Strain Fitness in Escherichia coli ECOR27 around NOLOHH_14110

Experiment: TP12

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntevgS and evgA are separated by 4 nucleotidesevgA and evgL overlap by 4 nucleotidesevgL and emrK are separated by 388 nucleotides NOLOHH_14105: evgS - acid-sensing system histidine kinase EvgS, at 2,741,084 to 2,744,677 evgS NOLOHH_14110: evgA - acid-sensing system DNA-binding response regulator EvgA, at 2,744,682 to 2,745,296 evgA NOLOHH_14115: evgL - Protein EvgL, at 2,745,293 to 2,745,322 evgL NOLOHH_14120: emrK - multidrug efflux MFS transporter periplasmic adaptor subunit EmrK, at 2,745,711 to 2,746,874 emrK Position (kb) 2744 2745 2746Strain fitness (log2 ratio) -1 0 1 2 3 4at 2744.179 kb on + strand, within evgSat 2744.532 kb on - strandat 2744.605 kb on - strandat 2745.297 kb on - strand, within evgLat 2745.338 kb on - strandat 2745.341 kb on - strandat 2745.408 kb on - strandat 2745.420 kb on - strandat 2745.421 kb on + strandat 2745.422 kb on - strandat 2745.427 kb on - strandat 2745.591 kb on + strandat 2745.920 kb on + strand, within emrK

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction TP12
remove
2,744,179 + evgS NOLOHH_14105 0.86 +0.6
2,744,532 - +0.6
2,744,605 - -0.4
2,745,297 - evgL NOLOHH_14115 0.13 +3.9
2,745,338 - -0.8
2,745,341 - -0.6
2,745,408 - -1.7
2,745,420 - +0.6
2,745,421 + +2.2
2,745,422 - -0.1
2,745,427 - -0.4
2,745,591 + -0.4
2,745,920 + emrK NOLOHH_14120 0.18 +0.6

Or see this region's nucleotide sequence