Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01689

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01687 and OHPLBJKB_01688 are separated by 13 nucleotidesOHPLBJKB_01688 and OHPLBJKB_01689 are separated by 42 nucleotidesOHPLBJKB_01689 and OHPLBJKB_01690 are separated by 208 nucleotides OHPLBJKB_01687: OHPLBJKB_01687 - hypothetical protein, at 1,779,301 to 1,780,305 _01687 OHPLBJKB_01688: OHPLBJKB_01688 - Putative sulfur carrier protein YeeD, at 1,780,319 to 1,780,546 _01688 OHPLBJKB_01689: OHPLBJKB_01689 - Exodeoxyribonuclease I, at 1,780,589 to 1,782,016 _01689 OHPLBJKB_01690: OHPLBJKB_01690 - D-alanyl-D-alanine carboxypeptidase DacD, at 1,782,225 to 1,783,391 _01690 Position (kb) 1780 1781 1782 1783Strain fitness (log2 ratio) -2 -1 0 1 2at 1779.592 kb on + strand, within OHPLBJKB_01687at 1779.592 kb on + strand, within OHPLBJKB_01687at 1779.592 kb on + strand, within OHPLBJKB_01687at 1779.593 kb on - strand, within OHPLBJKB_01687at 1779.594 kb on + strand, within OHPLBJKB_01687at 1779.594 kb on + strand, within OHPLBJKB_01687at 1779.594 kb on + strand, within OHPLBJKB_01687at 1779.595 kb on - strand, within OHPLBJKB_01687at 1779.595 kb on - strand, within OHPLBJKB_01687at 1779.638 kb on + strand, within OHPLBJKB_01687at 1779.658 kb on + strand, within OHPLBJKB_01687at 1779.658 kb on + strand, within OHPLBJKB_01687at 1779.658 kb on + strand, within OHPLBJKB_01687at 1779.659 kb on - strand, within OHPLBJKB_01687at 1779.663 kb on + strand, within OHPLBJKB_01687at 1779.664 kb on - strand, within OHPLBJKB_01687at 1779.664 kb on - strand, within OHPLBJKB_01687at 1779.664 kb on - strand, within OHPLBJKB_01687at 1779.672 kb on + strand, within OHPLBJKB_01687at 1779.672 kb on + strand, within OHPLBJKB_01687at 1779.672 kb on + strand, within OHPLBJKB_01687at 1779.672 kb on + strand, within OHPLBJKB_01687at 1779.672 kb on + strand, within OHPLBJKB_01687at 1779.673 kb on - strand, within OHPLBJKB_01687at 1779.673 kb on - strand, within OHPLBJKB_01687at 1779.673 kb on - strand, within OHPLBJKB_01687at 1779.673 kb on - strand, within OHPLBJKB_01687at 1779.673 kb on - strand, within OHPLBJKB_01687at 1779.673 kb on - strand, within OHPLBJKB_01687at 1779.673 kb on - strand, within OHPLBJKB_01687at 1779.673 kb on - strand, within OHPLBJKB_01687at 1779.678 kb on + strand, within OHPLBJKB_01687at 1779.678 kb on + strand, within OHPLBJKB_01687at 1779.679 kb on - strand, within OHPLBJKB_01687at 1779.693 kb on + strand, within OHPLBJKB_01687at 1779.693 kb on + strand, within OHPLBJKB_01687at 1779.819 kb on + strand, within OHPLBJKB_01687at 1779.819 kb on + strand, within OHPLBJKB_01687at 1779.820 kb on - strand, within OHPLBJKB_01687at 1779.884 kb on + strand, within OHPLBJKB_01687at 1779.952 kb on - strand, within OHPLBJKB_01687at 1779.952 kb on - strand, within OHPLBJKB_01687at 1779.985 kb on + strand, within OHPLBJKB_01687at 1779.985 kb on + strand, within OHPLBJKB_01687at 1779.990 kb on + strand, within OHPLBJKB_01687at 1779.990 kb on + strand, within OHPLBJKB_01687at 1780.036 kb on - strand, within OHPLBJKB_01687at 1780.094 kb on + strand, within OHPLBJKB_01687at 1780.094 kb on + strand, within OHPLBJKB_01687at 1780.095 kb on - strand, within OHPLBJKB_01687at 1780.095 kb on - strand, within OHPLBJKB_01687at 1780.116 kb on - strand, within OHPLBJKB_01687at 1780.214 kb on + strandat 1780.214 kb on + strandat 1780.218 kb on + strandat 1780.219 kb on - strandat 1780.255 kb on + strandat 1780.255 kb on + strandat 1780.256 kb on - strandat 1780.256 kb on - strandat 1780.273 kb on - strandat 1780.303 kb on + strandat 1780.304 kb on - strandat 1780.304 kb on - strandat 1780.307 kb on + strandat 1780.307 kb on + strandat 1780.308 kb on - strandat 1780.308 kb on - strandat 1780.327 kb on + strandat 1780.371 kb on + strand, within OHPLBJKB_01688at 1780.371 kb on + strand, within OHPLBJKB_01688at 1780.371 kb on + strand, within OHPLBJKB_01688at 1780.371 kb on + strand, within OHPLBJKB_01688at 1780.371 kb on + strand, within OHPLBJKB_01688at 1780.371 kb on + strand, within OHPLBJKB_01688at 1780.371 kb on + strand, within OHPLBJKB_01688at 1780.419 kb on + strand, within OHPLBJKB_01688at 1780.420 kb on - strand, within OHPLBJKB_01688at 1780.625 kb on + strandat 1780.914 kb on + strand, within OHPLBJKB_01689at 1780.914 kb on + strand, within OHPLBJKB_01689at 1780.914 kb on + strand, within OHPLBJKB_01689at 1780.915 kb on - strand, within OHPLBJKB_01689at 1780.915 kb on - strand, within OHPLBJKB_01689at 1780.915 kb on - strand, within OHPLBJKB_01689at 1780.945 kb on + strand, within OHPLBJKB_01689at 1781.077 kb on + strand, within OHPLBJKB_01689at 1781.078 kb on - strand, within OHPLBJKB_01689at 1781.104 kb on + strand, within OHPLBJKB_01689at 1781.105 kb on - strand, within OHPLBJKB_01689at 1781.105 kb on - strand, within OHPLBJKB_01689at 1781.111 kb on - strand, within OHPLBJKB_01689at 1781.166 kb on + strand, within OHPLBJKB_01689at 1781.167 kb on - strand, within OHPLBJKB_01689at 1781.167 kb on - strand, within OHPLBJKB_01689at 1781.168 kb on + strand, within OHPLBJKB_01689at 1781.168 kb on + strand, within OHPLBJKB_01689at 1781.169 kb on - strand, within OHPLBJKB_01689at 1781.169 kb on - strand, within OHPLBJKB_01689at 1781.169 kb on - strand, within OHPLBJKB_01689at 1781.169 kb on - strand, within OHPLBJKB_01689at 1781.169 kb on - strand, within OHPLBJKB_01689at 1781.236 kb on + strand, within OHPLBJKB_01689at 1781.237 kb on - strand, within OHPLBJKB_01689at 1781.237 kb on - strand, within OHPLBJKB_01689at 1781.377 kb on + strand, within OHPLBJKB_01689at 1781.378 kb on - strand, within OHPLBJKB_01689at 1781.426 kb on + strand, within OHPLBJKB_01689at 1781.446 kb on + strand, within OHPLBJKB_01689at 1781.454 kb on + strand, within OHPLBJKB_01689at 1781.511 kb on - strand, within OHPLBJKB_01689at 1781.597 kb on - strand, within OHPLBJKB_01689at 1781.607 kb on - strand, within OHPLBJKB_01689at 1781.819 kb on - strand, within OHPLBJKB_01689at 1781.822 kb on + strand, within OHPLBJKB_01689at 1781.822 kb on + strand, within OHPLBJKB_01689at 1781.822 kb on + strand, within OHPLBJKB_01689at 1781.823 kb on - strand, within OHPLBJKB_01689at 1781.823 kb on - strand, within OHPLBJKB_01689at 1781.823 kb on - strand, within OHPLBJKB_01689at 1781.823 kb on - strand, within OHPLBJKB_01689at 1781.843 kb on + strand, within OHPLBJKB_01689at 1781.844 kb on - strand, within OHPLBJKB_01689at 1782.002 kb on - strandat 1782.060 kb on - strandat 1782.138 kb on - strandat 1782.158 kb on + strandat 1782.158 kb on + strandat 1782.159 kb on - strandat 1782.178 kb on + strandat 1782.179 kb on - strandat 1782.199 kb on + strandat 1782.200 kb on - strandat 1782.243 kb on - strandat 1782.271 kb on + strandat 1782.271 kb on + strandat 1782.272 kb on - strandat 1782.355 kb on - strand, within OHPLBJKB_01690at 1782.435 kb on + strand, within OHPLBJKB_01690at 1782.519 kb on - strand, within OHPLBJKB_01690at 1782.598 kb on + strand, within OHPLBJKB_01690at 1782.599 kb on - strand, within OHPLBJKB_01690at 1782.642 kb on + strand, within OHPLBJKB_01690at 1782.643 kb on - strand, within OHPLBJKB_01690at 1782.643 kb on - strand, within OHPLBJKB_01690at 1782.643 kb on - strand, within OHPLBJKB_01690at 1782.644 kb on + strand, within OHPLBJKB_01690at 1782.645 kb on - strand, within OHPLBJKB_01690at 1782.687 kb on + strand, within OHPLBJKB_01690at 1782.759 kb on - strand, within OHPLBJKB_01690at 1782.776 kb on - strand, within OHPLBJKB_01690at 1782.819 kb on + strand, within OHPLBJKB_01690at 1782.824 kb on + strand, within OHPLBJKB_01690at 1782.824 kb on + strand, within OHPLBJKB_01690at 1782.824 kb on + strand, within OHPLBJKB_01690at 1782.824 kb on + strand, within OHPLBJKB_01690at 1782.825 kb on - strand, within OHPLBJKB_01690at 1782.825 kb on - strand, within OHPLBJKB_01690at 1782.828 kb on + strand, within OHPLBJKB_01690at 1782.828 kb on + strand, within OHPLBJKB_01690at 1782.828 kb on + strand, within OHPLBJKB_01690at 1782.828 kb on + strand, within OHPLBJKB_01690at 1782.828 kb on + strand, within OHPLBJKB_01690at 1782.828 kb on + strand, within OHPLBJKB_01690at 1782.829 kb on - strand, within OHPLBJKB_01690at 1782.829 kb on - strand, within OHPLBJKB_01690at 1782.829 kb on - strand, within OHPLBJKB_01690at 1782.829 kb on - strand, within OHPLBJKB_01690at 1782.829 kb on - strand, within OHPLBJKB_01690at 1782.829 kb on - strand, within OHPLBJKB_01690at 1782.829 kb on - strand, within OHPLBJKB_01690at 1782.883 kb on + strand, within OHPLBJKB_01690at 1782.884 kb on - strand, within OHPLBJKB_01690at 1782.929 kb on + strand, within OHPLBJKB_01690at 1782.930 kb on - strand, within OHPLBJKB_01690at 1782.930 kb on - strand, within OHPLBJKB_01690at 1782.930 kb on - strand, within OHPLBJKB_01690

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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1,779,592 + OHPLBJKB_01687 0.29 -0.2
1,779,592 + OHPLBJKB_01687 0.29 -0.3
1,779,592 + OHPLBJKB_01687 0.29 +1.1
1,779,593 - OHPLBJKB_01687 0.29 -1.9
1,779,594 + OHPLBJKB_01687 0.29 +0.4
1,779,594 + OHPLBJKB_01687 0.29 -0.1
1,779,594 + OHPLBJKB_01687 0.29 +1.1
1,779,595 - OHPLBJKB_01687 0.29 -0.5
1,779,595 - OHPLBJKB_01687 0.29 +0.5
1,779,638 + OHPLBJKB_01687 0.34 +0.4
1,779,658 + OHPLBJKB_01687 0.36 -0.2
1,779,658 + OHPLBJKB_01687 0.36 -0.0
1,779,658 + OHPLBJKB_01687 0.36 -0.4
1,779,659 - OHPLBJKB_01687 0.36 +0.1
1,779,663 + OHPLBJKB_01687 0.36 +1.1
1,779,664 - OHPLBJKB_01687 0.36 +0.4
1,779,664 - OHPLBJKB_01687 0.36 -0.4
1,779,664 - OHPLBJKB_01687 0.36 +0.9
1,779,672 + OHPLBJKB_01687 0.37 +0.3
1,779,672 + OHPLBJKB_01687 0.37 +0.7
1,779,672 + OHPLBJKB_01687 0.37 +0.2
1,779,672 + OHPLBJKB_01687 0.37 +0.3
1,779,672 + OHPLBJKB_01687 0.37 +0.7
1,779,673 - OHPLBJKB_01687 0.37 +0.8
1,779,673 - OHPLBJKB_01687 0.37 -0.7
1,779,673 - OHPLBJKB_01687 0.37 +0.9
1,779,673 - OHPLBJKB_01687 0.37 +1.7
1,779,673 - OHPLBJKB_01687 0.37 +0.1
1,779,673 - OHPLBJKB_01687 0.37 -0.9
1,779,673 - OHPLBJKB_01687 0.37 +0.7
1,779,673 - OHPLBJKB_01687 0.37 -1.2
1,779,678 + OHPLBJKB_01687 0.38 +0.2
1,779,678 + OHPLBJKB_01687 0.38 -0.1
1,779,679 - OHPLBJKB_01687 0.38 +1.1
1,779,693 + OHPLBJKB_01687 0.39 +1.3
1,779,693 + OHPLBJKB_01687 0.39 -0.0
1,779,819 + OHPLBJKB_01687 0.52 -0.3
1,779,819 + OHPLBJKB_01687 0.52 -0.2
1,779,820 - OHPLBJKB_01687 0.52 +1.7
1,779,884 + OHPLBJKB_01687 0.58 +0.8
1,779,952 - OHPLBJKB_01687 0.65 +0.4
1,779,952 - OHPLBJKB_01687 0.65 +0.2
1,779,985 + OHPLBJKB_01687 0.68 -0.6
1,779,985 + OHPLBJKB_01687 0.68 -0.3
1,779,990 + OHPLBJKB_01687 0.69 +0.0
1,779,990 + OHPLBJKB_01687 0.69 -1.1
1,780,036 - OHPLBJKB_01687 0.73 -1.0
1,780,094 + OHPLBJKB_01687 0.79 -1.4
1,780,094 + OHPLBJKB_01687 0.79 +0.8
1,780,095 - OHPLBJKB_01687 0.79 +0.8
1,780,095 - OHPLBJKB_01687 0.79 +1.3
1,780,116 - OHPLBJKB_01687 0.81 -0.3
1,780,214 + +0.8
1,780,214 + -1.9
1,780,218 + -0.1
1,780,219 - +0.1
1,780,255 + -0.8
1,780,255 + -0.5
1,780,256 - +1.2
1,780,256 - -0.2
1,780,273 - -0.4
1,780,303 + -0.7
1,780,304 - -0.5
1,780,304 - -0.6
1,780,307 + -0.7
1,780,307 + +0.2
1,780,308 - -2.4
1,780,308 - -1.8
1,780,327 + +0.3
1,780,371 + OHPLBJKB_01688 0.23 -0.2
1,780,371 + OHPLBJKB_01688 0.23 +1.3
1,780,371 + OHPLBJKB_01688 0.23 +0.8
1,780,371 + OHPLBJKB_01688 0.23 -1.0
1,780,371 + OHPLBJKB_01688 0.23 +0.9
1,780,371 + OHPLBJKB_01688 0.23 -0.0
1,780,371 + OHPLBJKB_01688 0.23 -0.7
1,780,419 + OHPLBJKB_01688 0.44 +1.9
1,780,420 - OHPLBJKB_01688 0.44 -0.6
1,780,625 + +0.4
1,780,914 + OHPLBJKB_01689 0.23 +1.4
1,780,914 + OHPLBJKB_01689 0.23 -1.0
1,780,914 + OHPLBJKB_01689 0.23 +0.2
1,780,915 - OHPLBJKB_01689 0.23 -0.8
1,780,915 - OHPLBJKB_01689 0.23 -0.6
1,780,915 - OHPLBJKB_01689 0.23 +0.1
1,780,945 + OHPLBJKB_01689 0.25 -0.7
1,781,077 + OHPLBJKB_01689 0.34 -0.4
1,781,078 - OHPLBJKB_01689 0.34 +0.1
1,781,104 + OHPLBJKB_01689 0.36 +2.7
1,781,105 - OHPLBJKB_01689 0.36 +0.4
1,781,105 - OHPLBJKB_01689 0.36 +0.0
1,781,111 - OHPLBJKB_01689 0.37 +1.1
1,781,166 + OHPLBJKB_01689 0.40 -0.1
1,781,167 - OHPLBJKB_01689 0.40 -1.0
1,781,167 - OHPLBJKB_01689 0.40 -1.0
1,781,168 + OHPLBJKB_01689 0.41 -0.7
1,781,168 + OHPLBJKB_01689 0.41 -1.6
1,781,169 - OHPLBJKB_01689 0.41 +0.2
1,781,169 - OHPLBJKB_01689 0.41 -0.3
1,781,169 - OHPLBJKB_01689 0.41 -0.4
1,781,169 - OHPLBJKB_01689 0.41 +0.2
1,781,169 - OHPLBJKB_01689 0.41 +1.4
1,781,236 + OHPLBJKB_01689 0.45 -0.9
1,781,237 - OHPLBJKB_01689 0.45 +0.7
1,781,237 - OHPLBJKB_01689 0.45 -1.2
1,781,377 + OHPLBJKB_01689 0.55 -0.2
1,781,378 - OHPLBJKB_01689 0.55 -0.5
1,781,426 + OHPLBJKB_01689 0.59 -1.2
1,781,446 + OHPLBJKB_01689 0.60 -0.4
1,781,454 + OHPLBJKB_01689 0.61 +2.1
1,781,511 - OHPLBJKB_01689 0.65 +0.2
1,781,597 - OHPLBJKB_01689 0.71 +0.3
1,781,607 - OHPLBJKB_01689 0.71 +0.2
1,781,819 - OHPLBJKB_01689 0.86 +0.4
1,781,822 + OHPLBJKB_01689 0.86 +0.6
1,781,822 + OHPLBJKB_01689 0.86 +0.0
1,781,822 + OHPLBJKB_01689 0.86 -0.8
1,781,823 - OHPLBJKB_01689 0.86 +0.1
1,781,823 - OHPLBJKB_01689 0.86 +0.3
1,781,823 - OHPLBJKB_01689 0.86 -0.9
1,781,823 - OHPLBJKB_01689 0.86 -0.1
1,781,843 + OHPLBJKB_01689 0.88 -1.1
1,781,844 - OHPLBJKB_01689 0.88 -0.8
1,782,002 - +0.4
1,782,060 - +0.4
1,782,138 - -0.6
1,782,158 + -1.3
1,782,158 + -1.2
1,782,159 - -1.5
1,782,178 + +1.0
1,782,179 - +0.7
1,782,199 + -1.0
1,782,200 - -1.0
1,782,243 - +1.1
1,782,271 + +0.0
1,782,271 + +0.3
1,782,272 - +0.0
1,782,355 - OHPLBJKB_01690 0.11 -0.4
1,782,435 + OHPLBJKB_01690 0.18 -0.8
1,782,519 - OHPLBJKB_01690 0.25 +0.1
1,782,598 + OHPLBJKB_01690 0.32 +0.3
1,782,599 - OHPLBJKB_01690 0.32 +0.1
1,782,642 + OHPLBJKB_01690 0.36 +0.9
1,782,643 - OHPLBJKB_01690 0.36 +1.8
1,782,643 - OHPLBJKB_01690 0.36 +0.4
1,782,643 - OHPLBJKB_01690 0.36 -0.6
1,782,644 + OHPLBJKB_01690 0.36 +0.7
1,782,645 - OHPLBJKB_01690 0.36 -1.7
1,782,687 + OHPLBJKB_01690 0.40 -0.1
1,782,759 - OHPLBJKB_01690 0.46 -0.8
1,782,776 - OHPLBJKB_01690 0.47 -1.5
1,782,819 + OHPLBJKB_01690 0.51 -0.5
1,782,824 + OHPLBJKB_01690 0.51 +0.1
1,782,824 + OHPLBJKB_01690 0.51 +0.9
1,782,824 + OHPLBJKB_01690 0.51 +0.2
1,782,824 + OHPLBJKB_01690 0.51 -0.0
1,782,825 - OHPLBJKB_01690 0.51 -0.1
1,782,825 - OHPLBJKB_01690 0.51 -1.0
1,782,828 + OHPLBJKB_01690 0.52 -0.5
1,782,828 + OHPLBJKB_01690 0.52 +1.4
1,782,828 + OHPLBJKB_01690 0.52 -1.1
1,782,828 + OHPLBJKB_01690 0.52 -0.5
1,782,828 + OHPLBJKB_01690 0.52 -0.2
1,782,828 + OHPLBJKB_01690 0.52 +0.3
1,782,829 - OHPLBJKB_01690 0.52 -1.4
1,782,829 - OHPLBJKB_01690 0.52 -1.7
1,782,829 - OHPLBJKB_01690 0.52 +0.3
1,782,829 - OHPLBJKB_01690 0.52 +0.1
1,782,829 - OHPLBJKB_01690 0.52 -1.1
1,782,829 - OHPLBJKB_01690 0.52 -0.5
1,782,829 - OHPLBJKB_01690 0.52 +0.0
1,782,883 + OHPLBJKB_01690 0.56 -0.5
1,782,884 - OHPLBJKB_01690 0.56 -0.9
1,782,929 + OHPLBJKB_01690 0.60 -0.2
1,782,930 - OHPLBJKB_01690 0.60 +1.3
1,782,930 - OHPLBJKB_01690 0.60 +0.3
1,782,930 - OHPLBJKB_01690 0.60 -0.6

Or see this region's nucleotide sequence