Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_00375 and NOLOHH_00380 are separated by 93 nucleotides NOLOHH_00380 and NOLOHH_00385 overlap by 11 nucleotides NOLOHH_00385 and NOLOHH_00390 are separated by 8 nucleotides NOLOHH_00390 and NOLOHH_00395 are separated by 72 nucleotides
NOLOHH_00375: NOLOHH_00375 - hypothetical protein, at 22,127 to 22,456
_00375
NOLOHH_00380: NOLOHH_00380 - hypothetical protein, at 22,550 to 22,792
_00380
NOLOHH_00385: NOLOHH_00385 - hypothetical protein, at 22,782 to 23,051
_00385
NOLOHH_00390: NOLOHH_00390 - hypothetical protein, at 23,060 to 23,608
_00390
NOLOHH_00395: NOLOHH_00395 - molecular chaperone DnaJ, at 23,681 to 24,196
_00395
Position (kb) 23
24 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 22.129 kb on - strand at 22.132 kb on - strand at 22.135 kb on - strand at 22.135 kb on - strand at 22.512 kb on + strand at 22.512 kb on + strand at 22.555 kb on + strand at 22.636 kb on - strand, within NOLOHH_00380 at 22.815 kb on - strand, within NOLOHH_00385 at 23.022 kb on - strand, within NOLOHH_00385 at 23.118 kb on - strand, within NOLOHH_00390 at 23.121 kb on - strand, within NOLOHH_00390 at 23.284 kb on - strand, within NOLOHH_00390 at 23.414 kb on - strand, within NOLOHH_00390 at 23.418 kb on - strand, within NOLOHH_00390 at 23.462 kb on + strand, within NOLOHH_00390 at 23.465 kb on - strand, within NOLOHH_00390 at 23.634 kb on - strand at 23.655 kb on + strand at 23.656 kb on - strand at 23.740 kb on - strand, within NOLOHH_00395 at 23.791 kb on + strand, within NOLOHH_00395 at 23.791 kb on + strand, within NOLOHH_00395 at 23.840 kb on - strand, within NOLOHH_00395 at 23.867 kb on - strand, within NOLOHH_00395 at 23.945 kb on - strand, within NOLOHH_00395 at 23.974 kb on - strand, within NOLOHH_00395 at 24.103 kb on - strand, within NOLOHH_00395 at 24.124 kb on - strand, within NOLOHH_00395 at 24.177 kb on - strand at 24.296 kb on - strand at 24.376 kb on + strand at 24.376 kb on + strand at 24.377 kb on - strand at 24.380 kb on + strand at 24.380 kb on + strand at 24.381 kb on - strand at 24.437 kb on - strand at 24.437 kb on - strand at 24.526 kb on + strand at 24.581 kb on - strand at 24.581 kb on - strand at 24.581 kb on - strand at 24.581 kb on - strand at 24.581 kb on - strand at 24.585 kb on + strand at 24.586 kb on - strand at 24.591 kb on + strand at 24.592 kb on - strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.608 kb on - strand at 24.608 kb on - strand at 24.608 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 22,129 - -2.3 22,132 - -0.5 22,135 - -2.2 22,135 - -1.0 22,512 + -0.0 22,512 + +0.2 22,555 + +0.4 22,636 - NOLOHH_00380 0.35 +1.0 22,815 - NOLOHH_00385 0.12 -2.3 23,022 - NOLOHH_00385 0.89 -1.9 23,118 - NOLOHH_00390 0.11 -0.9 23,121 - NOLOHH_00390 0.11 +0.1 23,284 - NOLOHH_00390 0.41 -0.1 23,414 - NOLOHH_00390 0.64 -0.7 23,418 - NOLOHH_00390 0.65 -0.7 23,462 + NOLOHH_00390 0.73 -2.1 23,465 - NOLOHH_00390 0.74 -0.2 23,634 - -1.0 23,655 + +0.4 23,656 - -1.6 23,740 - NOLOHH_00395 0.11 -0.3 23,791 + NOLOHH_00395 0.21 +1.1 23,791 + NOLOHH_00395 0.21 +0.5 23,840 - NOLOHH_00395 0.31 -0.3 23,867 - NOLOHH_00395 0.36 -0.3 23,945 - NOLOHH_00395 0.51 +0.0 23,974 - NOLOHH_00395 0.57 -0.6 24,103 - NOLOHH_00395 0.82 -0.1 24,124 - NOLOHH_00395 0.86 -0.7 24,177 - -0.2 24,296 - -0.3 24,376 + +1.4 24,376 + +0.2 24,377 - -0.2 24,380 + +1.2 24,380 + +0.1 24,381 - -1.6 24,437 - -0.1 24,437 - -0.4 24,526 + +0.5 24,581 - -2.9 24,581 - -0.0 24,581 - +1.4 24,581 - -0.7 24,581 - -0.7 24,585 + -0.0 24,586 - -0.5 24,591 + -0.1 24,592 - +0.6 24,596 + +0.7 24,596 + -1.0 24,596 + +0.8 24,596 + +0.1 24,596 + -0.9 24,596 + +0.7 24,596 + +0.4 24,597 - +1.1 24,597 - +0.4 24,597 - -0.3 24,597 - +0.5 24,597 - -0.4 24,597 - -1.3 24,597 - +0.8 24,597 - +0.0 24,597 - +0.7 24,597 - +0.2 24,597 - -0.9 24,597 - -0.3 24,597 - +0.0 24,597 - -0.4 24,597 - +0.1 24,602 + +0.3 24,602 + -0.2 24,602 + -0.4 24,602 + +0.3 24,602 + +2.0 24,602 + -0.2 24,602 + +0.6 24,602 + -2.8 24,603 - +0.3 24,603 - -0.9 24,603 - -0.4 24,603 - -0.0 24,603 - -1.4 24,603 - +0.4 24,603 - -0.5 24,603 - -1.1 24,603 - +0.2 24,603 - +0.3 24,603 - -0.0 24,603 - -1.7 24,603 - +0.1 24,603 - +0.3 24,608 - +0.2 24,608 - -0.1 24,608 - -0.9
Or see this region's nucleotide sequence