Strain Fitness in Escherichia coli ECOR27 around NOLOHH_23045

Experiment: TP12

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_23035 and NOLOHH_23040 are separated by 157 nucleotidesNOLOHH_23040 and NOLOHH_23045 overlap by 4 nucleotidesNOLOHH_23045 and NOLOHH_23050 are separated by 1 nucleotidesNOLOHH_23050 and NOLOHH_23055 overlap by 4 nucleotides NOLOHH_23035: NOLOHH_23035 - DUF5405 domain-containing protein, at 4,532,845 to 4,533,126 _23035 NOLOHH_23040: NOLOHH_23040 - hypothetical protein, at 4,533,284 to 4,533,877 _23040 NOLOHH_23045: NOLOHH_23045 - hypothetical protein, at 4,533,874 to 4,534,113 _23045 NOLOHH_23050: NOLOHH_23050 - Ead/Ea22-like protein, at 4,534,115 to 4,534,630 _23050 NOLOHH_23055: NOLOHH_23055 - DUF550 domain-containing protein, at 4,534,627 to 4,535,343 _23055 Position (kb) 4533 4534 4535Strain fitness (log2 ratio) -1 0 1 2 3at 4533.005 kb on + strand, within NOLOHH_23035at 4533.006 kb on - strand, within NOLOHH_23035at 4533.074 kb on + strand, within NOLOHH_23035at 4533.300 kb on + strandat 4533.374 kb on + strand, within NOLOHH_23040at 4533.454 kb on + strand, within NOLOHH_23040at 4533.454 kb on + strand, within NOLOHH_23040at 4533.475 kb on + strand, within NOLOHH_23040at 4533.548 kb on - strand, within NOLOHH_23040at 4533.548 kb on - strand, within NOLOHH_23040at 4533.562 kb on + strand, within NOLOHH_23040at 4533.654 kb on - strand, within NOLOHH_23040at 4533.656 kb on + strand, within NOLOHH_23040at 4533.657 kb on - strand, within NOLOHH_23040at 4533.775 kb on + strand, within NOLOHH_23040at 4533.775 kb on + strand, within NOLOHH_23040at 4533.821 kb on - strandat 4533.821 kb on - strandat 4533.837 kb on + strandat 4533.837 kb on + strandat 4533.839 kb on + strandat 4533.938 kb on + strand, within NOLOHH_23045at 4533.997 kb on + strand, within NOLOHH_23045at 4533.998 kb on - strand, within NOLOHH_23045at 4534.088 kb on + strand, within NOLOHH_23045at 4534.151 kb on + strandat 4534.201 kb on + strand, within NOLOHH_23050at 4534.201 kb on + strand, within NOLOHH_23050at 4534.203 kb on + strand, within NOLOHH_23050at 4534.203 kb on + strand, within NOLOHH_23050at 4534.203 kb on + strand, within NOLOHH_23050at 4534.204 kb on - strand, within NOLOHH_23050at 4534.307 kb on - strand, within NOLOHH_23050at 4534.381 kb on + strand, within NOLOHH_23050at 4534.416 kb on + strand, within NOLOHH_23050at 4534.416 kb on + strand, within NOLOHH_23050at 4534.449 kb on + strand, within NOLOHH_23050at 4534.513 kb on + strand, within NOLOHH_23050at 4534.576 kb on + strand, within NOLOHH_23050at 4534.584 kb on + strandat 4534.584 kb on + strandat 4534.585 kb on - strandat 4534.586 kb on + strandat 4534.586 kb on + strandat 4534.596 kb on + strandat 4534.596 kb on + strandat 4534.606 kb on + strandat 4534.606 kb on + strandat 4534.635 kb on + strandat 4534.681 kb on + strandat 4534.692 kb on + strandat 4534.938 kb on + strand, within NOLOHH_23055at 4535.040 kb on + strand, within NOLOHH_23055at 4535.111 kb on + strand, within NOLOHH_23055at 4535.111 kb on + strand, within NOLOHH_23055

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Per-strain Table

Position Strand Gene LocusTag Fraction TP12
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4,533,005 + NOLOHH_23035 0.57 +1.7
4,533,006 - NOLOHH_23035 0.57 +0.3
4,533,074 + NOLOHH_23035 0.81 +0.9
4,533,300 + -0.1
4,533,374 + NOLOHH_23040 0.15 +0.7
4,533,454 + NOLOHH_23040 0.29 -0.2
4,533,454 + NOLOHH_23040 0.29 +1.1
4,533,475 + NOLOHH_23040 0.32 +0.1
4,533,548 - NOLOHH_23040 0.44 -1.5
4,533,548 - NOLOHH_23040 0.44 +0.5
4,533,562 + NOLOHH_23040 0.47 +0.3
4,533,654 - NOLOHH_23040 0.62 +2.1
4,533,656 + NOLOHH_23040 0.63 +1.1
4,533,657 - NOLOHH_23040 0.63 -0.5
4,533,775 + NOLOHH_23040 0.83 +1.1
4,533,775 + NOLOHH_23040 0.83 +0.3
4,533,821 - -1.6
4,533,821 - +0.9
4,533,837 + -0.0
4,533,837 + +1.2
4,533,839 + +2.3
4,533,938 + NOLOHH_23045 0.27 -0.0
4,533,997 + NOLOHH_23045 0.51 +1.9
4,533,998 - NOLOHH_23045 0.52 +0.1
4,534,088 + NOLOHH_23045 0.89 +0.4
4,534,151 + +1.5
4,534,201 + NOLOHH_23050 0.17 +0.5
4,534,201 + NOLOHH_23050 0.17 +0.7
4,534,203 + NOLOHH_23050 0.17 +0.1
4,534,203 + NOLOHH_23050 0.17 +0.5
4,534,203 + NOLOHH_23050 0.17 +1.5
4,534,204 - NOLOHH_23050 0.17 -0.2
4,534,307 - NOLOHH_23050 0.37 -0.5
4,534,381 + NOLOHH_23050 0.52 +0.7
4,534,416 + NOLOHH_23050 0.58 -1.5
4,534,416 + NOLOHH_23050 0.58 +2.8
4,534,449 + NOLOHH_23050 0.65 +1.3
4,534,513 + NOLOHH_23050 0.77 -0.0
4,534,576 + NOLOHH_23050 0.89 -1.5
4,534,584 + +1.9
4,534,584 + -1.3
4,534,585 - +1.5
4,534,586 + +0.9
4,534,586 + +0.2
4,534,596 + -0.1
4,534,596 + -0.1
4,534,606 + -1.0
4,534,606 + -1.1
4,534,635 + -1.2
4,534,681 + +1.5
4,534,692 + +2.1
4,534,938 + NOLOHH_23055 0.43 +1.4
4,535,040 + NOLOHH_23055 0.58 +1.0
4,535,111 + NOLOHH_23055 0.68 +0.2
4,535,111 + NOLOHH_23055 0.68 +0.5

Or see this region's nucleotide sequence