Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_00395 and NOLOHH_00400 are separated by 596 nucleotides NOLOHH_00400 and hipB are separated by 14 nucleotides hipB and NOLOHH_00410 overlap by 20 nucleotides
NOLOHH_00395: NOLOHH_00395 - molecular chaperone DnaJ, at 23,681 to 24,196
_00395
NOLOHH_00400: NOLOHH_00400 - DNA-binding protein, at 24,793 to 25,119
_00400
NOLOHH_00405: hipB - XRE family transcriptional regulator, at 25,134 to 25,415
hipB
NOLOHH_00410: NOLOHH_00410 - type II toxin-antitoxin system RelE/ParE family toxin, at 25,396 to 25,725
_00410
Position (kb) 25
26 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 24.177 kb on - strand at 24.296 kb on - strand at 24.376 kb on + strand at 24.376 kb on + strand at 24.377 kb on - strand at 24.380 kb on + strand at 24.380 kb on + strand at 24.381 kb on - strand at 24.437 kb on - strand at 24.437 kb on - strand at 24.526 kb on + strand at 24.581 kb on - strand at 24.581 kb on - strand at 24.581 kb on - strand at 24.581 kb on - strand at 24.581 kb on - strand at 24.585 kb on + strand at 24.586 kb on - strand at 24.591 kb on + strand at 24.592 kb on - strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.608 kb on - strand at 24.608 kb on - strand at 24.608 kb on - strand at 24.613 kb on + strand at 24.614 kb on - strand at 24.626 kb on + strand at 24.626 kb on + strand at 24.626 kb on + strand at 24.626 kb on + strand at 24.627 kb on - strand at 24.627 kb on - strand at 24.627 kb on - strand at 24.627 kb on - strand at 24.631 kb on + strand at 24.703 kb on - strand at 24.703 kb on - strand at 24.706 kb on + strand at 24.794 kb on + strand at 24.794 kb on + strand at 24.795 kb on - strand at 24.795 kb on - strand at 24.840 kb on + strand, within NOLOHH_00400 at 24.840 kb on + strand, within NOLOHH_00400 at 24.840 kb on + strand, within NOLOHH_00400 at 24.840 kb on + strand, within NOLOHH_00400 at 24.841 kb on - strand, within NOLOHH_00400 at 24.841 kb on - strand, within NOLOHH_00400 at 24.841 kb on - strand, within NOLOHH_00400 at 24.841 kb on - strand, within NOLOHH_00400 at 24.841 kb on - strand, within NOLOHH_00400 at 24.841 kb on - strand, within NOLOHH_00400 at 24.871 kb on - strand, within NOLOHH_00400 at 24.894 kb on - strand, within NOLOHH_00400 at 24.897 kb on + strand, within NOLOHH_00400 at 24.897 kb on + strand, within NOLOHH_00400 at 24.898 kb on - strand, within NOLOHH_00400 at 24.898 kb on - strand, within NOLOHH_00400 at 24.959 kb on - strand, within NOLOHH_00400 at 24.959 kb on - strand, within NOLOHH_00400 at 24.967 kb on + strand, within NOLOHH_00400 at 24.968 kb on - strand, within NOLOHH_00400 at 24.968 kb on - strand, within NOLOHH_00400 at 24.968 kb on - strand, within NOLOHH_00400 at 24.988 kb on + strand, within NOLOHH_00400 at 24.989 kb on - strand, within NOLOHH_00400 at 25.006 kb on + strand, within NOLOHH_00400 at 25.006 kb on + strand, within NOLOHH_00400 at 25.006 kb on + strand, within NOLOHH_00400 at 25.007 kb on - strand, within NOLOHH_00400 at 25.007 kb on - strand, within NOLOHH_00400 at 25.031 kb on + strand, within NOLOHH_00400 at 25.031 kb on + strand, within NOLOHH_00400 at 25.032 kb on - strand, within NOLOHH_00400 at 25.104 kb on - strand at 25.104 kb on - strand at 25.138 kb on + strand at 25.248 kb on - strand, within hipB at 25.500 kb on + strand, within NOLOHH_00410 at 25.501 kb on - strand, within NOLOHH_00410 at 25.501 kb on - strand, within NOLOHH_00410 at 25.501 kb on - strand, within NOLOHH_00410 at 25.506 kb on + strand, within NOLOHH_00410 at 25.506 kb on + strand, within NOLOHH_00410 at 25.507 kb on - strand, within NOLOHH_00410 at 25.507 kb on - strand, within NOLOHH_00410 at 25.507 kb on - strand, within NOLOHH_00410 at 25.507 kb on - strand, within NOLOHH_00410 at 25.526 kb on - strand, within NOLOHH_00410 at 25.613 kb on - strand, within NOLOHH_00410 at 25.625 kb on + strand, within NOLOHH_00410 at 25.625 kb on + strand, within NOLOHH_00410 at 25.625 kb on + strand, within NOLOHH_00410 at 25.626 kb on - strand, within NOLOHH_00410 at 25.626 kb on - strand, within NOLOHH_00410 at 25.626 kb on - strand, within NOLOHH_00410 at 25.789 kb on + strand at 25.795 kb on - strand at 25.800 kb on - strand at 25.820 kb on + strand at 25.821 kb on - strand at 25.821 kb on - strand at 25.821 kb on - strand at 25.821 kb on - strand at 25.821 kb on - strand at 25.821 kb on - strand at 25.821 kb on - strand at 25.821 kb on - strand at 25.821 kb on - strand at 25.821 kb on - strand at 25.821 kb on - strand at 25.866 kb on + strand at 25.867 kb on - strand at 25.867 kb on - strand at 25.867 kb on - strand at 25.867 kb on - strand at 25.867 kb on - strand at 25.867 kb on - strand at 25.867 kb on - strand at 25.870 kb on + strand at 25.871 kb on - strand at 25.871 kb on - strand at 25.871 kb on - strand at 25.871 kb on - strand at 25.882 kb on + strand at 26.004 kb on - strand at 26.074 kb on - strand at 26.241 kb on - strand at 26.241 kb on - strand at 26.265 kb on - strand at 26.265 kb on - strand at 26.311 kb on - strand at 26.311 kb on - strand at 26.311 kb on - strand at 26.311 kb on - strand at 26.311 kb on - strand at 26.311 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 24,177 - -0.2 24,296 - -0.3 24,376 + +1.4 24,376 + +0.2 24,377 - -0.2 24,380 + +1.2 24,380 + +0.1 24,381 - -1.6 24,437 - -0.1 24,437 - -0.4 24,526 + +0.5 24,581 - -2.9 24,581 - -0.0 24,581 - +1.4 24,581 - -0.7 24,581 - -0.7 24,585 + -0.0 24,586 - -0.5 24,591 + -0.1 24,592 - +0.6 24,596 + +0.7 24,596 + -1.0 24,596 + +0.8 24,596 + +0.1 24,596 + -0.9 24,596 + +0.7 24,596 + +0.4 24,597 - +1.1 24,597 - +0.4 24,597 - -0.3 24,597 - +0.5 24,597 - -0.4 24,597 - -1.3 24,597 - +0.8 24,597 - +0.0 24,597 - +0.7 24,597 - +0.2 24,597 - -0.9 24,597 - -0.3 24,597 - +0.0 24,597 - -0.4 24,597 - +0.1 24,602 + +0.3 24,602 + -0.2 24,602 + -0.4 24,602 + +0.3 24,602 + +2.0 24,602 + -0.2 24,602 + +0.6 24,602 + -2.8 24,603 - +0.3 24,603 - -0.9 24,603 - -0.4 24,603 - -0.0 24,603 - -1.4 24,603 - +0.4 24,603 - -0.5 24,603 - -1.1 24,603 - +0.2 24,603 - +0.3 24,603 - -0.0 24,603 - -1.7 24,603 - +0.1 24,603 - +0.3 24,608 - +0.2 24,608 - -0.1 24,608 - -0.9 24,613 + -0.1 24,614 - +0.3 24,626 + +0.3 24,626 + +0.6 24,626 + -0.2 24,626 + -0.3 24,627 - -0.2 24,627 - +0.3 24,627 - -0.5 24,627 - +0.4 24,631 + -0.4 24,703 - +0.3 24,703 - -1.7 24,706 + +0.0 24,794 + +0.0 24,794 + +0.4 24,795 - -0.1 24,795 - -0.6 24,840 + NOLOHH_00400 0.14 -0.9 24,840 + NOLOHH_00400 0.14 +0.1 24,840 + NOLOHH_00400 0.14 +0.1 24,840 + NOLOHH_00400 0.14 +0.8 24,841 - NOLOHH_00400 0.15 -0.5 24,841 - NOLOHH_00400 0.15 -1.0 24,841 - NOLOHH_00400 0.15 +0.4 24,841 - NOLOHH_00400 0.15 -0.7 24,841 - NOLOHH_00400 0.15 +0.7 24,841 - NOLOHH_00400 0.15 +0.1 24,871 - NOLOHH_00400 0.24 +0.2 24,894 - NOLOHH_00400 0.31 -0.2 24,897 + NOLOHH_00400 0.32 +0.2 24,897 + NOLOHH_00400 0.32 +0.4 24,898 - NOLOHH_00400 0.32 -0.4 24,898 - NOLOHH_00400 0.32 +0.1 24,959 - NOLOHH_00400 0.51 -0.7 24,959 - NOLOHH_00400 0.51 +0.8 24,967 + NOLOHH_00400 0.53 -0.5 24,968 - NOLOHH_00400 0.54 -1.2 24,968 - NOLOHH_00400 0.54 -0.1 24,968 - NOLOHH_00400 0.54 +1.4 24,988 + NOLOHH_00400 0.60 +0.3 24,989 - NOLOHH_00400 0.60 +0.7 25,006 + NOLOHH_00400 0.65 +0.4 25,006 + NOLOHH_00400 0.65 +2.0 25,006 + NOLOHH_00400 0.65 +0.1 25,007 - NOLOHH_00400 0.65 -0.7 25,007 - NOLOHH_00400 0.65 +0.6 25,031 + NOLOHH_00400 0.73 +0.2 25,031 + NOLOHH_00400 0.73 +0.1 25,032 - NOLOHH_00400 0.73 +1.0 25,104 - -1.2 25,104 - +0.0 25,138 + +0.6 25,248 - hipB NOLOHH_00405 0.40 +2.3 25,500 + NOLOHH_00410 0.32 +1.0 25,501 - NOLOHH_00410 0.32 +1.0 25,501 - NOLOHH_00410 0.32 -0.4 25,501 - NOLOHH_00410 0.32 +0.1 25,506 + NOLOHH_00410 0.33 +0.5 25,506 + NOLOHH_00410 0.33 -0.6 25,507 - NOLOHH_00410 0.34 +0.0 25,507 - NOLOHH_00410 0.34 +0.2 25,507 - NOLOHH_00410 0.34 -0.1 25,507 - NOLOHH_00410 0.34 +0.3 25,526 - NOLOHH_00410 0.39 +0.4 25,613 - NOLOHH_00410 0.66 -0.3 25,625 + NOLOHH_00410 0.69 +0.8 25,625 + NOLOHH_00410 0.69 +1.0 25,625 + NOLOHH_00410 0.69 -0.2 25,626 - NOLOHH_00410 0.70 +1.7 25,626 - NOLOHH_00410 0.70 +0.6 25,626 - NOLOHH_00410 0.70 -0.1 25,789 + +0.7 25,795 - +1.5 25,800 - +0.5 25,820 + -1.7 25,821 - -0.1 25,821 - +0.2 25,821 - -0.7 25,821 - +1.5 25,821 - -0.5 25,821 - +0.3 25,821 - -0.6 25,821 - +0.2 25,821 - +0.5 25,821 - +0.6 25,821 - +0.9 25,866 + +0.6 25,867 - +0.2 25,867 - -0.1 25,867 - +0.7 25,867 - -0.5 25,867 - -0.5 25,867 - -0.9 25,867 - +0.5 25,870 + +1.4 25,871 - +0.4 25,871 - -0.5 25,871 - -0.0 25,871 - +0.2 25,882 + +0.7 26,004 - +0.2 26,074 - +1.0 26,241 - +0.3 26,241 - -1.3 26,265 - -0.9 26,265 - -0.4 26,311 - -0.4 26,311 - +0.8 26,311 - +0.5 26,311 - -0.1 26,311 - -0.0 26,311 - +0.1
Or see this region's nucleotide sequence