Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_00310 and NOLOHH_00315 overlap by 11 nucleotides NOLOHH_00315 and NOLOHH_00320 are separated by 2 nucleotides NOLOHH_00320 and NOLOHH_00325 are separated by 14 nucleotides NOLOHH_00325 and NOLOHH_00330 are separated by 11 nucleotides NOLOHH_00330 and NOLOHH_00335 are separated by 10 nucleotides NOLOHH_00335 and NOLOHH_00340 are separated by 9 nucleotides
NOLOHH_00310: NOLOHH_00310 - VirB8 domain-containing protein, at 11,265 to 11,954
_00310
NOLOHH_00315: NOLOHH_00315 - Cnjugal protein Pilx7, at 11,944 to 12,084
_00315
NOLOHH_00320: NOLOHH_00320 - hypothetical protein, at 12,087 to 12,302
_00320
NOLOHH_00325: NOLOHH_00325 - conjugal transfer protein TrbL, at 12,317 to 13,375
_00325
NOLOHH_00330: NOLOHH_00330 - Eex protein, at 13,387 to 13,611
_00330
NOLOHH_00335: NOLOHH_00335 - type IV secretion system protein VirB5, at 13,622 to 14,329
_00335
NOLOHH_00340: NOLOHH_00340 - ATPase, at 14,339 to 17,074
_00340
Position (kb) 12
13
14 Strain fitness (log2 ratio) -1
0
1 at 11.379 kb on - strand, within NOLOHH_00310 at 11.379 kb on - strand, within NOLOHH_00310 at 11.381 kb on + strand, within NOLOHH_00310 at 11.556 kb on - strand, within NOLOHH_00310 at 11.586 kb on - strand, within NOLOHH_00310 at 11.683 kb on - strand, within NOLOHH_00310 at 11.710 kb on - strand, within NOLOHH_00310 at 11.712 kb on - strand, within NOLOHH_00310 at 11.900 kb on + strand at 11.971 kb on - strand, within NOLOHH_00315 at 12.056 kb on - strand, within NOLOHH_00315 at 12.110 kb on + strand, within NOLOHH_00320 at 12.111 kb on - strand, within NOLOHH_00320 at 12.279 kb on + strand, within NOLOHH_00320 at 12.338 kb on + strand at 12.343 kb on + strand at 12.428 kb on + strand, within NOLOHH_00325 at 12.429 kb on - strand, within NOLOHH_00325 at 12.446 kb on - strand, within NOLOHH_00325 at 12.524 kb on - strand, within NOLOHH_00325 at 12.579 kb on - strand, within NOLOHH_00325 at 12.579 kb on - strand, within NOLOHH_00325 at 12.579 kb on - strand, within NOLOHH_00325 at 12.638 kb on + strand, within NOLOHH_00325 at 12.654 kb on - strand, within NOLOHH_00325 at 12.655 kb on + strand, within NOLOHH_00325 at 12.656 kb on - strand, within NOLOHH_00325 at 12.656 kb on - strand, within NOLOHH_00325 at 12.658 kb on - strand, within NOLOHH_00325 at 12.660 kb on - strand, within NOLOHH_00325 at 12.986 kb on - strand, within NOLOHH_00325 at 13.152 kb on - strand, within NOLOHH_00325 at 13.164 kb on - strand, within NOLOHH_00325 at 13.231 kb on - strand, within NOLOHH_00325 at 13.319 kb on - strand at 13.322 kb on - strand at 13.388 kb on + strand at 13.423 kb on - strand, within NOLOHH_00330 at 13.459 kb on - strand, within NOLOHH_00330 at 13.525 kb on - strand, within NOLOHH_00330 at 13.526 kb on + strand, within NOLOHH_00330 at 13.526 kb on + strand, within NOLOHH_00330 at 13.581 kb on + strand, within NOLOHH_00330 at 13.582 kb on - strand, within NOLOHH_00330 at 13.603 kb on + strand at 13.611 kb on + strand at 13.611 kb on + strand at 13.612 kb on - strand at 13.628 kb on + strand at 13.751 kb on + strand, within NOLOHH_00335 at 13.810 kb on + strand, within NOLOHH_00335 at 13.844 kb on - strand, within NOLOHH_00335 at 13.874 kb on + strand, within NOLOHH_00335 at 13.875 kb on - strand, within NOLOHH_00335 at 13.924 kb on + strand, within NOLOHH_00335 at 13.938 kb on + strand, within NOLOHH_00335 at 13.938 kb on + strand, within NOLOHH_00335 at 13.939 kb on - strand, within NOLOHH_00335 at 13.939 kb on - strand, within NOLOHH_00335 at 13.939 kb on - strand, within NOLOHH_00335 at 14.029 kb on + strand, within NOLOHH_00335 at 14.029 kb on + strand, within NOLOHH_00335 at 14.029 kb on + strand, within NOLOHH_00335 at 14.092 kb on + strand, within NOLOHH_00335 at 14.092 kb on + strand, within NOLOHH_00335 at 14.092 kb on + strand, within NOLOHH_00335 at 14.093 kb on - strand, within NOLOHH_00335 at 14.093 kb on - strand, within NOLOHH_00335 at 14.116 kb on + strand, within NOLOHH_00335 at 14.117 kb on - strand, within NOLOHH_00335 at 14.155 kb on - strand, within NOLOHH_00335 at 14.155 kb on - strand, within NOLOHH_00335 at 14.155 kb on - strand, within NOLOHH_00335 at 14.176 kb on - strand, within NOLOHH_00335 at 14.240 kb on - strand, within NOLOHH_00335 at 14.359 kb on - strand at 14.359 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 11,379 - NOLOHH_00310 0.17 -0.2 11,379 - NOLOHH_00310 0.17 +0.3 11,381 + NOLOHH_00310 0.17 +0.6 11,556 - NOLOHH_00310 0.42 +0.3 11,586 - NOLOHH_00310 0.47 -0.2 11,683 - NOLOHH_00310 0.61 +1.0 11,710 - NOLOHH_00310 0.64 -0.4 11,712 - NOLOHH_00310 0.65 +0.0 11,900 + +1.0 11,971 - NOLOHH_00315 0.19 +0.3 12,056 - NOLOHH_00315 0.79 -0.9 12,110 + NOLOHH_00320 0.11 +0.5 12,111 - NOLOHH_00320 0.11 +0.2 12,279 + NOLOHH_00320 0.89 +0.7 12,338 + +0.3 12,343 + +0.2 12,428 + NOLOHH_00325 0.10 +0.6 12,429 - NOLOHH_00325 0.11 +0.9 12,446 - NOLOHH_00325 0.12 +0.4 12,524 - NOLOHH_00325 0.20 +1.1 12,579 - NOLOHH_00325 0.25 +0.0 12,579 - NOLOHH_00325 0.25 +0.0 12,579 - NOLOHH_00325 0.25 -0.0 12,638 + NOLOHH_00325 0.30 +0.3 12,654 - NOLOHH_00325 0.32 +0.2 12,655 + NOLOHH_00325 0.32 +0.5 12,656 - NOLOHH_00325 0.32 +0.2 12,656 - NOLOHH_00325 0.32 +0.2 12,658 - NOLOHH_00325 0.32 -0.5 12,660 - NOLOHH_00325 0.32 -0.7 12,986 - NOLOHH_00325 0.63 -0.0 13,152 - NOLOHH_00325 0.79 +0.7 13,164 - NOLOHH_00325 0.80 +0.5 13,231 - NOLOHH_00325 0.86 -0.9 13,319 - +0.7 13,322 - -0.4 13,388 + +0.5 13,423 - NOLOHH_00330 0.16 -0.1 13,459 - NOLOHH_00330 0.32 -0.4 13,525 - NOLOHH_00330 0.61 +0.1 13,526 + NOLOHH_00330 0.62 +1.0 13,526 + NOLOHH_00330 0.62 +1.2 13,581 + NOLOHH_00330 0.86 +0.2 13,582 - NOLOHH_00330 0.87 -0.2 13,603 + +0.6 13,611 + +0.1 13,611 + -0.3 13,612 - -0.2 13,628 + +1.6 13,751 + NOLOHH_00335 0.18 +0.1 13,810 + NOLOHH_00335 0.27 +0.9 13,844 - NOLOHH_00335 0.31 -0.1 13,874 + NOLOHH_00335 0.36 -0.2 13,875 - NOLOHH_00335 0.36 +0.4 13,924 + NOLOHH_00335 0.43 +1.0 13,938 + NOLOHH_00335 0.45 +0.7 13,938 + NOLOHH_00335 0.45 -0.2 13,939 - NOLOHH_00335 0.45 -0.0 13,939 - NOLOHH_00335 0.45 +0.0 13,939 - NOLOHH_00335 0.45 +0.1 14,029 + NOLOHH_00335 0.57 -0.6 14,029 + NOLOHH_00335 0.57 -0.4 14,029 + NOLOHH_00335 0.57 +1.1 14,092 + NOLOHH_00335 0.66 -0.1 14,092 + NOLOHH_00335 0.66 -0.2 14,092 + NOLOHH_00335 0.66 -0.6 14,093 - NOLOHH_00335 0.67 +0.9 14,093 - NOLOHH_00335 0.67 -0.2 14,116 + NOLOHH_00335 0.70 +0.2 14,117 - NOLOHH_00335 0.70 +1.3 14,155 - NOLOHH_00335 0.75 +0.5 14,155 - NOLOHH_00335 0.75 +0.4 14,155 - NOLOHH_00335 0.75 -1.2 14,176 - NOLOHH_00335 0.78 -1.4 14,240 - NOLOHH_00335 0.87 +0.6 14,359 - +0.7 14,359 - +0.1
Or see this region's nucleotide sequence