Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt radA and serB are separated by 48 nucleotides serB and lplA are separated by 105 nucleotides lplA and lplA are separated by 27 nucleotides
NOLOHH_03520: radA - DNA repair protein RadA, at 623,887 to 625,269
radA
NOLOHH_03525: serB - phosphoserine phosphatase, at 625,318 to 626,286
serB
NOLOHH_03530: lplA - YtjB family periplasmic protein, at 626,392 to 627,036
lplA
NOLOHH_03535: lplA - lipoate--protein ligase LplA, at 627,064 to 628,080
lplA
Position (kb) 625
626
627 Strain fitness (log2 ratio) -2
-1
0
1
2 at 624.562 kb on - strand, within radA at 624.562 kb on - strand, within radA at 624.580 kb on - strand, within radA at 624.607 kb on + strand, within radA at 624.662 kb on + strand, within radA at 624.709 kb on + strand, within radA at 624.709 kb on + strand, within radA at 624.709 kb on + strand, within radA at 624.710 kb on - strand, within radA at 624.710 kb on - strand, within radA at 624.710 kb on - strand, within radA at 624.720 kb on + strand, within radA at 624.720 kb on + strand, within radA at 624.720 kb on + strand, within radA at 624.721 kb on - strand, within radA at 624.721 kb on - strand, within radA at 624.745 kb on + strand, within radA at 624.745 kb on + strand, within radA at 624.746 kb on - strand, within radA at 624.746 kb on - strand, within radA at 624.746 kb on - strand, within radA at 624.746 kb on - strand, within radA at 624.746 kb on - strand, within radA at 624.813 kb on + strand, within radA at 624.813 kb on + strand, within radA at 624.813 kb on + strand, within radA at 624.813 kb on + strand, within radA at 624.813 kb on + strand, within radA at 624.814 kb on - strand, within radA at 624.814 kb on - strand, within radA at 624.890 kb on + strand, within radA at 624.891 kb on - strand, within radA at 624.891 kb on - strand, within radA at 624.891 kb on - strand, within radA at 624.891 kb on - strand, within radA at 624.891 kb on - strand, within radA at 625.006 kb on + strand, within radA at 625.006 kb on + strand, within radA at 625.010 kb on - strand, within radA at 625.010 kb on - strand, within radA at 625.236 kb on + strand at 625.237 kb on - strand at 625.274 kb on + strand at 625.274 kb on + strand at 625.274 kb on + strand at 625.274 kb on + strand at 625.274 kb on + strand at 625.319 kb on + strand at 625.320 kb on - strand at 625.465 kb on - strand, within serB at 625.465 kb on - strand, within serB at 625.509 kb on - strand, within serB at 625.544 kb on + strand, within serB at 625.544 kb on + strand, within serB at 625.544 kb on + strand, within serB at 625.649 kb on + strand, within serB at 625.650 kb on - strand, within serB at 625.825 kb on - strand, within serB at 625.908 kb on + strand, within serB at 625.908 kb on + strand, within serB at 625.908 kb on + strand, within serB at 625.908 kb on + strand, within serB at 625.909 kb on - strand, within serB at 625.909 kb on - strand, within serB at 625.909 kb on - strand, within serB at 625.909 kb on - strand, within serB at 625.909 kb on - strand, within serB at 626.026 kb on - strand, within serB at 626.066 kb on + strand, within serB at 626.067 kb on - strand, within serB at 626.124 kb on - strand, within serB at 626.143 kb on - strand, within serB at 626.159 kb on + strand, within serB at 626.159 kb on + strand, within serB at 626.159 kb on + strand, within serB at 626.159 kb on + strand, within serB at 626.160 kb on - strand, within serB at 626.160 kb on - strand, within serB at 626.160 kb on - strand, within serB at 626.189 kb on + strand, within serB at 626.218 kb on + strand at 626.218 kb on + strand at 626.219 kb on - strand at 626.275 kb on - strand at 626.275 kb on - strand at 626.287 kb on + strand at 626.299 kb on - strand at 626.322 kb on + strand at 626.342 kb on + strand at 626.364 kb on + strand at 626.364 kb on + strand at 626.364 kb on + strand at 626.364 kb on + strand at 626.365 kb on - strand at 626.365 kb on - strand at 626.365 kb on - strand at 626.365 kb on - strand at 626.365 kb on - strand at 626.365 kb on - strand at 626.491 kb on - strand, within lplA at 626.514 kb on + strand, within lplA at 626.514 kb on + strand, within lplA at 626.514 kb on + strand, within lplA at 626.514 kb on + strand, within lplA at 626.515 kb on - strand, within lplA at 626.558 kb on + strand, within lplA at 626.559 kb on - strand, within lplA at 626.668 kb on + strand, within lplA at 626.669 kb on - strand, within lplA at 626.669 kb on - strand, within lplA at 626.669 kb on - strand, within lplA at 626.669 kb on - strand, within lplA at 626.669 kb on - strand, within lplA at 626.669 kb on - strand, within lplA at 626.763 kb on + strand, within lplA at 626.763 kb on + strand, within lplA at 626.763 kb on + strand, within lplA at 626.838 kb on + strand, within lplA at 626.838 kb on + strand, within lplA at 626.838 kb on + strand, within lplA at 626.839 kb on - strand, within lplA at 626.839 kb on - strand, within lplA at 626.886 kb on - strand, within lplA at 626.943 kb on - strand, within lplA at 627.042 kb on + strand at 627.043 kb on - strand at 627.045 kb on + strand at 627.045 kb on + strand at 627.046 kb on - strand at 627.063 kb on + strand at 627.063 kb on + strand at 627.063 kb on + strand at 627.064 kb on - strand at 627.074 kb on + strand at 627.097 kb on + strand at 627.098 kb on - strand at 627.132 kb on + strand at 627.194 kb on + strand, within lplA at 627.231 kb on + strand, within lplA at 627.231 kb on + strand, within lplA at 627.232 kb on - strand, within lplA at 627.232 kb on - strand, within lplA at 627.255 kb on + strand, within lplA at 627.255 kb on + strand, within lplA at 627.256 kb on - strand, within lplA at 627.256 kb on - strand, within lplA at 627.279 kb on + strand, within lplA
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 624,562 - radA NOLOHH_03520 0.49 -0.1 624,562 - radA NOLOHH_03520 0.49 +0.5 624,580 - radA NOLOHH_03520 0.50 -1.2 624,607 + radA NOLOHH_03520 0.52 +1.0 624,662 + radA NOLOHH_03520 0.56 +0.1 624,709 + radA NOLOHH_03520 0.59 -0.7 624,709 + radA NOLOHH_03520 0.59 +0.4 624,709 + radA NOLOHH_03520 0.59 -0.8 624,710 - radA NOLOHH_03520 0.60 -0.1 624,710 - radA NOLOHH_03520 0.60 -0.3 624,710 - radA NOLOHH_03520 0.60 -1.3 624,720 + radA NOLOHH_03520 0.60 -1.1 624,720 + radA NOLOHH_03520 0.60 +0.8 624,720 + radA NOLOHH_03520 0.60 -0.9 624,721 - radA NOLOHH_03520 0.60 +1.4 624,721 - radA NOLOHH_03520 0.60 -1.1 624,745 + radA NOLOHH_03520 0.62 +0.0 624,745 + radA NOLOHH_03520 0.62 +0.3 624,746 - radA NOLOHH_03520 0.62 -0.2 624,746 - radA NOLOHH_03520 0.62 -0.6 624,746 - radA NOLOHH_03520 0.62 -0.9 624,746 - radA NOLOHH_03520 0.62 -0.9 624,746 - radA NOLOHH_03520 0.62 +0.7 624,813 + radA NOLOHH_03520 0.67 -1.2 624,813 + radA NOLOHH_03520 0.67 +0.7 624,813 + radA NOLOHH_03520 0.67 +1.0 624,813 + radA NOLOHH_03520 0.67 -0.9 624,813 + radA NOLOHH_03520 0.67 +0.1 624,814 - radA NOLOHH_03520 0.67 +0.4 624,814 - radA NOLOHH_03520 0.67 +0.0 624,890 + radA NOLOHH_03520 0.73 -0.2 624,891 - radA NOLOHH_03520 0.73 -0.1 624,891 - radA NOLOHH_03520 0.73 +0.3 624,891 - radA NOLOHH_03520 0.73 -1.7 624,891 - radA NOLOHH_03520 0.73 -0.7 624,891 - radA NOLOHH_03520 0.73 -0.3 625,006 + radA NOLOHH_03520 0.81 -1.0 625,006 + radA NOLOHH_03520 0.81 -0.3 625,010 - radA NOLOHH_03520 0.81 -0.2 625,010 - radA NOLOHH_03520 0.81 +0.1 625,236 + -0.5 625,237 - +0.5 625,274 + -0.9 625,274 + +0.3 625,274 + -0.8 625,274 + -0.3 625,274 + +0.7 625,319 + -0.4 625,320 - -1.7 625,465 - serB NOLOHH_03525 0.15 -0.0 625,465 - serB NOLOHH_03525 0.15 +1.0 625,509 - serB NOLOHH_03525 0.20 +1.1 625,544 + serB NOLOHH_03525 0.23 +1.3 625,544 + serB NOLOHH_03525 0.23 -2.1 625,544 + serB NOLOHH_03525 0.23 +0.4 625,649 + serB NOLOHH_03525 0.34 -1.3 625,650 - serB NOLOHH_03525 0.34 -1.3 625,825 - serB NOLOHH_03525 0.52 +1.4 625,908 + serB NOLOHH_03525 0.61 +1.7 625,908 + serB NOLOHH_03525 0.61 -0.4 625,908 + serB NOLOHH_03525 0.61 +0.4 625,908 + serB NOLOHH_03525 0.61 -1.4 625,909 - serB NOLOHH_03525 0.61 +0.4 625,909 - serB NOLOHH_03525 0.61 +1.0 625,909 - serB NOLOHH_03525 0.61 +0.7 625,909 - serB NOLOHH_03525 0.61 -1.3 625,909 - serB NOLOHH_03525 0.61 +0.2 626,026 - serB NOLOHH_03525 0.73 -0.3 626,066 + serB NOLOHH_03525 0.77 -0.7 626,067 - serB NOLOHH_03525 0.77 -0.3 626,124 - serB NOLOHH_03525 0.83 +0.7 626,143 - serB NOLOHH_03525 0.85 -0.9 626,159 + serB NOLOHH_03525 0.87 -0.0 626,159 + serB NOLOHH_03525 0.87 +1.1 626,159 + serB NOLOHH_03525 0.87 +0.7 626,159 + serB NOLOHH_03525 0.87 -1.1 626,160 - serB NOLOHH_03525 0.87 -0.9 626,160 - serB NOLOHH_03525 0.87 +0.7 626,160 - serB NOLOHH_03525 0.87 +0.1 626,189 + serB NOLOHH_03525 0.90 +0.4 626,218 + -0.9 626,218 + -1.4 626,219 - +1.3 626,275 - +1.1 626,275 - +1.3 626,287 + +0.1 626,299 - +0.5 626,322 + +0.0 626,342 + +1.2 626,364 + +0.4 626,364 + -0.1 626,364 + -0.4 626,364 + -1.6 626,365 - +0.9 626,365 - -0.3 626,365 - +0.5 626,365 - -0.4 626,365 - +0.1 626,365 - -0.3 626,491 - lplA NOLOHH_03530 0.15 -0.7 626,514 + lplA NOLOHH_03530 0.19 -0.9 626,514 + lplA NOLOHH_03530 0.19 -0.9 626,514 + lplA NOLOHH_03530 0.19 -0.5 626,514 + lplA NOLOHH_03530 0.19 -0.1 626,515 - lplA NOLOHH_03530 0.19 -0.1 626,558 + lplA NOLOHH_03530 0.26 +0.1 626,559 - lplA NOLOHH_03530 0.26 -0.3 626,668 + lplA NOLOHH_03530 0.43 +0.7 626,669 - lplA NOLOHH_03530 0.43 -0.6 626,669 - lplA NOLOHH_03530 0.43 +0.0 626,669 - lplA NOLOHH_03530 0.43 -0.1 626,669 - lplA NOLOHH_03530 0.43 +0.1 626,669 - lplA NOLOHH_03530 0.43 -0.0 626,669 - lplA NOLOHH_03530 0.43 +0.9 626,763 + lplA NOLOHH_03530 0.58 +1.1 626,763 + lplA NOLOHH_03530 0.58 -0.0 626,763 + lplA NOLOHH_03530 0.58 +0.5 626,838 + lplA NOLOHH_03530 0.69 -1.5 626,838 + lplA NOLOHH_03530 0.69 -1.1 626,838 + lplA NOLOHH_03530 0.69 +0.4 626,839 - lplA NOLOHH_03530 0.69 +0.3 626,839 - lplA NOLOHH_03530 0.69 -0.5 626,886 - lplA NOLOHH_03530 0.77 +0.3 626,943 - lplA NOLOHH_03530 0.85 +1.5 627,042 + +0.1 627,043 - -0.6 627,045 + -2.0 627,045 + +0.5 627,046 - +0.7 627,063 + +0.2 627,063 + +0.1 627,063 + +0.3 627,064 - -0.0 627,074 + -1.4 627,097 + -0.4 627,098 - +0.1 627,132 + +0.7 627,194 + lplA NOLOHH_03535 0.13 +0.1 627,231 + lplA NOLOHH_03535 0.16 +0.7 627,231 + lplA NOLOHH_03535 0.16 +1.1 627,232 - lplA NOLOHH_03535 0.17 +0.5 627,232 - lplA NOLOHH_03535 0.17 +0.1 627,255 + lplA NOLOHH_03535 0.19 +1.6 627,255 + lplA NOLOHH_03535 0.19 +1.9 627,256 - lplA NOLOHH_03535 0.19 -0.3 627,256 - lplA NOLOHH_03535 0.19 +0.1 627,279 + lplA NOLOHH_03535 0.21 +0.5
Or see this region's nucleotide sequence