Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_00515 and NOLOHH_00520 are separated by 15 nucleotides NOLOHH_00520 and NOLOHH_00525 are separated by 7 nucleotides NOLOHH_00525 and NOLOHH_00530 overlap by 4 nucleotides NOLOHH_00530 and fII are separated by 11 nucleotides fII and NOLOHH_00540 are separated by 11 nucleotides
NOLOHH_00515: NOLOHH_00515 - Phage minor tail protein G, at 8,328 to 8,750
_00515
NOLOHH_00520: NOLOHH_00520 - Tail tube protein, at 8,766 to 9,506
_00520
NOLOHH_00525: NOLOHH_00525 - Tail tube terminator protein, at 9,514 to 9,909
_00525
NOLOHH_00530: NOLOHH_00530 - Tail completion protein Z, at 9,906 to 10,484
_00530
NOLOHH_00535: fII - Head-tail connector protein FII, at 10,496 to 10,849
fII
NOLOHH_00540: NOLOHH_00540 - DNA-packaging protein FI, at 10,861 to 11,259
_00540
Position (kb) 9
10 Strain fitness (log2 ratio) -2
-1
0
1
2 at 8.567 kb on + strand, within NOLOHH_00515 at 8.568 kb on - strand, within NOLOHH_00515 at 8.568 kb on - strand, within NOLOHH_00515 at 8.568 kb on - strand, within NOLOHH_00515 at 8.568 kb on - strand, within NOLOHH_00515 at 8.610 kb on - strand, within NOLOHH_00515 at 8.841 kb on - strand, within NOLOHH_00520 at 9.038 kb on + strand, within NOLOHH_00520 at 9.489 kb on - strand at 9.528 kb on + strand at 9.528 kb on + strand at 9.528 kb on + strand at 9.528 kb on + strand at 9.654 kb on - strand, within NOLOHH_00525 at 9.999 kb on - strand, within NOLOHH_00530 at 10.236 kb on + strand, within NOLOHH_00530 at 10.236 kb on + strand, within NOLOHH_00530 at 10.237 kb on - strand, within NOLOHH_00530 at 10.581 kb on - strand, within fII
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 8,567 + NOLOHH_00515 0.57 +0.9 8,568 - NOLOHH_00515 0.57 -0.4 8,568 - NOLOHH_00515 0.57 -0.8 8,568 - NOLOHH_00515 0.57 -0.4 8,568 - NOLOHH_00515 0.57 +0.6 8,610 - NOLOHH_00515 0.67 -1.9 8,841 - NOLOHH_00520 0.10 +0.5 9,038 + NOLOHH_00520 0.37 -0.1 9,489 - -0.1 9,528 + -1.1 9,528 + +1.0 9,528 + +2.6 9,528 + +1.2 9,654 - NOLOHH_00525 0.35 -0.8 9,999 - NOLOHH_00530 0.16 +0.2 10,236 + NOLOHH_00530 0.57 +0.6 10,236 + NOLOHH_00530 0.57 -1.3 10,237 - NOLOHH_00530 0.57 +0.2 10,581 - fII NOLOHH_00535 0.24 +0.0
Or see this region's nucleotide sequence