Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ptrB and exoX overlap by 4 nucleotides exoX and yobB are separated by 23 nucleotides yobB and holE are separated by 101 nucleotides
NOLOHH_16890: ptrB - oligopeptidase B, at 3,319,849 to 3,321,909
ptrB
NOLOHH_16895: exoX - exodeoxyribonuclease X, at 3,321,906 to 3,322,568
exoX
NOLOHH_16900: yobB - Uncharacterized protein YobB, at 3,322,592 to 3,323,248
yobB
NOLOHH_16905: holE - DNA polymerase III subunit theta, at 3,323,350 to 3,323,580
holE
Position (kb)
3321
3322
3323 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3320.978 kb on - strand, within ptrB at 3321.047 kb on + strand, within ptrB at 3321.050 kb on + strand, within ptrB at 3321.088 kb on + strand, within ptrB at 3321.151 kb on + strand, within ptrB at 3321.196 kb on + strand, within ptrB at 3321.277 kb on + strand, within ptrB at 3321.534 kb on - strand, within ptrB at 3321.631 kb on + strand, within ptrB at 3321.773 kb on + strand at 3321.908 kb on - strand at 3321.972 kb on - strand at 3322.147 kb on + strand, within exoX at 3322.148 kb on - strand, within exoX at 3322.157 kb on - strand, within exoX at 3322.157 kb on - strand, within exoX at 3322.215 kb on - strand, within exoX at 3322.358 kb on - strand, within exoX at 3322.440 kb on - strand, within exoX at 3322.599 kb on - strand at 3322.599 kb on - strand at 3322.653 kb on - strand at 3322.700 kb on + strand, within yobB at 3322.712 kb on - strand, within yobB at 3322.850 kb on - strand, within yobB at 3322.924 kb on - strand, within yobB at 3322.924 kb on - strand, within yobB at 3322.972 kb on + strand, within yobB at 3322.984 kb on + strand, within yobB at 3322.984 kb on + strand, within yobB at 3322.986 kb on + strand, within yobB at 3322.987 kb on - strand, within yobB at 3323.249 kb on - strand at 3323.335 kb on - strand at 3323.356 kb on - strand at 3323.484 kb on + strand, within holE at 3323.485 kb on - strand, within holE at 3323.499 kb on + strand, within holE at 3323.499 kb on + strand, within holE
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 3,320,978 - ptrB NOLOHH_16890 0.55 -1.1 3,321,047 + ptrB NOLOHH_16890 0.58 -0.1 3,321,050 + ptrB NOLOHH_16890 0.58 +0.5 3,321,088 + ptrB NOLOHH_16890 0.60 -0.1 3,321,151 + ptrB NOLOHH_16890 0.63 -0.1 3,321,196 + ptrB NOLOHH_16890 0.65 +0.5 3,321,277 + ptrB NOLOHH_16890 0.69 -0.7 3,321,534 - ptrB NOLOHH_16890 0.82 +0.5 3,321,631 + ptrB NOLOHH_16890 0.86 +0.8 3,321,773 + +0.1 3,321,908 - -0.8 3,321,972 - -2.1 3,322,147 + exoX NOLOHH_16895 0.36 -1.1 3,322,148 - exoX NOLOHH_16895 0.37 +0.1 3,322,157 - exoX NOLOHH_16895 0.38 +1.5 3,322,157 - exoX NOLOHH_16895 0.38 +0.5 3,322,215 - exoX NOLOHH_16895 0.47 +2.5 3,322,358 - exoX NOLOHH_16895 0.68 -0.5 3,322,440 - exoX NOLOHH_16895 0.81 -0.5 3,322,599 - +0.5 3,322,599 - +3.1 3,322,653 - -0.3 3,322,700 + yobB NOLOHH_16900 0.16 -1.1 3,322,712 - yobB NOLOHH_16900 0.18 +0.5 3,322,850 - yobB NOLOHH_16900 0.39 -0.8 3,322,924 - yobB NOLOHH_16900 0.51 +0.5 3,322,924 - yobB NOLOHH_16900 0.51 +0.5 3,322,972 + yobB NOLOHH_16900 0.58 -1.5 3,322,984 + yobB NOLOHH_16900 0.60 -1.5 3,322,984 + yobB NOLOHH_16900 0.60 +0.2 3,322,986 + yobB NOLOHH_16900 0.60 -0.5 3,322,987 - yobB NOLOHH_16900 0.60 -0.5 3,323,249 - +0.5 3,323,335 - -0.5 3,323,356 - +0.5 3,323,484 + holE NOLOHH_16905 0.58 +1.1 3,323,485 - holE NOLOHH_16905 0.58 -0.8 3,323,499 + holE NOLOHH_16905 0.65 -0.5 3,323,499 + holE NOLOHH_16905 0.65 -1.5
Or see this region's nucleotide sequence