Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt msbA and ycaI are separated by 36 nucleotides ycaI and ihfB are separated by 206 nucleotides ihfB and rpsA are separated by 159 nucleotides
NOLOHH_22015: msbA - lipid A ABC transporter ATP-binding protein/permease MsbA, at 4,334,603 to 4,336,351
msbA
NOLOHH_22020: ycaI - ComEC family protein, at 4,336,388 to 4,338,652
ycaI
NOLOHH_22025: ihfB - integration host factor subunit beta, at 4,338,859 to 4,339,143
ihfB
NOLOHH_22030: rpsA - 30S ribosomal protein S1, at 4,339,303 to 4,340,976
rpsA
Position (kb) 4336
4337
4338
4339 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4336.437 kb on - strand at 4336.584 kb on + strand at 4336.631 kb on + strand, within ycaI at 4336.654 kb on + strand, within ycaI at 4336.819 kb on + strand, within ycaI at 4336.819 kb on + strand, within ycaI at 4336.907 kb on + strand, within ycaI at 4337.149 kb on - strand, within ycaI at 4337.207 kb on + strand, within ycaI at 4337.208 kb on - strand, within ycaI at 4337.730 kb on - strand, within ycaI at 4337.730 kb on - strand, within ycaI at 4337.770 kb on + strand, within ycaI at 4337.770 kb on + strand, within ycaI at 4337.785 kb on + strand, within ycaI at 4337.907 kb on + strand, within ycaI at 4337.907 kb on + strand, within ycaI at 4337.908 kb on - strand, within ycaI at 4337.981 kb on + strand, within ycaI at 4338.054 kb on - strand, within ycaI at 4338.064 kb on + strand, within ycaI at 4338.079 kb on + strand, within ycaI at 4338.080 kb on - strand, within ycaI at 4338.082 kb on - strand, within ycaI at 4338.082 kb on - strand, within ycaI at 4338.082 kb on - strand, within ycaI at 4338.101 kb on + strand, within ycaI at 4338.101 kb on + strand, within ycaI at 4338.131 kb on - strand, within ycaI at 4338.226 kb on + strand, within ycaI at 4338.309 kb on + strand, within ycaI at 4338.337 kb on + strand, within ycaI at 4338.338 kb on - strand, within ycaI at 4338.338 kb on - strand, within ycaI at 4338.338 kb on - strand, within ycaI at 4338.350 kb on + strand, within ycaI at 4338.351 kb on - strand, within ycaI at 4338.505 kb on + strand at 4338.507 kb on + strand at 4338.529 kb on + strand at 4338.629 kb on + strand at 4338.867 kb on - strand at 4338.958 kb on - strand, within ihfB at 4339.220 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 4,336,437 - -1.5 4,336,584 + +0.0 4,336,631 + ycaI NOLOHH_22020 0.11 -0.5 4,336,654 + ycaI NOLOHH_22020 0.12 -0.5 4,336,819 + ycaI NOLOHH_22020 0.19 -0.4 4,336,819 + ycaI NOLOHH_22020 0.19 -1.1 4,336,907 + ycaI NOLOHH_22020 0.23 -0.7 4,337,149 - ycaI NOLOHH_22020 0.34 +1.5 4,337,207 + ycaI NOLOHH_22020 0.36 -1.5 4,337,208 - ycaI NOLOHH_22020 0.36 -0.1 4,337,730 - ycaI NOLOHH_22020 0.59 +0.5 4,337,730 - ycaI NOLOHH_22020 0.59 -0.5 4,337,770 + ycaI NOLOHH_22020 0.61 -0.7 4,337,770 + ycaI NOLOHH_22020 0.61 +0.5 4,337,785 + ycaI NOLOHH_22020 0.62 +0.5 4,337,907 + ycaI NOLOHH_22020 0.67 +0.1 4,337,907 + ycaI NOLOHH_22020 0.67 +1.5 4,337,908 - ycaI NOLOHH_22020 0.67 +1.1 4,337,981 + ycaI NOLOHH_22020 0.70 +0.8 4,338,054 - ycaI NOLOHH_22020 0.74 +1.3 4,338,064 + ycaI NOLOHH_22020 0.74 +0.5 4,338,079 + ycaI NOLOHH_22020 0.75 +1.5 4,338,080 - ycaI NOLOHH_22020 0.75 +0.0 4,338,082 - ycaI NOLOHH_22020 0.75 +1.2 4,338,082 - ycaI NOLOHH_22020 0.75 -0.5 4,338,082 - ycaI NOLOHH_22020 0.75 +1.5 4,338,101 + ycaI NOLOHH_22020 0.76 -1.2 4,338,101 + ycaI NOLOHH_22020 0.76 +0.5 4,338,131 - ycaI NOLOHH_22020 0.77 +2.5 4,338,226 + ycaI NOLOHH_22020 0.81 -0.5 4,338,309 + ycaI NOLOHH_22020 0.85 -2.1 4,338,337 + ycaI NOLOHH_22020 0.86 -1.5 4,338,338 - ycaI NOLOHH_22020 0.86 +2.1 4,338,338 - ycaI NOLOHH_22020 0.86 +0.5 4,338,338 - ycaI NOLOHH_22020 0.86 +1.8 4,338,350 + ycaI NOLOHH_22020 0.87 +0.5 4,338,351 - ycaI NOLOHH_22020 0.87 +2.1 4,338,505 + +0.1 4,338,507 + +1.0 4,338,529 + +0.2 4,338,629 + +0.5 4,338,867 - -1.5 4,338,958 - ihfB NOLOHH_22025 0.35 -1.1 4,339,220 - +0.2
Or see this region's nucleotide sequence