Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt asd and mscM are separated by 21 nucleotides mscM and yjeM are separated by 150 nucleotides
NOLOHH_04585: asd - archaetidylserine decarboxylase, at 828,536 to 829,504
asd
NOLOHH_04590: mscM - miniconductance mechanosensitive channel MscM, at 829,526 to 832,849
mscM
NOLOHH_04595: yjeM - glutamate/gamma-aminobutyrate family transporter YjeM, at 833,000 to 834,457
yjeM
Position (kb) 829
830
831
832
833 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 829.389 kb on + strand, within asd at 829.502 kb on + strand at 829.502 kb on + strand at 829.502 kb on + strand at 829.683 kb on + strand at 829.683 kb on + strand at 829.683 kb on + strand at 829.751 kb on + strand at 829.785 kb on + strand at 829.792 kb on + strand at 829.793 kb on - strand at 829.793 kb on - strand at 829.980 kb on + strand, within mscM at 829.981 kb on - strand, within mscM at 829.981 kb on - strand, within mscM at 829.981 kb on - strand, within mscM at 829.981 kb on - strand, within mscM at 829.981 kb on - strand, within mscM at 829.981 kb on - strand, within mscM at 829.981 kb on - strand, within mscM at 830.012 kb on - strand, within mscM at 830.021 kb on - strand, within mscM at 830.143 kb on - strand, within mscM at 830.143 kb on - strand, within mscM at 830.186 kb on + strand, within mscM at 830.187 kb on - strand, within mscM at 830.187 kb on - strand, within mscM at 830.199 kb on + strand, within mscM at 830.199 kb on + strand, within mscM at 830.199 kb on + strand, within mscM at 830.200 kb on - strand, within mscM at 830.203 kb on + strand, within mscM at 830.204 kb on - strand, within mscM at 830.254 kb on + strand, within mscM at 830.317 kb on + strand, within mscM at 830.407 kb on - strand, within mscM at 830.429 kb on - strand, within mscM at 830.569 kb on - strand, within mscM at 830.573 kb on + strand, within mscM at 830.588 kb on - strand, within mscM at 830.591 kb on - strand, within mscM at 830.656 kb on + strand, within mscM at 830.725 kb on - strand, within mscM at 830.807 kb on + strand, within mscM at 830.993 kb on - strand, within mscM at 830.993 kb on - strand, within mscM at 830.997 kb on - strand, within mscM at 831.008 kb on + strand, within mscM at 831.008 kb on + strand, within mscM at 831.321 kb on - strand, within mscM at 831.323 kb on + strand, within mscM at 831.324 kb on - strand, within mscM at 831.324 kb on - strand, within mscM at 831.343 kb on + strand, within mscM at 831.344 kb on - strand, within mscM at 831.359 kb on - strand, within mscM at 831.427 kb on + strand, within mscM at 831.491 kb on + strand, within mscM at 831.492 kb on - strand, within mscM at 831.492 kb on - strand, within mscM at 831.532 kb on + strand, within mscM at 831.532 kb on + strand, within mscM at 831.533 kb on - strand, within mscM at 831.533 kb on - strand, within mscM at 831.618 kb on + strand, within mscM at 831.669 kb on - strand, within mscM at 832.013 kb on - strand, within mscM at 832.013 kb on - strand, within mscM at 832.013 kb on - strand, within mscM at 832.048 kb on + strand, within mscM at 832.160 kb on + strand, within mscM at 832.208 kb on - strand, within mscM at 832.291 kb on + strand, within mscM at 832.291 kb on + strand, within mscM at 832.292 kb on - strand, within mscM at 832.292 kb on - strand, within mscM at 832.360 kb on + strand, within mscM at 832.381 kb on + strand, within mscM at 832.417 kb on + strand, within mscM at 832.425 kb on + strand, within mscM at 832.425 kb on + strand, within mscM at 832.425 kb on + strand, within mscM at 832.426 kb on - strand, within mscM at 832.448 kb on - strand, within mscM at 832.448 kb on - strand, within mscM at 832.655 kb on - strand at 832.658 kb on + strand at 832.658 kb on + strand at 832.659 kb on - strand at 832.744 kb on + strand at 832.744 kb on + strand at 832.809 kb on + strand at 832.810 kb on - strand at 832.810 kb on - strand at 832.847 kb on + strand at 832.855 kb on - strand at 832.887 kb on + strand at 832.887 kb on + strand at 832.888 kb on - strand at 832.888 kb on - strand at 832.896 kb on - strand at 832.912 kb on - strand at 832.931 kb on - strand at 832.940 kb on - strand at 832.940 kb on - strand at 832.946 kb on + strand at 832.946 kb on + strand at 832.946 kb on + strand at 832.947 kb on - strand at 832.947 kb on - strand at 832.947 kb on - strand at 832.947 kb on - strand at 832.947 kb on - strand at 832.995 kb on + strand at 832.996 kb on - strand at 832.996 kb on - strand at 832.996 kb on - strand at 833.013 kb on - strand at 833.013 kb on - strand at 833.013 kb on - strand at 833.043 kb on + strand at 833.044 kb on - strand at 833.044 kb on - strand at 833.044 kb on - strand at 833.044 kb on - strand at 833.209 kb on + strand, within yjeM at 833.210 kb on - strand, within yjeM at 833.210 kb on - strand, within yjeM at 833.290 kb on - strand, within yjeM at 833.303 kb on - strand, within yjeM at 833.303 kb on - strand, within yjeM at 833.417 kb on - strand, within yjeM at 833.506 kb on - strand, within yjeM at 833.530 kb on + strand, within yjeM at 833.532 kb on + strand, within yjeM at 833.561 kb on - strand, within yjeM at 833.574 kb on - strand, within yjeM at 833.652 kb on + strand, within yjeM at 833.652 kb on + strand, within yjeM at 833.652 kb on + strand, within yjeM at 833.652 kb on + strand, within yjeM at 833.653 kb on - strand, within yjeM at 833.653 kb on - strand, within yjeM at 833.653 kb on - strand, within yjeM at 833.653 kb on - strand, within yjeM at 833.653 kb on - strand, within yjeM at 833.653 kb on - strand, within yjeM at 833.656 kb on + strand, within yjeM at 833.657 kb on - strand, within yjeM at 833.657 kb on - strand, within yjeM at 833.657 kb on - strand, within yjeM at 833.657 kb on - strand, within yjeM at 833.659 kb on + strand, within yjeM at 833.659 kb on + strand, within yjeM at 833.684 kb on - strand, within yjeM at 833.684 kb on - strand, within yjeM at 833.687 kb on + strand, within yjeM at 833.687 kb on + strand, within yjeM at 833.687 kb on + strand, within yjeM at 833.688 kb on - strand, within yjeM at 833.688 kb on - strand, within yjeM at 833.688 kb on - strand, within yjeM at 833.691 kb on - strand, within yjeM at 833.759 kb on - strand, within yjeM
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 829,389 + asd NOLOHH_04585 0.88 -0.3 829,502 + +0.3 829,502 + +1.3 829,502 + -0.5 829,683 + -0.8 829,683 + -0.5 829,683 + -0.3 829,751 + +0.2 829,785 + -1.0 829,792 + -0.8 829,793 - +0.7 829,793 - -0.0 829,980 + mscM NOLOHH_04590 0.14 -0.3 829,981 - mscM NOLOHH_04590 0.14 -0.3 829,981 - mscM NOLOHH_04590 0.14 -1.6 829,981 - mscM NOLOHH_04590 0.14 -0.4 829,981 - mscM NOLOHH_04590 0.14 -1.7 829,981 - mscM NOLOHH_04590 0.14 -0.9 829,981 - mscM NOLOHH_04590 0.14 -0.1 829,981 - mscM NOLOHH_04590 0.14 +1.2 830,012 - mscM NOLOHH_04590 0.15 +1.7 830,021 - mscM NOLOHH_04590 0.15 -0.6 830,143 - mscM NOLOHH_04590 0.19 +1.9 830,143 - mscM NOLOHH_04590 0.19 +0.1 830,186 + mscM NOLOHH_04590 0.20 -0.8 830,187 - mscM NOLOHH_04590 0.20 -0.3 830,187 - mscM NOLOHH_04590 0.20 -0.8 830,199 + mscM NOLOHH_04590 0.20 -1.3 830,199 + mscM NOLOHH_04590 0.20 -0.7 830,199 + mscM NOLOHH_04590 0.20 +0.9 830,200 - mscM NOLOHH_04590 0.20 -0.1 830,203 + mscM NOLOHH_04590 0.20 +0.3 830,204 - mscM NOLOHH_04590 0.20 +0.3 830,254 + mscM NOLOHH_04590 0.22 +0.1 830,317 + mscM NOLOHH_04590 0.24 +0.3 830,407 - mscM NOLOHH_04590 0.27 -1.3 830,429 - mscM NOLOHH_04590 0.27 +1.7 830,569 - mscM NOLOHH_04590 0.31 +0.6 830,573 + mscM NOLOHH_04590 0.31 +0.1 830,588 - mscM NOLOHH_04590 0.32 +1.3 830,591 - mscM NOLOHH_04590 0.32 +3.1 830,656 + mscM NOLOHH_04590 0.34 -0.1 830,725 - mscM NOLOHH_04590 0.36 +0.0 830,807 + mscM NOLOHH_04590 0.39 +0.7 830,993 - mscM NOLOHH_04590 0.44 -1.6 830,993 - mscM NOLOHH_04590 0.44 -2.1 830,997 - mscM NOLOHH_04590 0.44 +0.7 831,008 + mscM NOLOHH_04590 0.45 -0.5 831,008 + mscM NOLOHH_04590 0.45 -0.6 831,321 - mscM NOLOHH_04590 0.54 +0.4 831,323 + mscM NOLOHH_04590 0.54 -1.1 831,324 - mscM NOLOHH_04590 0.54 -0.6 831,324 - mscM NOLOHH_04590 0.54 -1.7 831,343 + mscM NOLOHH_04590 0.55 -1.2 831,344 - mscM NOLOHH_04590 0.55 +0.1 831,359 - mscM NOLOHH_04590 0.55 +0.0 831,427 + mscM NOLOHH_04590 0.57 +0.7 831,491 + mscM NOLOHH_04590 0.59 +0.7 831,492 - mscM NOLOHH_04590 0.59 -0.4 831,492 - mscM NOLOHH_04590 0.59 -0.5 831,532 + mscM NOLOHH_04590 0.60 +2.1 831,532 + mscM NOLOHH_04590 0.60 -0.2 831,533 - mscM NOLOHH_04590 0.60 -1.8 831,533 - mscM NOLOHH_04590 0.60 -0.8 831,618 + mscM NOLOHH_04590 0.63 +0.0 831,669 - mscM NOLOHH_04590 0.64 -0.0 832,013 - mscM NOLOHH_04590 0.75 +1.1 832,013 - mscM NOLOHH_04590 0.75 +1.1 832,013 - mscM NOLOHH_04590 0.75 +2.3 832,048 + mscM NOLOHH_04590 0.76 +0.1 832,160 + mscM NOLOHH_04590 0.79 -0.3 832,208 - mscM NOLOHH_04590 0.81 +0.0 832,291 + mscM NOLOHH_04590 0.83 +0.5 832,291 + mscM NOLOHH_04590 0.83 -0.1 832,292 - mscM NOLOHH_04590 0.83 -0.1 832,292 - mscM NOLOHH_04590 0.83 -0.1 832,360 + mscM NOLOHH_04590 0.85 +1.5 832,381 + mscM NOLOHH_04590 0.86 +0.2 832,417 + mscM NOLOHH_04590 0.87 -0.5 832,425 + mscM NOLOHH_04590 0.87 -0.4 832,425 + mscM NOLOHH_04590 0.87 -0.3 832,425 + mscM NOLOHH_04590 0.87 +1.6 832,426 - mscM NOLOHH_04590 0.87 +0.7 832,448 - mscM NOLOHH_04590 0.88 +0.7 832,448 - mscM NOLOHH_04590 0.88 +0.9 832,655 - -1.0 832,658 + +1.0 832,658 + +0.4 832,659 - +0.1 832,744 + +0.3 832,744 + -0.8 832,809 + +0.3 832,810 - +0.6 832,810 - -0.8 832,847 + -0.1 832,855 - +0.5 832,887 + +0.3 832,887 + +0.2 832,888 - -0.6 832,888 - -0.1 832,896 - +0.7 832,912 - +0.6 832,931 - +0.3 832,940 - -0.4 832,940 - +0.7 832,946 + +0.4 832,946 + +0.4 832,946 + +0.2 832,947 - -0.3 832,947 - +0.3 832,947 - +0.4 832,947 - +0.7 832,947 - +0.5 832,995 + -0.3 832,996 - +0.1 832,996 - +1.0 832,996 - +0.4 833,013 - -0.5 833,013 - +0.7 833,013 - -0.7 833,043 + -1.1 833,044 - -0.2 833,044 - -0.3 833,044 - -1.0 833,044 - -0.3 833,209 + yjeM NOLOHH_04595 0.14 +0.5 833,210 - yjeM NOLOHH_04595 0.14 -0.1 833,210 - yjeM NOLOHH_04595 0.14 -0.5 833,290 - yjeM NOLOHH_04595 0.20 -0.3 833,303 - yjeM NOLOHH_04595 0.21 -0.5 833,303 - yjeM NOLOHH_04595 0.21 -0.6 833,417 - yjeM NOLOHH_04595 0.29 +0.2 833,506 - yjeM NOLOHH_04595 0.35 +0.2 833,530 + yjeM NOLOHH_04595 0.36 -1.6 833,532 + yjeM NOLOHH_04595 0.36 -1.1 833,561 - yjeM NOLOHH_04595 0.38 +0.7 833,574 - yjeM NOLOHH_04595 0.39 +0.7 833,652 + yjeM NOLOHH_04595 0.45 -0.5 833,652 + yjeM NOLOHH_04595 0.45 -1.1 833,652 + yjeM NOLOHH_04595 0.45 +0.9 833,652 + yjeM NOLOHH_04595 0.45 +1.1 833,653 - yjeM NOLOHH_04595 0.45 -0.5 833,653 - yjeM NOLOHH_04595 0.45 +0.7 833,653 - yjeM NOLOHH_04595 0.45 +0.7 833,653 - yjeM NOLOHH_04595 0.45 -0.1 833,653 - yjeM NOLOHH_04595 0.45 +1.0 833,653 - yjeM NOLOHH_04595 0.45 -0.3 833,656 + yjeM NOLOHH_04595 0.45 -0.6 833,657 - yjeM NOLOHH_04595 0.45 -0.3 833,657 - yjeM NOLOHH_04595 0.45 -0.4 833,657 - yjeM NOLOHH_04595 0.45 -1.7 833,657 - yjeM NOLOHH_04595 0.45 +0.2 833,659 + yjeM NOLOHH_04595 0.45 +0.1 833,659 + yjeM NOLOHH_04595 0.45 -1.6 833,684 - yjeM NOLOHH_04595 0.47 -0.5 833,684 - yjeM NOLOHH_04595 0.47 +0.7 833,687 + yjeM NOLOHH_04595 0.47 +0.2 833,687 + yjeM NOLOHH_04595 0.47 +0.3 833,687 + yjeM NOLOHH_04595 0.47 +0.1 833,688 - yjeM NOLOHH_04595 0.47 -0.8 833,688 - yjeM NOLOHH_04595 0.47 +0.7 833,688 - yjeM NOLOHH_04595 0.47 -0.3 833,691 - yjeM NOLOHH_04595 0.47 -0.3 833,759 - yjeM NOLOHH_04595 0.52 +0.2
Or see this region's nucleotide sequence