Experiment: lib only
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_03316 and OHPLBJKB_03317 are separated by 248 nucleotides OHPLBJKB_03317 and OHPLBJKB_03318 are separated by 101 nucleotides
OHPLBJKB_03316: OHPLBJKB_03316 - IS110 family transposase IS621, at 3,459,994 to 3,460,974
_03316
OHPLBJKB_03317: OHPLBJKB_03317 - hypothetical protein, at 3,461,223 to 3,461,762
_03317
OHPLBJKB_03318: OHPLBJKB_03318 - 3-(3-hydroxy-phenyl)propionate transporter, at 3,461,864 to 3,463,075
_03318
Position (kb)
3461
3462 Strain fitness (log2 ratio)
-1
0
1 at 3461.159 kb on + strand at 3461.162 kb on + strand at 3461.162 kb on + strand at 3461.214 kb on + strand at 3461.214 kb on + strand at 3461.214 kb on + strand at 3461.214 kb on + strand at 3461.214 kb on + strand at 3461.215 kb on - strand at 3461.215 kb on - strand at 3461.215 kb on - strand at 3461.215 kb on - strand at 3461.215 kb on - strand at 3461.215 kb on - strand at 3461.215 kb on - strand at 3461.215 kb on - strand at 3461.215 kb on - strand at 3461.215 kb on - strand at 3461.215 kb on - strand at 3461.218 kb on + strand at 3461.218 kb on + strand at 3461.218 kb on + strand at 3461.218 kb on + strand at 3461.218 kb on + strand at 3461.218 kb on + strand at 3461.219 kb on - strand at 3461.219 kb on - strand at 3461.219 kb on - strand at 3461.219 kb on - strand at 3461.224 kb on + strand at 3461.260 kb on + strand at 3461.361 kb on - strand, within OHPLBJKB_03317 at 3461.368 kb on + strand, within OHPLBJKB_03317 at 3461.368 kb on + strand, within OHPLBJKB_03317 at 3461.368 kb on + strand, within OHPLBJKB_03317 at 3461.369 kb on - strand, within OHPLBJKB_03317 at 3461.369 kb on - strand, within OHPLBJKB_03317 at 3461.381 kb on + strand, within OHPLBJKB_03317 at 3461.489 kb on + strand, within OHPLBJKB_03317 at 3461.490 kb on - strand, within OHPLBJKB_03317 at 3461.555 kb on + strand, within OHPLBJKB_03317 at 3461.556 kb on - strand, within OHPLBJKB_03317 at 3461.556 kb on - strand, within OHPLBJKB_03317 at 3461.557 kb on + strand, within OHPLBJKB_03317 at 3461.558 kb on - strand, within OHPLBJKB_03317 at 3461.558 kb on - strand, within OHPLBJKB_03317 at 3461.627 kb on + strand, within OHPLBJKB_03317 at 3461.718 kb on + strand at 3461.718 kb on + strand at 3461.745 kb on + strand at 3461.746 kb on - strand at 3461.751 kb on - strand at 3461.799 kb on + strand at 3461.801 kb on + strand at 3461.801 kb on + strand at 3461.802 kb on - strand at 3461.852 kb on + strand at 3461.853 kb on - strand at 3461.856 kb on - strand at 3461.911 kb on + strand at 3461.981 kb on + strand at 3461.982 kb on - strand at 3462.081 kb on + strand, within OHPLBJKB_03318 at 3462.160 kb on + strand, within OHPLBJKB_03318 at 3462.160 kb on + strand, within OHPLBJKB_03318 at 3462.160 kb on + strand, within OHPLBJKB_03318 at 3462.203 kb on + strand, within OHPLBJKB_03318 at 3462.216 kb on + strand, within OHPLBJKB_03318 at 3462.217 kb on - strand, within OHPLBJKB_03318 at 3462.217 kb on - strand, within OHPLBJKB_03318 at 3462.251 kb on - strand, within OHPLBJKB_03318 at 3462.379 kb on + strand, within OHPLBJKB_03318 at 3462.379 kb on + strand, within OHPLBJKB_03318 at 3462.379 kb on + strand, within OHPLBJKB_03318 at 3462.379 kb on + strand, within OHPLBJKB_03318 at 3462.380 kb on - strand, within OHPLBJKB_03318 at 3462.380 kb on - strand, within OHPLBJKB_03318 at 3462.380 kb on - strand, within OHPLBJKB_03318 at 3462.380 kb on - strand, within OHPLBJKB_03318 at 3462.380 kb on - strand, within OHPLBJKB_03318 at 3462.380 kb on - strand, within OHPLBJKB_03318 at 3462.381 kb on + strand, within OHPLBJKB_03318 at 3462.381 kb on + strand, within OHPLBJKB_03318 at 3462.381 kb on + strand, within OHPLBJKB_03318 at 3462.381 kb on + strand, within OHPLBJKB_03318 at 3462.381 kb on + strand, within OHPLBJKB_03318 at 3462.382 kb on - strand, within OHPLBJKB_03318 at 3462.382 kb on - strand, within OHPLBJKB_03318 at 3462.382 kb on - strand, within OHPLBJKB_03318 at 3462.382 kb on - strand, within OHPLBJKB_03318 at 3462.382 kb on - strand, within OHPLBJKB_03318 at 3462.382 kb on - strand, within OHPLBJKB_03318 at 3462.382 kb on - strand, within OHPLBJKB_03318 at 3462.405 kb on + strand, within OHPLBJKB_03318 at 3462.405 kb on + strand, within OHPLBJKB_03318 at 3462.406 kb on - strand, within OHPLBJKB_03318 at 3462.524 kb on + strand, within OHPLBJKB_03318 at 3462.581 kb on + strand, within OHPLBJKB_03318 at 3462.642 kb on + strand, within OHPLBJKB_03318 at 3462.642 kb on + strand, within OHPLBJKB_03318 at 3462.642 kb on + strand, within OHPLBJKB_03318 at 3462.643 kb on - strand, within OHPLBJKB_03318 at 3462.643 kb on - strand, within OHPLBJKB_03318 at 3462.643 kb on - strand, within OHPLBJKB_03318 at 3462.703 kb on + strand, within OHPLBJKB_03318
Per-strain Table
Position Strand Gene LocusTag Fraction lib only remove 3,461,159 + +1.0 3,461,162 + +0.6 3,461,162 + +1.1 3,461,214 + +0.6 3,461,214 + +0.1 3,461,214 + +0.9 3,461,214 + +0.4 3,461,214 + -1.0 3,461,215 - -0.5 3,461,215 - -0.4 3,461,215 - +0.6 3,461,215 - -1.2 3,461,215 - -0.1 3,461,215 - +1.4 3,461,215 - +0.3 3,461,215 - +0.6 3,461,215 - -0.8 3,461,215 - +0.5 3,461,215 - -0.1 3,461,218 + +0.0 3,461,218 + +1.1 3,461,218 + -0.7 3,461,218 + +0.7 3,461,218 + -0.4 3,461,218 + +0.6 3,461,219 - -0.4 3,461,219 - -0.5 3,461,219 - -0.5 3,461,219 - -0.3 3,461,224 + -0.7 3,461,260 + -0.5 3,461,361 - OHPLBJKB_03317 0.26 +0.9 3,461,368 + OHPLBJKB_03317 0.27 +0.2 3,461,368 + OHPLBJKB_03317 0.27 -0.3 3,461,368 + OHPLBJKB_03317 0.27 +0.6 3,461,369 - OHPLBJKB_03317 0.27 -0.1 3,461,369 - OHPLBJKB_03317 0.27 -0.4 3,461,381 + OHPLBJKB_03317 0.29 -1.1 3,461,489 + OHPLBJKB_03317 0.49 +0.3 3,461,490 - OHPLBJKB_03317 0.49 -1.2 3,461,555 + OHPLBJKB_03317 0.61 -0.1 3,461,556 - OHPLBJKB_03317 0.62 +0.5 3,461,556 - OHPLBJKB_03317 0.62 -0.5 3,461,557 + OHPLBJKB_03317 0.62 -0.6 3,461,558 - OHPLBJKB_03317 0.62 +0.0 3,461,558 - OHPLBJKB_03317 0.62 +0.2 3,461,627 + OHPLBJKB_03317 0.75 -1.7 3,461,718 + +0.5 3,461,718 + -0.5 3,461,745 + -0.0 3,461,746 - -0.2 3,461,751 - +0.9 3,461,799 + +1.2 3,461,801 + +0.1 3,461,801 + +0.1 3,461,802 - +0.1 3,461,852 + -0.3 3,461,853 - +0.5 3,461,856 - -0.1 3,461,911 + +0.7 3,461,981 + +0.9 3,461,982 - +0.6 3,462,081 + OHPLBJKB_03318 0.18 +0.7 3,462,160 + OHPLBJKB_03318 0.24 +0.4 3,462,160 + OHPLBJKB_03318 0.24 +0.0 3,462,160 + OHPLBJKB_03318 0.24 -0.9 3,462,203 + OHPLBJKB_03318 0.28 -0.3 3,462,216 + OHPLBJKB_03318 0.29 -0.9 3,462,217 - OHPLBJKB_03318 0.29 +0.1 3,462,217 - OHPLBJKB_03318 0.29 -0.3 3,462,251 - OHPLBJKB_03318 0.32 +0.0 3,462,379 + OHPLBJKB_03318 0.42 -0.1 3,462,379 + OHPLBJKB_03318 0.42 +0.4 3,462,379 + OHPLBJKB_03318 0.42 -0.5 3,462,379 + OHPLBJKB_03318 0.42 -0.1 3,462,380 - OHPLBJKB_03318 0.43 +0.4 3,462,380 - OHPLBJKB_03318 0.43 +0.4 3,462,380 - OHPLBJKB_03318 0.43 +0.3 3,462,380 - OHPLBJKB_03318 0.43 +0.0 3,462,380 - OHPLBJKB_03318 0.43 -0.5 3,462,380 - OHPLBJKB_03318 0.43 +0.5 3,462,381 + OHPLBJKB_03318 0.43 +0.0 3,462,381 + OHPLBJKB_03318 0.43 -0.9 3,462,381 + OHPLBJKB_03318 0.43 +0.5 3,462,381 + OHPLBJKB_03318 0.43 -0.4 3,462,381 + OHPLBJKB_03318 0.43 +0.2 3,462,382 - OHPLBJKB_03318 0.43 -0.3 3,462,382 - OHPLBJKB_03318 0.43 -0.4 3,462,382 - OHPLBJKB_03318 0.43 +1.0 3,462,382 - OHPLBJKB_03318 0.43 +0.8 3,462,382 - OHPLBJKB_03318 0.43 -0.2 3,462,382 - OHPLBJKB_03318 0.43 +0.8 3,462,382 - OHPLBJKB_03318 0.43 +0.4 3,462,405 + OHPLBJKB_03318 0.45 +0.2 3,462,405 + OHPLBJKB_03318 0.45 +0.7 3,462,406 - OHPLBJKB_03318 0.45 -0.1 3,462,524 + OHPLBJKB_03318 0.54 +0.2 3,462,581 + OHPLBJKB_03318 0.59 +0.4 3,462,642 + OHPLBJKB_03318 0.64 +0.4 3,462,642 + OHPLBJKB_03318 0.64 +1.7 3,462,642 + OHPLBJKB_03318 0.64 -0.6 3,462,643 - OHPLBJKB_03318 0.64 +0.9 3,462,643 - OHPLBJKB_03318 0.64 -1.0 3,462,643 - OHPLBJKB_03318 0.64 +0.1 3,462,703 + OHPLBJKB_03318 0.69 -0.3
Or see this region's nucleotide sequence