Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_03317

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_03316 and OHPLBJKB_03317 are separated by 248 nucleotidesOHPLBJKB_03317 and OHPLBJKB_03318 are separated by 101 nucleotides OHPLBJKB_03316: OHPLBJKB_03316 - IS110 family transposase IS621, at 3,459,994 to 3,460,974 _03316 OHPLBJKB_03317: OHPLBJKB_03317 - hypothetical protein, at 3,461,223 to 3,461,762 _03317 OHPLBJKB_03318: OHPLBJKB_03318 - 3-(3-hydroxy-phenyl)propionate transporter, at 3,461,864 to 3,463,075 _03318 Position (kb) 3461 3462Strain fitness (log2 ratio) -1 0 1at 3461.159 kb on + strandat 3461.162 kb on + strandat 3461.162 kb on + strandat 3461.214 kb on + strandat 3461.214 kb on + strandat 3461.214 kb on + strandat 3461.214 kb on + strandat 3461.214 kb on + strandat 3461.215 kb on - strandat 3461.215 kb on - strandat 3461.215 kb on - strandat 3461.215 kb on - strandat 3461.215 kb on - strandat 3461.215 kb on - strandat 3461.215 kb on - strandat 3461.215 kb on - strandat 3461.215 kb on - strandat 3461.215 kb on - strandat 3461.215 kb on - strandat 3461.218 kb on + strandat 3461.218 kb on + strandat 3461.218 kb on + strandat 3461.218 kb on + strandat 3461.218 kb on + strandat 3461.218 kb on + strandat 3461.219 kb on - strandat 3461.219 kb on - strandat 3461.219 kb on - strandat 3461.219 kb on - strandat 3461.224 kb on + strandat 3461.260 kb on + strandat 3461.361 kb on - strand, within OHPLBJKB_03317at 3461.368 kb on + strand, within OHPLBJKB_03317at 3461.368 kb on + strand, within OHPLBJKB_03317at 3461.368 kb on + strand, within OHPLBJKB_03317at 3461.369 kb on - strand, within OHPLBJKB_03317at 3461.369 kb on - strand, within OHPLBJKB_03317at 3461.381 kb on + strand, within OHPLBJKB_03317at 3461.489 kb on + strand, within OHPLBJKB_03317at 3461.490 kb on - strand, within OHPLBJKB_03317at 3461.555 kb on + strand, within OHPLBJKB_03317at 3461.556 kb on - strand, within OHPLBJKB_03317at 3461.556 kb on - strand, within OHPLBJKB_03317at 3461.557 kb on + strand, within OHPLBJKB_03317at 3461.558 kb on - strand, within OHPLBJKB_03317at 3461.558 kb on - strand, within OHPLBJKB_03317at 3461.627 kb on + strand, within OHPLBJKB_03317at 3461.718 kb on + strandat 3461.718 kb on + strandat 3461.745 kb on + strandat 3461.746 kb on - strandat 3461.751 kb on - strandat 3461.799 kb on + strandat 3461.801 kb on + strandat 3461.801 kb on + strandat 3461.802 kb on - strandat 3461.852 kb on + strandat 3461.853 kb on - strandat 3461.856 kb on - strandat 3461.911 kb on + strandat 3461.981 kb on + strandat 3461.982 kb on - strandat 3462.081 kb on + strand, within OHPLBJKB_03318at 3462.160 kb on + strand, within OHPLBJKB_03318at 3462.160 kb on + strand, within OHPLBJKB_03318at 3462.160 kb on + strand, within OHPLBJKB_03318at 3462.203 kb on + strand, within OHPLBJKB_03318at 3462.216 kb on + strand, within OHPLBJKB_03318at 3462.217 kb on - strand, within OHPLBJKB_03318at 3462.217 kb on - strand, within OHPLBJKB_03318at 3462.251 kb on - strand, within OHPLBJKB_03318at 3462.379 kb on + strand, within OHPLBJKB_03318at 3462.379 kb on + strand, within OHPLBJKB_03318at 3462.379 kb on + strand, within OHPLBJKB_03318at 3462.379 kb on + strand, within OHPLBJKB_03318at 3462.380 kb on - strand, within OHPLBJKB_03318at 3462.380 kb on - strand, within OHPLBJKB_03318at 3462.380 kb on - strand, within OHPLBJKB_03318at 3462.380 kb on - strand, within OHPLBJKB_03318at 3462.380 kb on - strand, within OHPLBJKB_03318at 3462.380 kb on - strand, within OHPLBJKB_03318at 3462.381 kb on + strand, within OHPLBJKB_03318at 3462.381 kb on + strand, within OHPLBJKB_03318at 3462.381 kb on + strand, within OHPLBJKB_03318at 3462.381 kb on + strand, within OHPLBJKB_03318at 3462.381 kb on + strand, within OHPLBJKB_03318at 3462.382 kb on - strand, within OHPLBJKB_03318at 3462.382 kb on - strand, within OHPLBJKB_03318at 3462.382 kb on - strand, within OHPLBJKB_03318at 3462.382 kb on - strand, within OHPLBJKB_03318at 3462.382 kb on - strand, within OHPLBJKB_03318at 3462.382 kb on - strand, within OHPLBJKB_03318at 3462.382 kb on - strand, within OHPLBJKB_03318at 3462.405 kb on + strand, within OHPLBJKB_03318at 3462.405 kb on + strand, within OHPLBJKB_03318at 3462.406 kb on - strand, within OHPLBJKB_03318at 3462.524 kb on + strand, within OHPLBJKB_03318at 3462.581 kb on + strand, within OHPLBJKB_03318at 3462.642 kb on + strand, within OHPLBJKB_03318at 3462.642 kb on + strand, within OHPLBJKB_03318at 3462.642 kb on + strand, within OHPLBJKB_03318at 3462.643 kb on - strand, within OHPLBJKB_03318at 3462.643 kb on - strand, within OHPLBJKB_03318at 3462.643 kb on - strand, within OHPLBJKB_03318at 3462.703 kb on + strand, within OHPLBJKB_03318

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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3,461,159 + +1.0
3,461,162 + +0.6
3,461,162 + +1.1
3,461,214 + +0.6
3,461,214 + +0.1
3,461,214 + +0.9
3,461,214 + +0.4
3,461,214 + -1.0
3,461,215 - -0.5
3,461,215 - -0.4
3,461,215 - +0.6
3,461,215 - -1.2
3,461,215 - -0.1
3,461,215 - +1.4
3,461,215 - +0.3
3,461,215 - +0.6
3,461,215 - -0.8
3,461,215 - +0.5
3,461,215 - -0.1
3,461,218 + +0.0
3,461,218 + +1.1
3,461,218 + -0.7
3,461,218 + +0.7
3,461,218 + -0.4
3,461,218 + +0.6
3,461,219 - -0.4
3,461,219 - -0.5
3,461,219 - -0.5
3,461,219 - -0.3
3,461,224 + -0.7
3,461,260 + -0.5
3,461,361 - OHPLBJKB_03317 0.26 +0.9
3,461,368 + OHPLBJKB_03317 0.27 +0.2
3,461,368 + OHPLBJKB_03317 0.27 -0.3
3,461,368 + OHPLBJKB_03317 0.27 +0.6
3,461,369 - OHPLBJKB_03317 0.27 -0.1
3,461,369 - OHPLBJKB_03317 0.27 -0.4
3,461,381 + OHPLBJKB_03317 0.29 -1.1
3,461,489 + OHPLBJKB_03317 0.49 +0.3
3,461,490 - OHPLBJKB_03317 0.49 -1.2
3,461,555 + OHPLBJKB_03317 0.61 -0.1
3,461,556 - OHPLBJKB_03317 0.62 +0.5
3,461,556 - OHPLBJKB_03317 0.62 -0.5
3,461,557 + OHPLBJKB_03317 0.62 -0.6
3,461,558 - OHPLBJKB_03317 0.62 +0.0
3,461,558 - OHPLBJKB_03317 0.62 +0.2
3,461,627 + OHPLBJKB_03317 0.75 -1.7
3,461,718 + +0.5
3,461,718 + -0.5
3,461,745 + -0.0
3,461,746 - -0.2
3,461,751 - +0.9
3,461,799 + +1.2
3,461,801 + +0.1
3,461,801 + +0.1
3,461,802 - +0.1
3,461,852 + -0.3
3,461,853 - +0.5
3,461,856 - -0.1
3,461,911 + +0.7
3,461,981 + +0.9
3,461,982 - +0.6
3,462,081 + OHPLBJKB_03318 0.18 +0.7
3,462,160 + OHPLBJKB_03318 0.24 +0.4
3,462,160 + OHPLBJKB_03318 0.24 +0.0
3,462,160 + OHPLBJKB_03318 0.24 -0.9
3,462,203 + OHPLBJKB_03318 0.28 -0.3
3,462,216 + OHPLBJKB_03318 0.29 -0.9
3,462,217 - OHPLBJKB_03318 0.29 +0.1
3,462,217 - OHPLBJKB_03318 0.29 -0.3
3,462,251 - OHPLBJKB_03318 0.32 +0.0
3,462,379 + OHPLBJKB_03318 0.42 -0.1
3,462,379 + OHPLBJKB_03318 0.42 +0.4
3,462,379 + OHPLBJKB_03318 0.42 -0.5
3,462,379 + OHPLBJKB_03318 0.42 -0.1
3,462,380 - OHPLBJKB_03318 0.43 +0.4
3,462,380 - OHPLBJKB_03318 0.43 +0.4
3,462,380 - OHPLBJKB_03318 0.43 +0.3
3,462,380 - OHPLBJKB_03318 0.43 +0.0
3,462,380 - OHPLBJKB_03318 0.43 -0.5
3,462,380 - OHPLBJKB_03318 0.43 +0.5
3,462,381 + OHPLBJKB_03318 0.43 +0.0
3,462,381 + OHPLBJKB_03318 0.43 -0.9
3,462,381 + OHPLBJKB_03318 0.43 +0.5
3,462,381 + OHPLBJKB_03318 0.43 -0.4
3,462,381 + OHPLBJKB_03318 0.43 +0.2
3,462,382 - OHPLBJKB_03318 0.43 -0.3
3,462,382 - OHPLBJKB_03318 0.43 -0.4
3,462,382 - OHPLBJKB_03318 0.43 +1.0
3,462,382 - OHPLBJKB_03318 0.43 +0.8
3,462,382 - OHPLBJKB_03318 0.43 -0.2
3,462,382 - OHPLBJKB_03318 0.43 +0.8
3,462,382 - OHPLBJKB_03318 0.43 +0.4
3,462,405 + OHPLBJKB_03318 0.45 +0.2
3,462,405 + OHPLBJKB_03318 0.45 +0.7
3,462,406 - OHPLBJKB_03318 0.45 -0.1
3,462,524 + OHPLBJKB_03318 0.54 +0.2
3,462,581 + OHPLBJKB_03318 0.59 +0.4
3,462,642 + OHPLBJKB_03318 0.64 +0.4
3,462,642 + OHPLBJKB_03318 0.64 +1.7
3,462,642 + OHPLBJKB_03318 0.64 -0.6
3,462,643 - OHPLBJKB_03318 0.64 +0.9
3,462,643 - OHPLBJKB_03318 0.64 -1.0
3,462,643 - OHPLBJKB_03318 0.64 +0.1
3,462,703 + OHPLBJKB_03318 0.69 -0.3

Or see this region's nucleotide sequence