Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_00420 and NOLOHH_00425 are separated by 107 nucleotides NOLOHH_00425 and NOLOHH_00430 are separated by 420 nucleotides NOLOHH_00430 and NOLOHH_00435 are separated by 61 nucleotides NOLOHH_00435 and NOLOHH_00440 are separated by 36 nucleotides NOLOHH_00440 and NOLOHH_00445 are separated by 90 nucleotides
NOLOHH_00420: NOLOHH_00420 - hypothetical protein, at 27,957 to 28,409
_00420
NOLOHH_00425: NOLOHH_00425 - excisionase, at 28,517 to 28,894
_00425
NOLOHH_00430: NOLOHH_00430 - Putative integral membrane protein, at 29,315 to 29,530
_00430
NOLOHH_00435: NOLOHH_00435 - hypothetical protein, at 29,592 to 29,876
_00435
NOLOHH_00440: NOLOHH_00440 - hypothetical protein, at 29,913 to 30,215
_00440
NOLOHH_00445: NOLOHH_00445 - peptidyl-arginine deiminase, at 30,306 to 30,965
_00445
Position (kb) 29
30 Strain fitness (log2 ratio) -1
0
1
2
3 at 28.360 kb on + strand, within NOLOHH_00420 at 28.451 kb on - strand at 28.539 kb on + strand at 28.557 kb on + strand, within NOLOHH_00425 at 28.584 kb on + strand, within NOLOHH_00425 at 28.584 kb on + strand, within NOLOHH_00425 at 29.102 kb on - strand at 29.148 kb on + strand at 29.190 kb on + strand at 29.322 kb on - strand at 29.426 kb on + strand, within NOLOHH_00430 at 29.474 kb on - strand, within NOLOHH_00430 at 29.474 kb on - strand, within NOLOHH_00430 at 29.474 kb on - strand, within NOLOHH_00430 at 29.530 kb on + strand at 29.664 kb on + strand, within NOLOHH_00435 at 29.664 kb on + strand, within NOLOHH_00435 at 29.664 kb on + strand, within NOLOHH_00435 at 29.668 kb on + strand, within NOLOHH_00435 at 29.669 kb on - strand, within NOLOHH_00435 at 29.705 kb on - strand, within NOLOHH_00435 at 29.723 kb on - strand, within NOLOHH_00435 at 29.730 kb on + strand, within NOLOHH_00435 at 29.731 kb on - strand, within NOLOHH_00435 at 29.788 kb on - strand, within NOLOHH_00435 at 29.789 kb on + strand, within NOLOHH_00435 at 29.790 kb on - strand, within NOLOHH_00435 at 29.790 kb on - strand, within NOLOHH_00435 at 29.882 kb on + strand at 29.910 kb on - strand at 29.915 kb on - strand at 30.262 kb on - strand at 30.273 kb on - strand at 30.273 kb on - strand at 30.273 kb on - strand at 30.277 kb on - strand at 30.423 kb on - strand, within NOLOHH_00445 at 30.431 kb on - strand, within NOLOHH_00445 at 30.431 kb on - strand, within NOLOHH_00445 at 30.431 kb on - strand, within NOLOHH_00445 at 30.431 kb on - strand, within NOLOHH_00445 at 30.431 kb on - strand, within NOLOHH_00445
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 28,360 + NOLOHH_00420 0.89 -1.1 28,451 - +0.4 28,539 + +1.2 28,557 + NOLOHH_00425 0.11 -1.0 28,584 + NOLOHH_00425 0.18 -0.3 28,584 + NOLOHH_00425 0.18 -1.2 29,102 - -0.5 29,148 + +0.4 29,190 + +0.5 29,322 - -0.1 29,426 + NOLOHH_00430 0.51 +0.1 29,474 - NOLOHH_00430 0.74 +0.7 29,474 - NOLOHH_00430 0.74 +0.5 29,474 - NOLOHH_00430 0.74 -0.2 29,530 + -0.3 29,664 + NOLOHH_00435 0.25 -0.6 29,664 + NOLOHH_00435 0.25 -0.4 29,664 + NOLOHH_00435 0.25 -0.3 29,668 + NOLOHH_00435 0.27 -0.6 29,669 - NOLOHH_00435 0.27 -1.2 29,705 - NOLOHH_00435 0.40 +0.2 29,723 - NOLOHH_00435 0.46 -0.2 29,730 + NOLOHH_00435 0.48 +0.3 29,731 - NOLOHH_00435 0.49 -0.5 29,788 - NOLOHH_00435 0.69 +0.3 29,789 + NOLOHH_00435 0.69 +0.3 29,790 - NOLOHH_00435 0.69 +0.2 29,790 - NOLOHH_00435 0.69 -0.1 29,882 + -0.2 29,910 - -1.5 29,915 - +0.6 30,262 - +0.4 30,273 - +0.0 30,273 - -0.1 30,273 - +1.2 30,277 - -0.2 30,423 - NOLOHH_00445 0.18 +2.0 30,431 - NOLOHH_00445 0.19 -0.0 30,431 - NOLOHH_00445 0.19 +2.6 30,431 - NOLOHH_00445 0.19 +0.4 30,431 - NOLOHH_00445 0.19 -1.4 30,431 - NOLOHH_00445 0.19 +3.0
Or see this region's nucleotide sequence