Strain Fitness in Escherichia coli ECOR27 around NOLOHH_18885

Experiment: TP12

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntydeQ and ydeP are separated by 333 nucleotidesydeP and safA are separated by 247 nucleotidessafA and ydeO are separated by 74 nucleotides NOLOHH_18880: ydeQ - Uncharacterized fimbrial-like protein YdeQ, at 3,700,607 to 3,701,521 ydeQ NOLOHH_18885: ydeP - acid resistance putative oxidoreductase YdeP, at 3,701,855 to 3,704,134 ydeP NOLOHH_18890: safA - two-component system connector SafA, at 3,704,382 to 3,704,579 safA NOLOHH_18895: ydeO - acid stress response transcriptional regulator YdeO, at 3,704,654 to 3,705,415 ydeO Position (kb) 3701 3702 3703 3704 3705Strain fitness (log2 ratio) -2 -1 0 1at 3702.142 kb on + strand, within ydePat 3703.207 kb on - strand, within ydePat 3703.363 kb on + strand, within ydePat 3703.367 kb on + strand, within ydePat 3703.635 kb on - strand, within ydePat 3704.056 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction TP12
remove
3,702,142 + ydeP NOLOHH_18885 0.13 +0.1
3,703,207 - ydeP NOLOHH_18885 0.59 -1.4
3,703,363 + ydeP NOLOHH_18885 0.66 +0.1
3,703,367 + ydeP NOLOHH_18885 0.66 -0.9
3,703,635 - ydeP NOLOHH_18885 0.78 -1.9
3,704,056 - +0.6

Or see this region's nucleotide sequence