Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt queG and yjeV overlap by 18 nucleotides yjeV and Gly_trna are separated by 233 nucleotides Gly_trna and Gly_trna are separated by 35 nucleotides Gly_trna and Gly_trna are separated by 36 nucleotides Gly_trna and orn are separated by 210 nucleotides orn and rsgA are separated by 94 nucleotides
NOLOHH_04550: queG - tRNA epoxyqueuosine(34) reductase QueG, at 824,828 to 825,967
queG
NOLOHH_04555: yjeV - Uncharacterized protein YjeV, at 825,950 to 826,003
yjeV
NOLOHH_04560: Gly_trna - tRNA-Gly(gcc), at 826,237 to 826,312
_trna
NOLOHH_04565: Gly_trna - tRNA-Gly(gcc), at 826,348 to 826,423
_trna
NOLOHH_04570: Gly_trna - tRNA-Gly(gcc), at 826,460 to 826,535
_trna
NOLOHH_04575: orn - oligoribonuclease, at 826,746 to 827,291
orn
NOLOHH_04580: rsgA - small ribosomal subunit biogenesis GTPase RsgA, at 827,386 to 828,438
rsgA
Position (kb) 826
827
828 Strain fitness (log2 ratio) -1
0
1
2 at 825.751 kb on + strand, within queG at 825.751 kb on + strand, within queG at 825.751 kb on + strand, within queG at 825.754 kb on + strand, within queG at 825.768 kb on + strand, within queG at 825.817 kb on + strand, within queG at 825.849 kb on + strand, within queG at 825.849 kb on + strand, within queG at 825.849 kb on + strand, within queG at 825.849 kb on + strand, within queG at 825.849 kb on + strand, within queG at 825.849 kb on + strand, within queG at 825.849 kb on + strand, within queG at 825.849 kb on + strand, within queG at 825.849 kb on + strand, within queG at 825.850 kb on - strand, within queG at 825.873 kb on + strand at 825.874 kb on - strand at 825.894 kb on + strand at 826.131 kb on - strand at 826.159 kb on + strand at 826.222 kb on - strand at 826.331 kb on - strand at 826.538 kb on - strand at 826.541 kb on - strand at 826.541 kb on - strand at 826.541 kb on - strand at 826.687 kb on + strand at 826.727 kb on + strand at 826.727 kb on + strand at 826.727 kb on + strand at 826.758 kb on - strand at 827.319 kb on - strand at 827.319 kb on - strand at 827.319 kb on - strand at 827.321 kb on - strand at 827.321 kb on - strand at 827.341 kb on - strand at 827.341 kb on - strand at 827.345 kb on + strand at 827.345 kb on + strand at 827.345 kb on + strand at 827.345 kb on + strand at 827.345 kb on + strand at 827.345 kb on + strand at 827.345 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 825,751 + queG NOLOHH_04550 0.81 +0.0 825,751 + queG NOLOHH_04550 0.81 +0.2 825,751 + queG NOLOHH_04550 0.81 +0.3 825,754 + queG NOLOHH_04550 0.81 +0.4 825,768 + queG NOLOHH_04550 0.82 -0.3 825,817 + queG NOLOHH_04550 0.87 -0.3 825,849 + queG NOLOHH_04550 0.90 +0.3 825,849 + queG NOLOHH_04550 0.90 +0.4 825,849 + queG NOLOHH_04550 0.90 +0.5 825,849 + queG NOLOHH_04550 0.90 +0.2 825,849 + queG NOLOHH_04550 0.90 -0.3 825,849 + queG NOLOHH_04550 0.90 +0.4 825,849 + queG NOLOHH_04550 0.90 +0.3 825,849 + queG NOLOHH_04550 0.90 -0.8 825,849 + queG NOLOHH_04550 0.90 -0.1 825,850 - queG NOLOHH_04550 0.90 +1.2 825,873 + -0.3 825,874 - +0.2 825,894 + +1.1 826,131 - -1.0 826,159 + +0.7 826,222 - +0.2 826,331 - -0.9 826,538 - +0.1 826,541 - +0.2 826,541 - +0.5 826,541 - -0.4 826,687 + -0.1 826,727 + -1.7 826,727 + +0.9 826,727 + +1.0 826,758 - +0.3 827,319 - +0.0 827,319 - -0.3 827,319 - +2.5 827,321 - +0.9 827,321 - -0.5 827,341 - +0.7 827,341 - -0.8 827,345 + -0.8 827,345 + +0.7 827,345 + -0.4 827,345 + -0.6 827,345 + +0.2 827,345 + +0.5 827,345 + +1.0
Or see this region's nucleotide sequence