Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mdtO and mdtP overlap by 4 nucleotides mdtP and fdhF are separated by 197 nucleotides
NOLOHH_05015: mdtO - multidrug efflux transporter permease subunit MdtO, at 916,041 to 918,092
mdtO
NOLOHH_05020: mdtP - multidrug efflux transporter outer membrane subunit MdtP, at 918,089 to 919,555
mdtP
NOLOHH_05025: fdhF - formate dehydrogenase subunit alpha, at 919,753 to 921,900
fdhF
Position (kb) 918
919
920 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 917.089 kb on - strand, within mdtO at 917.089 kb on - strand, within mdtO at 917.089 kb on - strand, within mdtO at 917.089 kb on - strand, within mdtO at 917.089 kb on - strand, within mdtO at 917.089 kb on - strand, within mdtO at 917.089 kb on - strand, within mdtO at 917.090 kb on + strand, within mdtO at 917.090 kb on + strand, within mdtO at 917.091 kb on - strand, within mdtO at 917.091 kb on - strand, within mdtO at 917.134 kb on - strand, within mdtO at 917.177 kb on + strand, within mdtO at 917.178 kb on - strand, within mdtO at 917.178 kb on - strand, within mdtO at 917.178 kb on - strand, within mdtO at 917.178 kb on - strand, within mdtO at 917.281 kb on + strand, within mdtO at 917.290 kb on + strand, within mdtO at 917.315 kb on + strand, within mdtO at 917.315 kb on + strand, within mdtO at 917.316 kb on - strand, within mdtO at 917.394 kb on + strand, within mdtO at 917.394 kb on + strand, within mdtO at 917.394 kb on + strand, within mdtO at 917.394 kb on + strand, within mdtO at 917.394 kb on + strand, within mdtO at 917.394 kb on + strand, within mdtO at 917.394 kb on + strand, within mdtO at 917.394 kb on + strand, within mdtO at 917.395 kb on - strand, within mdtO at 917.395 kb on - strand, within mdtO at 917.395 kb on - strand, within mdtO at 917.395 kb on - strand, within mdtO at 917.395 kb on - strand, within mdtO at 917.395 kb on - strand, within mdtO at 917.395 kb on - strand, within mdtO at 917.460 kb on + strand, within mdtO at 917.460 kb on + strand, within mdtO at 917.460 kb on + strand, within mdtO at 917.461 kb on - strand, within mdtO at 917.496 kb on - strand, within mdtO at 917.529 kb on + strand, within mdtO at 917.529 kb on + strand, within mdtO at 917.529 kb on + strand, within mdtO at 917.529 kb on + strand, within mdtO at 917.530 kb on - strand, within mdtO at 917.530 kb on - strand, within mdtO at 917.530 kb on - strand, within mdtO at 917.530 kb on - strand, within mdtO at 917.594 kb on + strand, within mdtO at 917.595 kb on - strand, within mdtO at 917.599 kb on + strand, within mdtO at 917.599 kb on + strand, within mdtO at 917.599 kb on + strand, within mdtO at 917.599 kb on + strand, within mdtO at 917.599 kb on + strand, within mdtO at 917.599 kb on + strand, within mdtO at 917.600 kb on - strand, within mdtO at 917.600 kb on - strand, within mdtO at 917.600 kb on - strand, within mdtO at 917.600 kb on - strand, within mdtO at 917.603 kb on + strand, within mdtO at 917.604 kb on - strand, within mdtO at 917.608 kb on + strand, within mdtO at 917.609 kb on - strand, within mdtO at 917.609 kb on - strand, within mdtO at 917.652 kb on + strand, within mdtO at 917.653 kb on - strand, within mdtO at 917.653 kb on - strand, within mdtO at 917.653 kb on - strand, within mdtO at 917.653 kb on - strand, within mdtO at 917.653 kb on - strand, within mdtO at 917.755 kb on + strand, within mdtO at 917.756 kb on - strand, within mdtO at 917.854 kb on + strand, within mdtO at 917.898 kb on + strand at 917.898 kb on + strand at 917.898 kb on + strand at 917.898 kb on + strand at 917.899 kb on - strand at 917.899 kb on - strand at 917.941 kb on + strand at 917.941 kb on + strand at 917.942 kb on - strand at 917.986 kb on + strand at 917.989 kb on + strand at 918.168 kb on + strand at 918.168 kb on + strand at 918.168 kb on + strand at 918.168 kb on + strand at 918.168 kb on + strand at 918.168 kb on + strand at 918.169 kb on - strand at 918.172 kb on + strand at 918.230 kb on - strand at 918.318 kb on + strand, within mdtP at 918.318 kb on + strand, within mdtP at 918.387 kb on + strand, within mdtP at 918.387 kb on + strand, within mdtP at 918.388 kb on - strand, within mdtP at 918.405 kb on + strand, within mdtP at 918.405 kb on + strand, within mdtP at 918.406 kb on - strand, within mdtP at 918.406 kb on - strand, within mdtP at 918.406 kb on - strand, within mdtP at 918.462 kb on + strand, within mdtP at 918.462 kb on + strand, within mdtP at 918.470 kb on + strand, within mdtP at 918.471 kb on - strand, within mdtP at 918.509 kb on + strand, within mdtP at 918.512 kb on + strand, within mdtP at 918.512 kb on + strand, within mdtP at 918.513 kb on - strand, within mdtP at 918.515 kb on - strand, within mdtP at 918.515 kb on - strand, within mdtP at 918.528 kb on + strand, within mdtP at 918.528 kb on + strand, within mdtP at 918.528 kb on + strand, within mdtP at 918.528 kb on + strand, within mdtP at 918.634 kb on - strand, within mdtP at 918.634 kb on - strand, within mdtP at 918.669 kb on - strand, within mdtP at 918.671 kb on + strand, within mdtP at 918.671 kb on + strand, within mdtP at 918.671 kb on + strand, within mdtP at 918.671 kb on + strand, within mdtP at 918.672 kb on - strand, within mdtP at 918.676 kb on + strand, within mdtP at 918.676 kb on + strand, within mdtP at 918.689 kb on + strand, within mdtP at 918.690 kb on - strand, within mdtP at 918.690 kb on - strand, within mdtP at 918.708 kb on + strand, within mdtP at 918.709 kb on - strand, within mdtP at 918.757 kb on + strand, within mdtP at 918.972 kb on - strand, within mdtP at 918.972 kb on - strand, within mdtP at 919.016 kb on + strand, within mdtP at 919.016 kb on + strand, within mdtP at 919.032 kb on + strand, within mdtP at 919.033 kb on - strand, within mdtP at 919.033 kb on - strand, within mdtP at 919.122 kb on + strand, within mdtP at 919.122 kb on + strand, within mdtP at 919.123 kb on - strand, within mdtP at 919.247 kb on + strand, within mdtP at 919.411 kb on - strand at 919.459 kb on - strand at 919.459 kb on - strand at 919.644 kb on - strand at 919.647 kb on + strand at 919.647 kb on + strand at 919.647 kb on + strand at 919.647 kb on + strand at 919.648 kb on - strand at 919.648 kb on - strand at 919.648 kb on - strand at 919.657 kb on - strand at 919.702 kb on + strand at 919.780 kb on + strand at 919.888 kb on + strand at 919.888 kb on + strand at 919.892 kb on - strand at 919.892 kb on - strand at 919.892 kb on - strand at 919.892 kb on - strand at 919.908 kb on + strand at 920.008 kb on + strand, within fdhF at 920.008 kb on + strand, within fdhF at 920.008 kb on + strand, within fdhF at 920.009 kb on - strand, within fdhF at 920.044 kb on + strand, within fdhF at 920.044 kb on + strand, within fdhF at 920.045 kb on - strand, within fdhF at 920.045 kb on - strand, within fdhF at 920.045 kb on - strand, within fdhF at 920.045 kb on - strand, within fdhF at 920.104 kb on + strand, within fdhF at 920.104 kb on + strand, within fdhF at 920.104 kb on + strand, within fdhF at 920.104 kb on + strand, within fdhF at 920.105 kb on - strand, within fdhF at 920.105 kb on - strand, within fdhF at 920.105 kb on - strand, within fdhF at 920.105 kb on - strand, within fdhF at 920.105 kb on - strand, within fdhF at 920.105 kb on - strand, within fdhF at 920.105 kb on - strand, within fdhF at 920.109 kb on - strand, within fdhF at 920.109 kb on - strand, within fdhF at 920.109 kb on - strand, within fdhF at 920.140 kb on - strand, within fdhF at 920.233 kb on - strand, within fdhF at 920.233 kb on - strand, within fdhF at 920.233 kb on - strand, within fdhF at 920.233 kb on - strand, within fdhF at 920.233 kb on - strand, within fdhF at 920.233 kb on - strand, within fdhF at 920.248 kb on - strand, within fdhF at 920.248 kb on - strand, within fdhF at 920.259 kb on - strand, within fdhF at 920.259 kb on - strand, within fdhF at 920.315 kb on + strand, within fdhF at 920.315 kb on + strand, within fdhF at 920.316 kb on - strand, within fdhF at 920.316 kb on - strand, within fdhF at 920.316 kb on - strand, within fdhF at 920.316 kb on - strand, within fdhF at 920.319 kb on + strand, within fdhF at 920.320 kb on - strand, within fdhF at 920.325 kb on + strand, within fdhF at 920.331 kb on + strand, within fdhF at 920.331 kb on + strand, within fdhF at 920.520 kb on + strand, within fdhF at 920.521 kb on - strand, within fdhF at 920.521 kb on - strand, within fdhF
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 917,089 - mdtO NOLOHH_05015 0.51 -1.1 917,089 - mdtO NOLOHH_05015 0.51 -2.6 917,089 - mdtO NOLOHH_05015 0.51 +0.1 917,089 - mdtO NOLOHH_05015 0.51 +1.1 917,089 - mdtO NOLOHH_05015 0.51 +0.7 917,089 - mdtO NOLOHH_05015 0.51 +0.1 917,089 - mdtO NOLOHH_05015 0.51 +0.9 917,090 + mdtO NOLOHH_05015 0.51 -0.2 917,090 + mdtO NOLOHH_05015 0.51 +0.1 917,091 - mdtO NOLOHH_05015 0.51 +0.5 917,091 - mdtO NOLOHH_05015 0.51 +0.1 917,134 - mdtO NOLOHH_05015 0.53 +0.3 917,177 + mdtO NOLOHH_05015 0.55 +1.2 917,178 - mdtO NOLOHH_05015 0.55 +0.1 917,178 - mdtO NOLOHH_05015 0.55 -0.2 917,178 - mdtO NOLOHH_05015 0.55 -0.1 917,178 - mdtO NOLOHH_05015 0.55 -1.3 917,281 + mdtO NOLOHH_05015 0.60 +1.1 917,290 + mdtO NOLOHH_05015 0.61 -0.4 917,315 + mdtO NOLOHH_05015 0.62 +0.9 917,315 + mdtO NOLOHH_05015 0.62 -2.1 917,316 - mdtO NOLOHH_05015 0.62 +0.7 917,394 + mdtO NOLOHH_05015 0.66 -0.1 917,394 + mdtO NOLOHH_05015 0.66 -0.3 917,394 + mdtO NOLOHH_05015 0.66 -0.1 917,394 + mdtO NOLOHH_05015 0.66 +0.3 917,394 + mdtO NOLOHH_05015 0.66 -2.1 917,394 + mdtO NOLOHH_05015 0.66 -0.8 917,394 + mdtO NOLOHH_05015 0.66 +0.1 917,394 + mdtO NOLOHH_05015 0.66 -0.6 917,395 - mdtO NOLOHH_05015 0.66 +1.5 917,395 - mdtO NOLOHH_05015 0.66 -0.9 917,395 - mdtO NOLOHH_05015 0.66 +1.0 917,395 - mdtO NOLOHH_05015 0.66 +0.8 917,395 - mdtO NOLOHH_05015 0.66 +0.6 917,395 - mdtO NOLOHH_05015 0.66 -1.9 917,395 - mdtO NOLOHH_05015 0.66 +0.1 917,460 + mdtO NOLOHH_05015 0.69 -0.1 917,460 + mdtO NOLOHH_05015 0.69 -0.1 917,460 + mdtO NOLOHH_05015 0.69 -0.1 917,461 - mdtO NOLOHH_05015 0.69 +1.2 917,496 - mdtO NOLOHH_05015 0.71 +1.7 917,529 + mdtO NOLOHH_05015 0.73 +0.2 917,529 + mdtO NOLOHH_05015 0.73 -1.0 917,529 + mdtO NOLOHH_05015 0.73 -0.7 917,529 + mdtO NOLOHH_05015 0.73 +0.2 917,530 - mdtO NOLOHH_05015 0.73 +0.3 917,530 - mdtO NOLOHH_05015 0.73 +1.9 917,530 - mdtO NOLOHH_05015 0.73 +0.3 917,530 - mdtO NOLOHH_05015 0.73 +1.9 917,594 + mdtO NOLOHH_05015 0.76 +0.9 917,595 - mdtO NOLOHH_05015 0.76 -1.4 917,599 + mdtO NOLOHH_05015 0.76 -0.6 917,599 + mdtO NOLOHH_05015 0.76 -0.3 917,599 + mdtO NOLOHH_05015 0.76 -0.3 917,599 + mdtO NOLOHH_05015 0.76 +0.5 917,599 + mdtO NOLOHH_05015 0.76 +1.8 917,599 + mdtO NOLOHH_05015 0.76 -1.4 917,600 - mdtO NOLOHH_05015 0.76 +0.6 917,600 - mdtO NOLOHH_05015 0.76 -0.1 917,600 - mdtO NOLOHH_05015 0.76 -0.1 917,600 - mdtO NOLOHH_05015 0.76 -0.4 917,603 + mdtO NOLOHH_05015 0.76 +1.0 917,604 - mdtO NOLOHH_05015 0.76 +0.7 917,608 + mdtO NOLOHH_05015 0.76 +0.2 917,609 - mdtO NOLOHH_05015 0.76 +0.1 917,609 - mdtO NOLOHH_05015 0.76 +0.8 917,652 + mdtO NOLOHH_05015 0.79 +3.2 917,653 - mdtO NOLOHH_05015 0.79 +0.5 917,653 - mdtO NOLOHH_05015 0.79 -0.2 917,653 - mdtO NOLOHH_05015 0.79 +0.5 917,653 - mdtO NOLOHH_05015 0.79 -0.6 917,653 - mdtO NOLOHH_05015 0.79 -1.7 917,755 + mdtO NOLOHH_05015 0.84 -0.1 917,756 - mdtO NOLOHH_05015 0.84 +0.2 917,854 + mdtO NOLOHH_05015 0.88 +0.7 917,898 + +1.0 917,898 + +0.5 917,898 + +1.2 917,898 + +0.1 917,899 - -1.4 917,899 - +0.0 917,941 + -0.2 917,941 + +0.1 917,942 - -0.7 917,986 + -0.2 917,989 + +0.5 918,168 + +1.8 918,168 + -0.0 918,168 + -0.4 918,168 + +0.5 918,168 + +0.6 918,168 + +1.9 918,169 - +0.9 918,172 + +1.5 918,230 - +0.1 918,318 + mdtP NOLOHH_05020 0.16 -1.1 918,318 + mdtP NOLOHH_05020 0.16 +0.5 918,387 + mdtP NOLOHH_05020 0.20 -0.1 918,387 + mdtP NOLOHH_05020 0.20 +0.9 918,388 - mdtP NOLOHH_05020 0.20 -0.9 918,405 + mdtP NOLOHH_05020 0.22 -0.0 918,405 + mdtP NOLOHH_05020 0.22 +0.7 918,406 - mdtP NOLOHH_05020 0.22 -0.1 918,406 - mdtP NOLOHH_05020 0.22 -1.0 918,406 - mdtP NOLOHH_05020 0.22 -0.1 918,462 + mdtP NOLOHH_05020 0.25 -0.7 918,462 + mdtP NOLOHH_05020 0.25 -2.1 918,470 + mdtP NOLOHH_05020 0.26 +1.7 918,471 - mdtP NOLOHH_05020 0.26 -1.1 918,509 + mdtP NOLOHH_05020 0.29 -0.4 918,512 + mdtP NOLOHH_05020 0.29 +0.3 918,512 + mdtP NOLOHH_05020 0.29 -0.3 918,513 - mdtP NOLOHH_05020 0.29 +0.1 918,515 - mdtP NOLOHH_05020 0.29 -0.9 918,515 - mdtP NOLOHH_05020 0.29 -0.5 918,528 + mdtP NOLOHH_05020 0.30 -0.5 918,528 + mdtP NOLOHH_05020 0.30 -0.9 918,528 + mdtP NOLOHH_05020 0.30 -0.7 918,528 + mdtP NOLOHH_05020 0.30 +0.5 918,634 - mdtP NOLOHH_05020 0.37 -0.4 918,634 - mdtP NOLOHH_05020 0.37 -0.8 918,669 - mdtP NOLOHH_05020 0.40 -0.1 918,671 + mdtP NOLOHH_05020 0.40 +0.2 918,671 + mdtP NOLOHH_05020 0.40 +0.1 918,671 + mdtP NOLOHH_05020 0.40 -0.7 918,671 + mdtP NOLOHH_05020 0.40 -0.1 918,672 - mdtP NOLOHH_05020 0.40 -0.5 918,676 + mdtP NOLOHH_05020 0.40 +0.3 918,676 + mdtP NOLOHH_05020 0.40 -1.9 918,689 + mdtP NOLOHH_05020 0.41 -0.5 918,690 - mdtP NOLOHH_05020 0.41 -1.7 918,690 - mdtP NOLOHH_05020 0.41 -0.4 918,708 + mdtP NOLOHH_05020 0.42 -0.2 918,709 - mdtP NOLOHH_05020 0.42 -0.1 918,757 + mdtP NOLOHH_05020 0.46 -0.0 918,972 - mdtP NOLOHH_05020 0.60 -0.6 918,972 - mdtP NOLOHH_05020 0.60 -0.7 919,016 + mdtP NOLOHH_05020 0.63 +0.1 919,016 + mdtP NOLOHH_05020 0.63 +0.9 919,032 + mdtP NOLOHH_05020 0.64 +0.2 919,033 - mdtP NOLOHH_05020 0.64 -0.1 919,033 - mdtP NOLOHH_05020 0.64 +0.6 919,122 + mdtP NOLOHH_05020 0.70 +1.3 919,122 + mdtP NOLOHH_05020 0.70 +0.3 919,123 - mdtP NOLOHH_05020 0.70 -0.4 919,247 + mdtP NOLOHH_05020 0.79 +0.1 919,411 - +2.9 919,459 - -0.5 919,459 - -2.6 919,644 - -0.4 919,647 + +0.3 919,647 + -0.6 919,647 + +0.3 919,647 + -1.5 919,648 - -0.7 919,648 - +0.9 919,648 - +0.2 919,657 - -1.1 919,702 + -0.3 919,780 + -1.7 919,888 + +0.0 919,888 + -0.2 919,892 - -1.4 919,892 - +0.3 919,892 - -0.7 919,892 - -0.6 919,908 + +0.7 920,008 + fdhF NOLOHH_05025 0.12 +2.9 920,008 + fdhF NOLOHH_05025 0.12 +0.1 920,008 + fdhF NOLOHH_05025 0.12 +0.0 920,009 - fdhF NOLOHH_05025 0.12 -1.1 920,044 + fdhF NOLOHH_05025 0.14 -2.1 920,044 + fdhF NOLOHH_05025 0.14 +0.5 920,045 - fdhF NOLOHH_05025 0.14 -1.1 920,045 - fdhF NOLOHH_05025 0.14 +0.2 920,045 - fdhF NOLOHH_05025 0.14 +0.2 920,045 - fdhF NOLOHH_05025 0.14 -0.3 920,104 + fdhF NOLOHH_05025 0.16 +0.0 920,104 + fdhF NOLOHH_05025 0.16 -0.6 920,104 + fdhF NOLOHH_05025 0.16 -0.2 920,104 + fdhF NOLOHH_05025 0.16 -0.7 920,105 - fdhF NOLOHH_05025 0.16 +1.5 920,105 - fdhF NOLOHH_05025 0.16 -1.9 920,105 - fdhF NOLOHH_05025 0.16 +0.9 920,105 - fdhF NOLOHH_05025 0.16 +0.4 920,105 - fdhF NOLOHH_05025 0.16 -0.6 920,105 - fdhF NOLOHH_05025 0.16 +0.2 920,105 - fdhF NOLOHH_05025 0.16 -0.8 920,109 - fdhF NOLOHH_05025 0.17 +0.3 920,109 - fdhF NOLOHH_05025 0.17 -0.2 920,109 - fdhF NOLOHH_05025 0.17 -1.0 920,140 - fdhF NOLOHH_05025 0.18 -1.3 920,233 - fdhF NOLOHH_05025 0.22 +0.3 920,233 - fdhF NOLOHH_05025 0.22 +0.1 920,233 - fdhF NOLOHH_05025 0.22 +0.9 920,233 - fdhF NOLOHH_05025 0.22 +0.1 920,233 - fdhF NOLOHH_05025 0.22 -0.4 920,233 - fdhF NOLOHH_05025 0.22 +0.2 920,248 - fdhF NOLOHH_05025 0.23 -0.8 920,248 - fdhF NOLOHH_05025 0.23 -2.9 920,259 - fdhF NOLOHH_05025 0.24 +0.5 920,259 - fdhF NOLOHH_05025 0.24 -0.1 920,315 + fdhF NOLOHH_05025 0.26 -0.3 920,315 + fdhF NOLOHH_05025 0.26 +0.8 920,316 - fdhF NOLOHH_05025 0.26 -0.3 920,316 - fdhF NOLOHH_05025 0.26 +0.3 920,316 - fdhF NOLOHH_05025 0.26 -1.2 920,316 - fdhF NOLOHH_05025 0.26 +0.9 920,319 + fdhF NOLOHH_05025 0.26 +0.4 920,320 - fdhF NOLOHH_05025 0.26 +0.3 920,325 + fdhF NOLOHH_05025 0.27 +0.3 920,331 + fdhF NOLOHH_05025 0.27 -0.4 920,331 + fdhF NOLOHH_05025 0.27 -0.1 920,520 + fdhF NOLOHH_05025 0.36 -0.2 920,521 - fdhF NOLOHH_05025 0.36 -0.7 920,521 - fdhF NOLOHH_05025 0.36 -2.9
Or see this region's nucleotide sequence