Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt wrbA and yccJ are separated by 20 nucleotides yccJ and agp are separated by 37 nucleotides agp and yccE are separated by 292 nucleotides
NOLOHH_21555: wrbA - NAD(P)H:quinone oxidoreductase, at 4,235,934 to 4,236,530
wrbA
NOLOHH_21560: yccJ - Uncharacterized protein YccJ, at 4,236,551 to 4,236,778
yccJ
NOLOHH_21565: agp - bifunctional glucose-1-phosphatase/inositol phosphatase, at 4,236,816 to 4,238,057
agp
NOLOHH_21570: yccE - YccE family protein, at 4,238,350 to 4,239,606
yccE
Position (kb) 4236
4237
4238
4239 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4235.882 kb on + strand at 4235.913 kb on + strand at 4235.958 kb on + strand at 4235.967 kb on + strand at 4235.975 kb on + strand at 4235.976 kb on - strand at 4236.242 kb on - strand, within wrbA at 4236.244 kb on - strand, within wrbA at 4236.302 kb on + strand, within wrbA at 4236.343 kb on + strand, within wrbA at 4236.343 kb on + strand, within wrbA at 4236.474 kb on - strand at 4236.495 kb on + strand at 4236.496 kb on - strand at 4236.546 kb on + strand at 4236.702 kb on + strand, within yccJ at 4236.718 kb on + strand, within yccJ at 4236.818 kb on - strand at 4236.952 kb on - strand, within agp at 4236.952 kb on - strand, within agp at 4236.977 kb on - strand, within agp at 4236.977 kb on - strand, within agp at 4237.143 kb on - strand, within agp at 4237.189 kb on + strand, within agp at 4237.190 kb on - strand, within agp at 4237.190 kb on - strand, within agp at 4237.340 kb on - strand, within agp at 4237.362 kb on + strand, within agp at 4237.363 kb on - strand, within agp at 4237.414 kb on + strand, within agp at 4237.415 kb on - strand, within agp at 4237.415 kb on - strand, within agp at 4237.415 kb on - strand, within agp at 4237.490 kb on - strand, within agp at 4237.517 kb on - strand, within agp at 4237.517 kb on - strand, within agp at 4237.658 kb on + strand, within agp at 4237.735 kb on + strand, within agp at 4237.735 kb on + strand, within agp at 4237.805 kb on - strand, within agp at 4237.805 kb on - strand, within agp at 4237.805 kb on - strand, within agp at 4237.805 kb on - strand, within agp at 4237.817 kb on - strand, within agp at 4237.890 kb on - strand, within agp at 4237.932 kb on + strand, within agp at 4237.933 kb on - strand at 4238.161 kb on - strand at 4238.165 kb on - strand at 4238.165 kb on - strand at 4238.165 kb on - strand at 4238.165 kb on - strand at 4238.165 kb on - strand at 4238.199 kb on + strand at 4238.200 kb on - strand at 4238.369 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 4,235,882 + +0.7 4,235,913 + +1.0 4,235,958 + +0.4 4,235,967 + +0.7 4,235,975 + -0.3 4,235,976 - +0.7 4,236,242 - wrbA NOLOHH_21555 0.52 -0.9 4,236,244 - wrbA NOLOHH_21555 0.52 -0.0 4,236,302 + wrbA NOLOHH_21555 0.62 +0.7 4,236,343 + wrbA NOLOHH_21555 0.69 +0.7 4,236,343 + wrbA NOLOHH_21555 0.69 -1.3 4,236,474 - -0.3 4,236,495 + -0.2 4,236,496 - -2.5 4,236,546 + +0.7 4,236,702 + yccJ NOLOHH_21560 0.66 -0.3 4,236,718 + yccJ NOLOHH_21560 0.73 +1.5 4,236,818 - +3.5 4,236,952 - agp NOLOHH_21565 0.11 +0.3 4,236,952 - agp NOLOHH_21565 0.11 +1.7 4,236,977 - agp NOLOHH_21565 0.13 +0.4 4,236,977 - agp NOLOHH_21565 0.13 +1.1 4,237,143 - agp NOLOHH_21565 0.26 +0.5 4,237,189 + agp NOLOHH_21565 0.30 -0.3 4,237,190 - agp NOLOHH_21565 0.30 -0.5 4,237,190 - agp NOLOHH_21565 0.30 -2.7 4,237,340 - agp NOLOHH_21565 0.42 -1.1 4,237,362 + agp NOLOHH_21565 0.44 -1.1 4,237,363 - agp NOLOHH_21565 0.44 -0.5 4,237,414 + agp NOLOHH_21565 0.48 +0.7 4,237,415 - agp NOLOHH_21565 0.48 +0.0 4,237,415 - agp NOLOHH_21565 0.48 -0.0 4,237,415 - agp NOLOHH_21565 0.48 -0.3 4,237,490 - agp NOLOHH_21565 0.54 -1.6 4,237,517 - agp NOLOHH_21565 0.56 +0.5 4,237,517 - agp NOLOHH_21565 0.56 +0.7 4,237,658 + agp NOLOHH_21565 0.68 +2.3 4,237,735 + agp NOLOHH_21565 0.74 -1.3 4,237,735 + agp NOLOHH_21565 0.74 -0.3 4,237,805 - agp NOLOHH_21565 0.80 +2.3 4,237,805 - agp NOLOHH_21565 0.80 +0.1 4,237,805 - agp NOLOHH_21565 0.80 -1.3 4,237,805 - agp NOLOHH_21565 0.80 -0.1 4,237,817 - agp NOLOHH_21565 0.81 -0.3 4,237,890 - agp NOLOHH_21565 0.86 +0.7 4,237,932 + agp NOLOHH_21565 0.90 -1.1 4,237,933 - +0.1 4,238,161 - +0.7 4,238,165 - +0.1 4,238,165 - -1.6 4,238,165 - +0.7 4,238,165 - +0.7 4,238,165 - +0.8 4,238,199 + -0.3 4,238,200 - -1.3 4,238,369 - +0.7
Or see this region's nucleotide sequence