Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rsmC and Leu_trna are separated by 267 nucleotides Leu_trna and Leu_trna are separated by 28 nucleotides Leu_trna and Leu_trna are separated by 34 nucleotides Leu_trna and yjjZ are separated by 38 nucleotides yjjZ and fhuF are separated by 140 nucleotides fhuF and bglJ are separated by 37 nucleotides
NOLOHH_03620: rsmC - 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC, at 643,436 to 644,467
rsmC
NOLOHH_03625: Leu_trna - tRNA-Leu(cag), at 644,735 to 644,821
_trna
NOLOHH_03630: Leu_trna - tRNA-Leu(cag), at 644,850 to 644,936
_trna
NOLOHH_03635: Leu_trna - tRNA-Leu(cag), at 644,971 to 645,057
_trna
NOLOHH_03640: yjjZ - Uncharacterized protein YjjZ, at 645,096 to 645,332
yjjZ
NOLOHH_03645: fhuF - siderophore-iron reductase FhuF, at 645,473 to 646,261
fhuF
NOLOHH_03650: bglJ - DNA-binding transcriptional activator BglJ, at 646,299 to 646,976
bglJ
Position (kb) 645
646 Strain fitness (log2 ratio) -2
-1
0
1
2 at 644.133 kb on + strand, within rsmC at 644.133 kb on + strand, within rsmC at 644.133 kb on + strand, within rsmC at 644.225 kb on - strand, within rsmC at 644.314 kb on + strand, within rsmC at 644.315 kb on - strand, within rsmC at 644.315 kb on - strand, within rsmC at 644.315 kb on - strand, within rsmC at 644.340 kb on + strand, within rsmC at 644.429 kb on + strand at 644.440 kb on + strand at 644.466 kb on - strand at 644.466 kb on - strand at 644.466 kb on - strand at 644.469 kb on + strand at 644.470 kb on - strand at 644.535 kb on - strand at 644.553 kb on + strand at 644.553 kb on + strand at 644.554 kb on - strand at 644.612 kb on + strand at 644.612 kb on + strand at 644.613 kb on - strand at 644.643 kb on - strand at 644.643 kb on - strand at 644.656 kb on + strand at 644.657 kb on - strand at 644.660 kb on + strand at 644.660 kb on + strand at 644.660 kb on + strand at 644.660 kb on + strand at 644.660 kb on + strand at 644.660 kb on + strand at 644.660 kb on + strand at 644.661 kb on - strand at 644.661 kb on - strand at 644.661 kb on - strand at 644.688 kb on + strand at 645.060 kb on + strand at 645.060 kb on + strand at 645.066 kb on + strand at 645.066 kb on + strand at 645.169 kb on + strand, within yjjZ at 645.170 kb on - strand, within yjjZ at 645.191 kb on - strand, within yjjZ at 645.214 kb on - strand, within yjjZ at 645.253 kb on - strand, within yjjZ at 645.263 kb on - strand, within yjjZ at 645.263 kb on - strand, within yjjZ at 645.320 kb on + strand at 645.321 kb on - strand at 645.321 kb on - strand at 645.464 kb on - strand at 645.498 kb on - strand at 645.498 kb on - strand at 645.508 kb on + strand at 645.509 kb on - strand at 645.558 kb on + strand, within fhuF at 645.559 kb on - strand, within fhuF at 645.669 kb on + strand, within fhuF at 645.689 kb on + strand, within fhuF at 645.690 kb on - strand, within fhuF at 645.690 kb on - strand, within fhuF at 645.700 kb on + strand, within fhuF at 645.700 kb on + strand, within fhuF at 645.701 kb on - strand, within fhuF at 645.701 kb on - strand, within fhuF at 645.701 kb on - strand, within fhuF at 645.701 kb on - strand, within fhuF at 645.701 kb on - strand, within fhuF at 645.704 kb on + strand, within fhuF at 645.705 kb on - strand, within fhuF at 645.705 kb on - strand, within fhuF at 645.767 kb on + strand, within fhuF at 645.767 kb on + strand, within fhuF at 645.767 kb on + strand, within fhuF at 645.767 kb on + strand, within fhuF at 645.767 kb on + strand, within fhuF at 645.767 kb on + strand, within fhuF at 645.767 kb on + strand, within fhuF at 645.767 kb on + strand, within fhuF at 645.768 kb on - strand, within fhuF at 645.768 kb on - strand, within fhuF at 645.768 kb on - strand, within fhuF at 645.768 kb on - strand, within fhuF at 645.825 kb on + strand, within fhuF at 645.826 kb on - strand, within fhuF at 645.826 kb on - strand, within fhuF at 645.987 kb on + strand, within fhuF at 645.988 kb on - strand, within fhuF at 645.988 kb on - strand, within fhuF at 646.027 kb on + strand, within fhuF at 646.027 kb on + strand, within fhuF at 646.028 kb on - strand, within fhuF at 646.028 kb on - strand, within fhuF at 646.037 kb on + strand, within fhuF at 646.052 kb on + strand, within fhuF at 646.052 kb on + strand, within fhuF at 646.053 kb on - strand, within fhuF at 646.057 kb on + strand, within fhuF at 646.057 kb on + strand, within fhuF at 646.058 kb on - strand, within fhuF at 646.136 kb on - strand, within fhuF at 646.136 kb on - strand, within fhuF at 646.147 kb on + strand, within fhuF at 646.147 kb on + strand, within fhuF at 646.250 kb on - strand at 646.250 kb on - strand at 646.290 kb on + strand at 646.304 kb on - strand at 646.319 kb on + strand at 646.320 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 644,133 + rsmC NOLOHH_03620 0.68 -0.5 644,133 + rsmC NOLOHH_03620 0.68 -1.2 644,133 + rsmC NOLOHH_03620 0.68 -0.6 644,225 - rsmC NOLOHH_03620 0.76 -1.9 644,314 + rsmC NOLOHH_03620 0.85 +1.9 644,315 - rsmC NOLOHH_03620 0.85 +0.0 644,315 - rsmC NOLOHH_03620 0.85 +0.4 644,315 - rsmC NOLOHH_03620 0.85 -0.0 644,340 + rsmC NOLOHH_03620 0.88 -0.4 644,429 + -0.7 644,440 + -1.1 644,466 - -0.2 644,466 - -2.3 644,466 - -0.6 644,469 + +1.7 644,470 - +0.2 644,535 - +1.4 644,553 + -0.1 644,553 + -0.5 644,554 - +1.3 644,612 + -1.3 644,612 + -1.3 644,613 - +0.4 644,643 - +0.4 644,643 - +0.3 644,656 + -0.5 644,657 - -0.3 644,660 + -1.1 644,660 + -0.3 644,660 + +0.3 644,660 + -0.3 644,660 + -2.0 644,660 + -2.2 644,660 + +0.2 644,661 - -1.4 644,661 - -0.7 644,661 - -0.4 644,688 + +0.1 645,060 + -1.0 645,060 + -2.5 645,066 + -0.9 645,066 + -0.2 645,169 + yjjZ NOLOHH_03640 0.31 -1.9 645,170 - yjjZ NOLOHH_03640 0.31 -2.3 645,191 - yjjZ NOLOHH_03640 0.40 -0.9 645,214 - yjjZ NOLOHH_03640 0.50 +1.5 645,253 - yjjZ NOLOHH_03640 0.66 +0.2 645,263 - yjjZ NOLOHH_03640 0.70 +0.5 645,263 - yjjZ NOLOHH_03640 0.70 +0.6 645,320 + -0.0 645,321 - -0.6 645,321 - +1.7 645,464 - +0.3 645,498 - +0.3 645,498 - +0.3 645,508 + +0.9 645,509 - -1.3 645,558 + fhuF NOLOHH_03645 0.11 -0.7 645,559 - fhuF NOLOHH_03645 0.11 -1.2 645,669 + fhuF NOLOHH_03645 0.25 -1.9 645,689 + fhuF NOLOHH_03645 0.27 -0.6 645,690 - fhuF NOLOHH_03645 0.28 +0.8 645,690 - fhuF NOLOHH_03645 0.28 +0.2 645,700 + fhuF NOLOHH_03645 0.29 +0.3 645,700 + fhuF NOLOHH_03645 0.29 -0.0 645,701 - fhuF NOLOHH_03645 0.29 +0.9 645,701 - fhuF NOLOHH_03645 0.29 -0.6 645,701 - fhuF NOLOHH_03645 0.29 +0.4 645,701 - fhuF NOLOHH_03645 0.29 -0.3 645,701 - fhuF NOLOHH_03645 0.29 +0.4 645,704 + fhuF NOLOHH_03645 0.29 +0.1 645,705 - fhuF NOLOHH_03645 0.29 -0.6 645,705 - fhuF NOLOHH_03645 0.29 -1.0 645,767 + fhuF NOLOHH_03645 0.37 -0.6 645,767 + fhuF NOLOHH_03645 0.37 +0.5 645,767 + fhuF NOLOHH_03645 0.37 +0.5 645,767 + fhuF NOLOHH_03645 0.37 -0.0 645,767 + fhuF NOLOHH_03645 0.37 -0.6 645,767 + fhuF NOLOHH_03645 0.37 +0.3 645,767 + fhuF NOLOHH_03645 0.37 +1.4 645,767 + fhuF NOLOHH_03645 0.37 +0.3 645,768 - fhuF NOLOHH_03645 0.37 -1.3 645,768 - fhuF NOLOHH_03645 0.37 +0.7 645,768 - fhuF NOLOHH_03645 0.37 -0.3 645,768 - fhuF NOLOHH_03645 0.37 +0.7 645,825 + fhuF NOLOHH_03645 0.45 +0.6 645,826 - fhuF NOLOHH_03645 0.45 +0.3 645,826 - fhuF NOLOHH_03645 0.45 +0.3 645,987 + fhuF NOLOHH_03645 0.65 +0.1 645,988 - fhuF NOLOHH_03645 0.65 -1.2 645,988 - fhuF NOLOHH_03645 0.65 -0.3 646,027 + fhuF NOLOHH_03645 0.70 -1.3 646,027 + fhuF NOLOHH_03645 0.70 -0.6 646,028 - fhuF NOLOHH_03645 0.70 +0.4 646,028 - fhuF NOLOHH_03645 0.70 -0.1 646,037 + fhuF NOLOHH_03645 0.71 +0.6 646,052 + fhuF NOLOHH_03645 0.73 +0.9 646,052 + fhuF NOLOHH_03645 0.73 +0.4 646,053 - fhuF NOLOHH_03645 0.74 -0.5 646,057 + fhuF NOLOHH_03645 0.74 +0.7 646,057 + fhuF NOLOHH_03645 0.74 +0.2 646,058 - fhuF NOLOHH_03645 0.74 +0.3 646,136 - fhuF NOLOHH_03645 0.84 -0.7 646,136 - fhuF NOLOHH_03645 0.84 -0.1 646,147 + fhuF NOLOHH_03645 0.85 +0.7 646,147 + fhuF NOLOHH_03645 0.85 +0.6 646,250 - +0.3 646,250 - -0.9 646,290 + -0.4 646,304 - +0.7 646,319 + +1.2 646,320 - +0.7
Or see this region's nucleotide sequence