Experiment: lib only
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00852 and OHPLBJKB_00853 are separated by 22 nucleotides OHPLBJKB_00853 and OHPLBJKB_00854 are separated by 254 nucleotides OHPLBJKB_00854 and OHPLBJKB_00855 are separated by 259 nucleotides
OHPLBJKB_00852: OHPLBJKB_00852 - hypothetical protein, at 884,641 to 886,185
_00852
OHPLBJKB_00853: OHPLBJKB_00853 - hypothetical protein, at 886,208 to 886,486
_00853
OHPLBJKB_00854: OHPLBJKB_00854 - IS3 family transposase ISEhe3, at 886,741 to 887,355
_00854
OHPLBJKB_00855: OHPLBJKB_00855 - Surface presentation of antigens protein SpaO, at 887,615 to 888,562
_00855
Position (kb) 886
887
888 Strain fitness (log2 ratio) -2
-1
0
1 at 885.752 kb on + strand, within OHPLBJKB_00852 at 885.834 kb on + strand, within OHPLBJKB_00852 at 886.066 kb on - strand at 886.117 kb on + strand at 886.117 kb on + strand at 886.117 kb on + strand at 886.117 kb on + strand at 886.117 kb on + strand at 886.117 kb on + strand at 886.119 kb on + strand at 886.120 kb on - strand at 886.123 kb on + strand at 886.123 kb on + strand at 886.124 kb on - strand at 886.124 kb on - strand at 886.124 kb on - strand at 887.478 kb on - strand at 888.296 kb on + strand, within OHPLBJKB_00855 at 888.346 kb on - strand, within OHPLBJKB_00855
Per-strain Table
Position Strand Gene LocusTag Fraction lib only remove 885,752 + OHPLBJKB_00852 0.72 +1.3 885,834 + OHPLBJKB_00852 0.77 -0.4 886,066 - +0.2 886,117 + +0.5 886,117 + +1.2 886,117 + -1.5 886,117 + -0.2 886,117 + +0.1 886,117 + -2.0 886,119 + +1.3 886,120 - -1.0 886,123 + -0.0 886,123 + -1.0 886,124 - -1.1 886,124 - -0.5 886,124 - +0.7 887,478 - +1.5 888,296 + OHPLBJKB_00855 0.72 +0.2 888,346 - OHPLBJKB_00855 0.77 +1.3
Or see this region's nucleotide sequence