - strand, within lutC at 286.440 kb on - strand, within lutC at 286.440 kb on - strand, within lutC at 286.440 kb on - strand, within lutC at 286.440 kb on - strand, within lutC at 286.565 kb on - strand at 286.574 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 283,953 + betA NOLOHH_01900 0.54 -0.8 283,953 + betA NOLOHH_01900 0.54 -0.8 283,953 + betA NOLOHH_01900 0.54 +0.6 283,953 + betA NOLOHH_01900 0.54 -0.4 283,953 + betA NOLOHH_01900 0.54 +0.3 283,953 + betA NOLOHH_01900 0.54 +0.6 283,954 - betA NOLOHH_01900 0.54 +0.6 283,954 - betA NOLOHH_01900 0.54 -0.7 283,954 - betA NOLOHH_01900 0.54 -0.2 283,954 - betA NOLOHH_01900 0.54 -0.4 283,954 - betA NOLOHH_01900 0.54 +0.6 283,963 - betA NOLOHH_01900 0.55 -1.7 284,090 + betA NOLOHH_01900 0.62 -0.4 284,091 - betA NOLOHH_01900 0.62 +1.0 284,157 + betA NOLOHH_01900 0.66 -0.4 284,243 + betA NOLOHH_01900 0.72 -0.0 284,286 + betA NOLOHH_01900 0.74 -0.2 284,286 + betA NOLOHH_01900 0.74 -1.7 284,286 + betA NOLOHH_01900 0.74 +2.6 284,286 + betA NOLOHH_01900 0.74 +0.1 284,286 + betA NOLOHH_01900 0.74 +0.6 284,286 + betA NOLOHH_01900 0.74 -0.4 284,287 - betA NOLOHH_01900 0.74 +0.6 284,287 - betA NOLOHH_01900 0.74 +0.8 284,287 - betA NOLOHH_01900 0.74 +0.1 284,287 - betA NOLOHH_01900 0.74 -1.8 284,287 - betA NOLOHH_01900 0.74 +0.3 284,287 - betA NOLOHH_01900 0.74 +1.6 284,568 - -0.4 284,579 + -1.0 284,579 + -0.6 284,609 + +1.3 284,609 + +0.1 284,610 - -0.0 284,610 - +1.2 284,610 - -0.9 284,677 - +0.9 284,732 + +0.6 284,760 + +0.6 284,789 + -2.2 284,790 - -0.2 284,791 + +0.6 284,791 + +1.2 284,794 - +3.2 284,927 - +0.6 285,231 + NOLOHH_01905 0.45 +0.1 285,285 + NOLOHH_01905 0.53 +2.2 285,329 + NOLOHH_01905 0.60 +0.6 285,629 + -0.1 285,697 + +1.4 285,801 + +0.6 285,833 + -0.6 285,834 - +0.7 285,864 - +0.4 285,945 + lutC NOLOHH_01910 0.15 +1.0 286,023 + lutC NOLOHH_01910 0.26 +0.6 286,024 - lutC NOLOHH_01910 0.26 +1.2 286,033 - lutC NOLOHH_01910 0.28 +1.6 286,033 - lutC NOLOHH_01910 0.28 -0.3 286,124 - lutC NOLOHH_01910 0.41 +0.6 286,139 + lutC NOLOHH_01910 0.43 +0.6 286,140 - lutC NOLOHH_01910 0.43 +0.6 286,140 - lutC NOLOHH_01910 0.43 +0.4 286,155 + lutC NOLOHH_01910 0.45 +1.6 286,303 - lutC NOLOHH_01910 0.66 -1.0 286,313 - lutC NOLOHH_01910 0.68 +1.6 286,365 + lutC NOLOHH_01910 0.75 +0.2 286,366 - lutC NOLOHH_01910 0.75 +0.5 286,366 - lutC NOLOHH_01910 0.75 -0.6 286,366 - lutC NOLOHH_01910 0.75 +1.0 286,366 - lutC NOLOHH_01910 0.75 +0.8 286,413 + lutC NOLOHH_01910 0.82 +1.6 286,439 + lutC NOLOHH_01910 0.86 +0.2 286,440 - lutC NOLOHH_01910 0.86 -0.4 286,440 - lutC NOLOHH_01910 0.86 -0.4 286,440 - lutC NOLOHH_01910 0.86 -1.3 286,440 - lutC NOLOHH_01910 0.86 -1.4 286,440 - lutC NOLOHH_01910 0.86 -0.4 286,565 - -0.1 286,574 - -2.7
Or see this region's nucleotide sequence