Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt eutS and eutP are separated by 12 nucleotides eutP and eutQ overlap by 26 nucleotides eutQ and eutT overlap by 4 nucleotides eutT and pta overlap by 4 nucleotides
NOLOHH_13690: eutS - Bacterial microcompartment shell protein EutS, at 2,662,932 to 2,663,267
eutS
NOLOHH_13695: eutP - ethanolamine utilization acetate kinase EutP, at 2,663,280 to 2,663,759
eutP
NOLOHH_13700: eutQ - ethanolamine utilization acetate kinase EutQ, at 2,663,734 to 2,664,435
eutQ
NOLOHH_13705: eutT - ethanolamine utilization cob(I)yrinic acid a,c-diamide adenosyltransferase EutT, at 2,664,432 to 2,665,235
eutT
NOLOHH_13710: pta - phosphate acetyltransferase, at 2,665,232 to 2,666,248
pta
Position (kb)
2663
2664
2665 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2662.734 kb on - strand at 2662.748 kb on - strand at 2662.750 kb on - strand at 2662.755 kb on - strand at 2662.755 kb on - strand at 2662.775 kb on - strand at 2662.777 kb on - strand at 2662.817 kb on + strand at 2662.818 kb on - strand at 2662.840 kb on - strand at 2662.878 kb on + strand at 2662.878 kb on + strand at 2662.902 kb on + strand at 2663.068 kb on + strand, within eutS at 2663.189 kb on - strand, within eutS at 2663.222 kb on - strand, within eutS at 2663.265 kb on + strand at 2663.268 kb on + strand at 2663.352 kb on + strand, within eutP at 2663.456 kb on + strand, within eutP at 2663.456 kb on + strand, within eutP at 2663.473 kb on + strand, within eutP at 2663.473 kb on + strand, within eutP at 2663.474 kb on - strand, within eutP at 2663.474 kb on - strand, within eutP at 2663.487 kb on + strand, within eutP at 2663.488 kb on - strand, within eutP at 2663.577 kb on - strand, within eutP at 2663.620 kb on + strand, within eutP at 2663.621 kb on - strand, within eutP at 2663.700 kb on + strand, within eutP at 2663.761 kb on - strand at 2663.821 kb on - strand, within eutQ at 2663.852 kb on + strand, within eutQ at 2664.217 kb on - strand, within eutQ at 2664.257 kb on - strand, within eutQ at 2664.375 kb on + strand at 2664.400 kb on + strand at 2664.401 kb on - strand at 2664.460 kb on + strand at 2664.473 kb on + strand at 2664.474 kb on - strand at 2664.474 kb on - strand at 2664.573 kb on - strand, within eutT at 2664.876 kb on - strand, within eutT at 2664.876 kb on - strand, within eutT at 2664.973 kb on - strand, within eutT at 2665.109 kb on - strand, within eutT at 2665.155 kb on + strand at 2665.156 kb on - strand at 2665.328 kb on + strand at 2665.328 kb on + strand at 2665.329 kb on - strand at 2665.329 kb on - strand at 2665.333 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 2,662,734 - -0.1 2,662,748 - -0.4 2,662,750 - +0.6 2,662,755 - -0.6 2,662,755 - +2.2 2,662,775 - +1.0 2,662,777 - -0.7 2,662,817 + -1.0 2,662,818 - -1.4 2,662,840 - -1.1 2,662,878 + +0.6 2,662,878 + -0.7 2,662,902 + +0.6 2,663,068 + eutS NOLOHH_13690 0.40 -0.5 2,663,189 - eutS NOLOHH_13690 0.76 +2.6 2,663,222 - eutS NOLOHH_13690 0.86 -0.1 2,663,265 + +0.8 2,663,268 + +1.6 2,663,352 + eutP NOLOHH_13695 0.15 +2.2 2,663,456 + eutP NOLOHH_13695 0.37 -0.4 2,663,456 + eutP NOLOHH_13695 0.37 -1.0 2,663,473 + eutP NOLOHH_13695 0.40 +0.0 2,663,473 + eutP NOLOHH_13695 0.40 +0.1 2,663,474 - eutP NOLOHH_13695 0.40 -0.6 2,663,474 - eutP NOLOHH_13695 0.40 +1.6 2,663,487 + eutP NOLOHH_13695 0.43 -0.4 2,663,488 - eutP NOLOHH_13695 0.43 -1.0 2,663,577 - eutP NOLOHH_13695 0.62 +0.0 2,663,620 + eutP NOLOHH_13695 0.71 -0.4 2,663,621 - eutP NOLOHH_13695 0.71 +0.9 2,663,700 + eutP NOLOHH_13695 0.88 -0.3 2,663,761 - -0.4 2,663,821 - eutQ NOLOHH_13700 0.12 +2.4 2,663,852 + eutQ NOLOHH_13700 0.17 -0.1 2,664,217 - eutQ NOLOHH_13700 0.69 -3.1 2,664,257 - eutQ NOLOHH_13700 0.75 -0.4 2,664,375 + +0.0 2,664,400 + -0.4 2,664,401 - +0.6 2,664,460 + +0.0 2,664,473 + +0.0 2,664,474 - +0.6 2,664,474 - +1.3 2,664,573 - eutT NOLOHH_13705 0.18 +1.2 2,664,876 - eutT NOLOHH_13705 0.55 -0.8 2,664,876 - eutT NOLOHH_13705 0.55 -0.2 2,664,973 - eutT NOLOHH_13705 0.67 -0.8 2,665,109 - eutT NOLOHH_13705 0.84 -0.2 2,665,155 + -0.1 2,665,156 - -0.7 2,665,328 + +2.6 2,665,328 + -0.2 2,665,329 - +1.6 2,665,329 - +1.2 2,665,333 - -0.8
Or see this region's nucleotide sequence