Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_24115 and tnp-IS3 are separated by 244 nucleotides tnp-IS3 and tnp-IS3 overlap by 4 nucleotides tnp-IS3 and yhhI are separated by 93 nucleotides yhhI and NOLOHH_24135 are separated by 44 nucleotides
NOLOHH_24115: NOLOHH_24115 - hypothetical protein, at 4,754,526 to 4,754,969
_24115
NOLOHH_24120: tnp-IS3 - IS3 family IS3 transposase, at 4,755,214 to 4,755,513
tnp-IS3
NOLOHH_24125: tnp-IS3 - IS3 family transposase, at 4,755,510 to 4,756,376
tnp-IS3
NOLOHH_24130: yhhI - ISAs1 family transposase, at 4,756,470 to 4,757,327
yhhI
NOLOHH_24135: NOLOHH_24135 - H repeat-associated protein yhhi (Orf-h), at 4,757,372 to 4,757,428
_24135
Position (kb) 4755
4756
4757 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4754.867 kb on + strand, within NOLOHH_24115 at 4754.968 kb on - strand at 4754.986 kb on + strand at 4755.057 kb on + strand at 4755.057 kb on + strand at 4755.057 kb on + strand at 4755.128 kb on + strand at 4755.128 kb on + strand at 4756.391 kb on + strand at 4756.391 kb on + strand at 4756.424 kb on - strand at 4757.258 kb on + strand at 4757.371 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 4,754,867 + NOLOHH_24115 0.77 -0.5 4,754,968 - -2.9 4,754,986 + -2.3 4,755,057 + -0.9 4,755,057 + +0.4 4,755,057 + -1.0 4,755,128 + +1.7 4,755,128 + -0.9 4,756,391 + +0.7 4,756,391 + +1.7 4,756,424 - +0.7 4,757,258 + -1.3 4,757,371 + -1.3
Or see this region's nucleotide sequence