Strain Fitness in Escherichia coli ECOR27 around NOLOHH_16895

Experiment: TP12

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntptrB and exoX overlap by 4 nucleotidesexoX and yobB are separated by 23 nucleotidesyobB and holE are separated by 101 nucleotides NOLOHH_16890: ptrB - oligopeptidase B, at 3,319,849 to 3,321,909 ptrB NOLOHH_16895: exoX - exodeoxyribonuclease X, at 3,321,906 to 3,322,568 exoX NOLOHH_16900: yobB - Uncharacterized protein YobB, at 3,322,592 to 3,323,248 yobB NOLOHH_16905: holE - DNA polymerase III subunit theta, at 3,323,350 to 3,323,580 holE Position (kb) 3321 3322 3323Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3320.978 kb on - strand, within ptrBat 3321.047 kb on + strand, within ptrBat 3321.050 kb on + strand, within ptrBat 3321.088 kb on + strand, within ptrBat 3321.151 kb on + strand, within ptrBat 3321.196 kb on + strand, within ptrBat 3321.277 kb on + strand, within ptrBat 3321.534 kb on - strand, within ptrBat 3321.631 kb on + strand, within ptrBat 3321.773 kb on + strandat 3321.908 kb on - strandat 3321.972 kb on - strandat 3322.147 kb on + strand, within exoXat 3322.148 kb on - strand, within exoXat 3322.157 kb on - strand, within exoXat 3322.157 kb on - strand, within exoXat 3322.215 kb on - strand, within exoXat 3322.358 kb on - strand, within exoXat 3322.440 kb on - strand, within exoXat 3322.599 kb on - strandat 3322.599 kb on - strandat 3322.653 kb on - strandat 3322.700 kb on + strand, within yobBat 3322.712 kb on - strand, within yobBat 3322.850 kb on - strand, within yobBat 3322.924 kb on - strand, within yobBat 3322.924 kb on - strand, within yobBat 3322.972 kb on + strand, within yobBat 3322.984 kb on + strand, within yobBat 3322.984 kb on + strand, within yobBat 3322.986 kb on + strand, within yobBat 3322.987 kb on - strand, within yobBat 3323.249 kb on - strandat 3323.335 kb on - strandat 3323.356 kb on - strandat 3323.484 kb on + strand, within holEat 3323.485 kb on - strand, within holEat 3323.499 kb on + strand, within holEat 3323.499 kb on + strand, within holE

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Per-strain Table

Position Strand Gene LocusTag Fraction TP12
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3,320,978 - ptrB NOLOHH_16890 0.55 -1.1
3,321,047 + ptrB NOLOHH_16890 0.58 -0.1
3,321,050 + ptrB NOLOHH_16890 0.58 +0.5
3,321,088 + ptrB NOLOHH_16890 0.60 -0.1
3,321,151 + ptrB NOLOHH_16890 0.63 -0.1
3,321,196 + ptrB NOLOHH_16890 0.65 +0.5
3,321,277 + ptrB NOLOHH_16890 0.69 -0.7
3,321,534 - ptrB NOLOHH_16890 0.82 +0.5
3,321,631 + ptrB NOLOHH_16890 0.86 +0.8
3,321,773 + +0.1
3,321,908 - -0.8
3,321,972 - -2.1
3,322,147 + exoX NOLOHH_16895 0.36 -1.1
3,322,148 - exoX NOLOHH_16895 0.37 +0.1
3,322,157 - exoX NOLOHH_16895 0.38 +1.5
3,322,157 - exoX NOLOHH_16895 0.38 +0.5
3,322,215 - exoX NOLOHH_16895 0.47 +2.5
3,322,358 - exoX NOLOHH_16895 0.68 -0.5
3,322,440 - exoX NOLOHH_16895 0.81 -0.5
3,322,599 - +0.5
3,322,599 - +3.1
3,322,653 - -0.3
3,322,700 + yobB NOLOHH_16900 0.16 -1.1
3,322,712 - yobB NOLOHH_16900 0.18 +0.5
3,322,850 - yobB NOLOHH_16900 0.39 -0.8
3,322,924 - yobB NOLOHH_16900 0.51 +0.5
3,322,924 - yobB NOLOHH_16900 0.51 +0.5
3,322,972 + yobB NOLOHH_16900 0.58 -1.5
3,322,984 + yobB NOLOHH_16900 0.60 -1.5
3,322,984 + yobB NOLOHH_16900 0.60 +0.2
3,322,986 + yobB NOLOHH_16900 0.60 -0.5
3,322,987 - yobB NOLOHH_16900 0.60 -0.5
3,323,249 - +0.5
3,323,335 - -0.5
3,323,356 - +0.5
3,323,484 + holE NOLOHH_16905 0.58 +1.1
3,323,485 - holE NOLOHH_16905 0.58 -0.8
3,323,499 + holE NOLOHH_16905 0.65 -0.5
3,323,499 + holE NOLOHH_16905 0.65 -1.5

Or see this region's nucleotide sequence