Strain Fitness in Escherichia coli ECOR27 around NOLOHH_24420

Experiment: TP12

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_24410 and NOLOHH_24415 are separated by 120 nucleotidesNOLOHH_24415 and NOLOHH_24420 are separated by 75 nucleotides NOLOHH_24410: NOLOHH_24410 - PapC/FimD family outer membrane usher protein, at 27,106 to 29,616 _24410 NOLOHH_24415: NOLOHH_24415 - fimbrial protein, at 29,737 to 30,324 _24415 NOLOHH_24420: NOLOHH_24420 - F7-2 fimbrial protein, at 30,400 to 30,927 _24420 Position (kb) 30 31Strain fitness (log2 ratio) -2 -1 0 1 2at 29.454 kb on + strandat 29.687 kb on - strandat 29.690 kb on - strandat 29.854 kb on + strand, within NOLOHH_24415at 29.894 kb on + strand, within NOLOHH_24415at 30.006 kb on - strand, within NOLOHH_24415at 30.089 kb on - strand, within NOLOHH_24415at 30.089 kb on - strand, within NOLOHH_24415at 30.151 kb on - strand, within NOLOHH_24415at 30.329 kb on + strandat 30.336 kb on + strandat 30.377 kb on - strandat 30.408 kb on - strandat 30.483 kb on + strand, within NOLOHH_24420at 30.483 kb on + strand, within NOLOHH_24420at 30.489 kb on - strand, within NOLOHH_24420at 30.580 kb on + strand, within NOLOHH_24420at 30.580 kb on + strand, within NOLOHH_24420at 30.581 kb on - strand, within NOLOHH_24420at 30.581 kb on - strand, within NOLOHH_24420at 30.581 kb on - strand, within NOLOHH_24420at 30.604 kb on - strand, within NOLOHH_24420at 30.604 kb on - strand, within NOLOHH_24420at 30.606 kb on + strand, within NOLOHH_24420at 30.639 kb on + strand, within NOLOHH_24420at 30.640 kb on - strand, within NOLOHH_24420at 30.700 kb on - strand, within NOLOHH_24420at 30.827 kb on - strand, within NOLOHH_24420at 31.003 kb on - strandat 31.451 kb on + strandat 31.562 kb on + strandat 31.562 kb on + strandat 31.563 kb on - strandat 31.563 kb on - strandat 31.568 kb on + strandat 31.573 kb on - strandat 31.641 kb on + strandat 31.641 kb on + strandat 31.847 kb on + strandat 31.879 kb on + strandat 31.879 kb on + strandat 31.879 kb on + strandat 31.883 kb on + strandat 31.912 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TP12
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29,454 + -1.5
29,687 - +0.3
29,690 - +0.5
29,854 + NOLOHH_24415 0.20 +0.9
29,894 + NOLOHH_24415 0.27 +0.0
30,006 - NOLOHH_24415 0.46 +0.2
30,089 - NOLOHH_24415 0.60 -1.0
30,089 - NOLOHH_24415 0.60 +0.7
30,151 - NOLOHH_24415 0.70 -1.1
30,329 + -0.5
30,336 + -1.1
30,377 - +1.1
30,408 - -0.5
30,483 + NOLOHH_24420 0.16 -1.5
30,483 + NOLOHH_24420 0.16 -1.0
30,489 - NOLOHH_24420 0.17 -0.5
30,580 + NOLOHH_24420 0.34 +1.9
30,580 + NOLOHH_24420 0.34 -0.9
30,581 - NOLOHH_24420 0.34 +0.1
30,581 - NOLOHH_24420 0.34 -1.3
30,581 - NOLOHH_24420 0.34 +0.5
30,604 - NOLOHH_24420 0.39 -1.7
30,604 - NOLOHH_24420 0.39 +0.5
30,606 + NOLOHH_24420 0.39 +0.5
30,639 + NOLOHH_24420 0.45 -0.3
30,640 - NOLOHH_24420 0.45 -0.9
30,700 - NOLOHH_24420 0.57 -1.5
30,827 - NOLOHH_24420 0.81 -1.3
31,003 - -0.5
31,451 + +0.5
31,562 + +0.5
31,562 + +1.9
31,563 - +0.1
31,563 - +0.5
31,568 + -2.5
31,573 - +1.0
31,641 + +1.8
31,641 + +0.0
31,847 + +0.2
31,879 + -0.9
31,879 + -1.6
31,879 + -0.1
31,883 + -0.9
31,912 + +0.9

Or see this region's nucleotide sequence