Experiment: TP12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt kefC and kefF overlap by 8 nucleotides kefF and yaaU are separated by 107 nucleotides yaaU and fixX are separated by 58 nucleotides fixX and fixX overlap by 4 nucleotides
NOLOHH_03200: kefC - glutathione-regulated potassium-efflux system protein KefC, at 558,092 to 559,954
kefC
NOLOHH_03205: kefF - glutathione-regulated potassium-efflux system oxidoreductase KefF, at 559,947 to 560,477
kefF
NOLOHH_03210: yaaU - Putative metabolite transport protein YaaU, at 560,585 to 561,916
yaaU
NOLOHH_03215: fixX - ferredoxin-like protein FixX, at 561,975 to 562,262
fixX
NOLOHH_03220: fixX - ferredoxin-like protein FixX, at 562,259 to 563,545
fixX
Position (kb) 560
561
562 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 559.635 kb on - strand, within kefC at 559.635 kb on - strand, within kefC at 559.635 kb on - strand, within kefC at 559.635 kb on - strand, within kefC at 559.719 kb on - strand, within kefC at 559.750 kb on + strand, within kefC at 559.751 kb on - strand, within kefC at 559.751 kb on - strand, within kefC at 559.834 kb on + strand at 559.920 kb on + strand at 559.920 kb on + strand at 559.921 kb on - strand at 559.949 kb on - strand at 559.988 kb on + strand at 559.988 kb on + strand at 559.988 kb on + strand at 559.989 kb on - strand at 559.989 kb on - strand at 559.989 kb on - strand at 559.989 kb on - strand at 559.990 kb on + strand at 559.990 kb on + strand at 559.991 kb on - strand at 559.991 kb on - strand at 560.030 kb on + strand, within kefF at 560.030 kb on + strand, within kefF at 560.030 kb on + strand, within kefF at 560.077 kb on + strand, within kefF at 560.077 kb on + strand, within kefF at 560.078 kb on - strand, within kefF at 560.215 kb on + strand, within kefF at 560.461 kb on + strand at 560.462 kb on - strand at 560.466 kb on + strand at 560.467 kb on - strand at 560.468 kb on + strand at 560.468 kb on + strand at 560.469 kb on - strand at 560.477 kb on + strand at 560.477 kb on + strand at 560.478 kb on - strand at 560.478 kb on - strand at 560.478 kb on - strand at 560.519 kb on + strand at 560.519 kb on + strand at 560.520 kb on - strand at 560.527 kb on + strand at 560.528 kb on - strand at 560.528 kb on - strand at 560.540 kb on + strand at 560.542 kb on + strand at 560.542 kb on + strand at 560.543 kb on - strand at 560.543 kb on - strand at 560.550 kb on - strand at 560.550 kb on - strand at 560.552 kb on + strand at 560.553 kb on - strand at 560.553 kb on - strand at 560.614 kb on + strand at 560.614 kb on + strand at 560.615 kb on - strand at 560.706 kb on - strand at 560.717 kb on - strand at 560.728 kb on - strand, within yaaU at 560.791 kb on + strand, within yaaU at 560.791 kb on + strand, within yaaU at 560.792 kb on - strand, within yaaU at 560.792 kb on - strand, within yaaU at 560.818 kb on + strand, within yaaU at 560.887 kb on - strand, within yaaU at 560.887 kb on - strand, within yaaU at 561.029 kb on - strand, within yaaU at 561.040 kb on + strand, within yaaU at 561.041 kb on - strand, within yaaU at 561.129 kb on + strand, within yaaU at 561.129 kb on + strand, within yaaU at 561.129 kb on + strand, within yaaU at 561.130 kb on - strand, within yaaU at 561.206 kb on - strand, within yaaU at 561.318 kb on - strand, within yaaU at 561.420 kb on + strand, within yaaU at 561.421 kb on - strand, within yaaU at 561.462 kb on + strand, within yaaU at 561.462 kb on + strand, within yaaU at 561.463 kb on - strand, within yaaU at 561.463 kb on - strand, within yaaU at 561.463 kb on - strand, within yaaU at 561.463 kb on - strand, within yaaU at 561.463 kb on - strand, within yaaU at 561.571 kb on + strand, within yaaU at 561.575 kb on + strand, within yaaU at 561.691 kb on + strand, within yaaU at 561.692 kb on - strand, within yaaU at 561.693 kb on + strand, within yaaU at 561.818 kb on + strand at 561.818 kb on + strand at 561.818 kb on + strand at 561.819 kb on - strand at 561.819 kb on - strand at 561.819 kb on - strand at 561.819 kb on - strand at 561.819 kb on - strand at 561.822 kb on + strand at 561.822 kb on + strand at 561.823 kb on - strand at 561.823 kb on - strand at 561.823 kb on - strand at 561.823 kb on - strand at 561.922 kb on - strand at 561.959 kb on - strand at 561.962 kb on + strand at 561.962 kb on + strand at 561.962 kb on + strand at 561.962 kb on + strand at 562.120 kb on + strand, within fixX at 562.120 kb on + strand, within fixX at 562.120 kb on + strand, within fixX at 562.121 kb on - strand, within fixX at 562.458 kb on + strand, within fixX at 562.458 kb on + strand, within fixX at 562.462 kb on + strand, within fixX at 562.462 kb on + strand, within fixX at 562.462 kb on + strand, within fixX at 562.462 kb on + strand, within fixX at 562.462 kb on + strand, within fixX at 562.462 kb on + strand, within fixX at 562.462 kb on + strand, within fixX at 562.463 kb on - strand, within fixX at 562.463 kb on - strand, within fixX at 562.463 kb on - strand, within fixX at 562.463 kb on - strand, within fixX at 562.463 kb on - strand, within fixX at 562.463 kb on - strand, within fixX at 562.463 kb on - strand, within fixX at 562.463 kb on - strand, within fixX at 562.463 kb on - strand, within fixX at 562.463 kb on - strand, within fixX at 562.463 kb on - strand, within fixX at 562.463 kb on - strand, within fixX at 562.463 kb on - strand, within fixX at 562.610 kb on - strand, within fixX at 562.625 kb on - strand, within fixX at 562.625 kb on - strand, within fixX at 562.625 kb on - strand, within fixX at 562.655 kb on + strand, within fixX at 562.655 kb on + strand, within fixX at 562.719 kb on + strand, within fixX at 562.720 kb on - strand, within fixX at 562.853 kb on - strand, within fixX at 562.864 kb on + strand, within fixX at 562.864 kb on + strand, within fixX at 562.864 kb on + strand, within fixX at 562.865 kb on - strand, within fixX at 562.865 kb on - strand, within fixX at 562.866 kb on + strand, within fixX at 562.866 kb on + strand, within fixX at 562.867 kb on - strand, within fixX
Per-strain Table
Position Strand Gene LocusTag Fraction TP12 remove 559,635 - kefC NOLOHH_03200 0.83 -0.6 559,635 - kefC NOLOHH_03200 0.83 -2.8 559,635 - kefC NOLOHH_03200 0.83 -1.6 559,635 - kefC NOLOHH_03200 0.83 -1.5 559,719 - kefC NOLOHH_03200 0.87 -0.7 559,750 + kefC NOLOHH_03200 0.89 -0.4 559,751 - kefC NOLOHH_03200 0.89 -1.1 559,751 - kefC NOLOHH_03200 0.89 -1.7 559,834 + +0.1 559,920 + +0.3 559,920 + -0.3 559,921 - -0.7 559,949 - -0.6 559,988 + -0.7 559,988 + +0.4 559,988 + +0.3 559,989 - +0.5 559,989 - -0.3 559,989 - +0.9 559,989 - +0.5 559,990 + +0.1 559,990 + +0.5 559,991 - +3.2 559,991 - -1.5 560,030 + kefF NOLOHH_03205 0.16 -0.5 560,030 + kefF NOLOHH_03205 0.16 -0.4 560,030 + kefF NOLOHH_03205 0.16 -0.7 560,077 + kefF NOLOHH_03205 0.24 -0.5 560,077 + kefF NOLOHH_03205 0.24 -1.1 560,078 - kefF NOLOHH_03205 0.25 +0.9 560,215 + kefF NOLOHH_03205 0.50 +0.0 560,461 + +0.6 560,462 - +0.6 560,466 + +0.9 560,467 - -1.1 560,468 + -1.0 560,468 + +2.5 560,469 - -1.5 560,477 + -0.1 560,477 + -0.1 560,478 - +0.1 560,478 - -0.5 560,478 - -1.0 560,519 + -0.9 560,519 + +0.1 560,520 - +0.0 560,527 + -0.5 560,528 - -0.3 560,528 - -0.6 560,540 + -1.1 560,542 + -0.9 560,542 + +1.9 560,543 - +0.1 560,543 - +1.1 560,550 - -0.0 560,550 - +1.1 560,552 + +0.9 560,553 - +0.9 560,553 - -0.6 560,614 + +2.5 560,614 + -0.1 560,615 - -0.3 560,706 - -1.3 560,717 - +1.6 560,728 - yaaU NOLOHH_03210 0.11 -0.5 560,791 + yaaU NOLOHH_03210 0.15 +1.6 560,791 + yaaU NOLOHH_03210 0.15 +0.6 560,792 - yaaU NOLOHH_03210 0.16 -0.1 560,792 - yaaU NOLOHH_03210 0.16 -2.3 560,818 + yaaU NOLOHH_03210 0.17 +0.1 560,887 - yaaU NOLOHH_03210 0.23 -1.0 560,887 - yaaU NOLOHH_03210 0.23 -0.0 561,029 - yaaU NOLOHH_03210 0.33 +0.9 561,040 + yaaU NOLOHH_03210 0.34 +1.4 561,041 - yaaU NOLOHH_03210 0.34 -0.1 561,129 + yaaU NOLOHH_03210 0.41 -0.9 561,129 + yaaU NOLOHH_03210 0.41 -0.1 561,129 + yaaU NOLOHH_03210 0.41 -1.9 561,130 - yaaU NOLOHH_03210 0.41 +0.3 561,206 - yaaU NOLOHH_03210 0.47 +0.2 561,318 - yaaU NOLOHH_03210 0.55 +0.6 561,420 + yaaU NOLOHH_03210 0.63 +0.7 561,421 - yaaU NOLOHH_03210 0.63 +0.0 561,462 + yaaU NOLOHH_03210 0.66 +0.9 561,462 + yaaU NOLOHH_03210 0.66 +0.4 561,463 - yaaU NOLOHH_03210 0.66 -0.5 561,463 - yaaU NOLOHH_03210 0.66 +0.9 561,463 - yaaU NOLOHH_03210 0.66 +0.9 561,463 - yaaU NOLOHH_03210 0.66 +0.9 561,463 - yaaU NOLOHH_03210 0.66 -0.6 561,571 + yaaU NOLOHH_03210 0.74 -0.1 561,575 + yaaU NOLOHH_03210 0.74 -2.1 561,691 + yaaU NOLOHH_03210 0.83 +0.9 561,692 - yaaU NOLOHH_03210 0.83 -0.1 561,693 + yaaU NOLOHH_03210 0.83 -0.7 561,818 + +0.0 561,818 + -0.1 561,818 + -0.6 561,819 - -0.7 561,819 - +0.7 561,819 - +0.1 561,819 - +0.5 561,819 - -1.7 561,822 + -3.0 561,822 + -0.6 561,823 - +0.9 561,823 - -0.4 561,823 - +0.6 561,823 - -0.2 561,922 - -0.4 561,959 - -0.4 561,962 + -0.1 561,962 + +0.6 561,962 + +0.3 561,962 + +0.9 562,120 + fixX NOLOHH_03215 0.50 +1.0 562,120 + fixX NOLOHH_03215 0.50 -0.7 562,120 + fixX NOLOHH_03215 0.50 -0.1 562,121 - fixX NOLOHH_03215 0.51 -1.2 562,458 + fixX NOLOHH_03220 0.15 -0.6 562,458 + fixX NOLOHH_03220 0.15 -1.4 562,462 + fixX NOLOHH_03220 0.16 -1.2 562,462 + fixX NOLOHH_03220 0.16 -0.1 562,462 + fixX NOLOHH_03220 0.16 +0.3 562,462 + fixX NOLOHH_03220 0.16 -0.7 562,462 + fixX NOLOHH_03220 0.16 -0.3 562,462 + fixX NOLOHH_03220 0.16 +0.9 562,462 + fixX NOLOHH_03220 0.16 +0.5 562,463 - fixX NOLOHH_03220 0.16 -0.7 562,463 - fixX NOLOHH_03220 0.16 -1.9 562,463 - fixX NOLOHH_03220 0.16 +1.6 562,463 - fixX NOLOHH_03220 0.16 -0.9 562,463 - fixX NOLOHH_03220 0.16 +0.3 562,463 - fixX NOLOHH_03220 0.16 +1.7 562,463 - fixX NOLOHH_03220 0.16 -0.5 562,463 - fixX NOLOHH_03220 0.16 +1.7 562,463 - fixX NOLOHH_03220 0.16 +0.9 562,463 - fixX NOLOHH_03220 0.16 -0.1 562,463 - fixX NOLOHH_03220 0.16 -0.3 562,463 - fixX NOLOHH_03220 0.16 +0.7 562,463 - fixX NOLOHH_03220 0.16 +0.5 562,610 - fixX NOLOHH_03220 0.27 -0.1 562,625 - fixX NOLOHH_03220 0.28 +0.4 562,625 - fixX NOLOHH_03220 0.28 +0.5 562,625 - fixX NOLOHH_03220 0.28 -0.1 562,655 + fixX NOLOHH_03220 0.31 -2.3 562,655 + fixX NOLOHH_03220 0.31 -0.1 562,719 + fixX NOLOHH_03220 0.36 +1.5 562,720 - fixX NOLOHH_03220 0.36 -1.5 562,853 - fixX NOLOHH_03220 0.46 +1.5 562,864 + fixX NOLOHH_03220 0.47 -1.5 562,864 + fixX NOLOHH_03220 0.47 +2.5 562,864 + fixX NOLOHH_03220 0.47 -0.5 562,865 - fixX NOLOHH_03220 0.47 +0.5 562,865 - fixX NOLOHH_03220 0.47 +1.2 562,866 + fixX NOLOHH_03220 0.47 +1.9 562,866 + fixX NOLOHH_03220 0.47 -1.7 562,867 - fixX NOLOHH_03220 0.47 +2.5
Or see this region's nucleotide sequence