Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00424

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00422 and OHPLBJKB_00423 overlap by 4 nucleotidesOHPLBJKB_00423 and OHPLBJKB_00424 overlap by 25 nucleotidesOHPLBJKB_00424 and OHPLBJKB_00425 are separated by 476 nucleotides OHPLBJKB_00422: OHPLBJKB_00422 - Shikimate dehydrogenase (NADP(+)), at 435,720 to 436,538 _00422 OHPLBJKB_00423: OHPLBJKB_00423 - hypothetical protein, at 436,535 to 436,792 _00423 OHPLBJKB_00424: OHPLBJKB_00424 - Protein YrdA, at 436,768 to 437,322 _00424 OHPLBJKB_00425: OHPLBJKB_00425 - 16S ribosomal RNA, at 437,799 to 439,336 _00425 Position (kb) 436 437 438Strain fitness (log2 ratio) -2 -1 0 1at 435.803 kb on + strand, within OHPLBJKB_00422at 435.803 kb on + strand, within OHPLBJKB_00422at 435.872 kb on + strand, within OHPLBJKB_00422at 435.873 kb on - strand, within OHPLBJKB_00422at 436.030 kb on + strand, within OHPLBJKB_00422at 436.030 kb on + strand, within OHPLBJKB_00422at 436.030 kb on + strand, within OHPLBJKB_00422at 436.031 kb on - strand, within OHPLBJKB_00422at 436.031 kb on - strand, within OHPLBJKB_00422at 436.031 kb on - strand, within OHPLBJKB_00422at 436.078 kb on + strand, within OHPLBJKB_00422at 436.079 kb on - strand, within OHPLBJKB_00422at 436.083 kb on - strand, within OHPLBJKB_00422at 436.123 kb on + strand, within OHPLBJKB_00422at 436.123 kb on + strand, within OHPLBJKB_00422at 436.124 kb on - strand, within OHPLBJKB_00422at 436.159 kb on + strand, within OHPLBJKB_00422at 436.160 kb on - strand, within OHPLBJKB_00422at 436.160 kb on - strand, within OHPLBJKB_00422at 436.221 kb on - strand, within OHPLBJKB_00422at 436.221 kb on - strand, within OHPLBJKB_00422at 436.221 kb on - strand, within OHPLBJKB_00422at 436.236 kb on - strand, within OHPLBJKB_00422at 436.274 kb on + strand, within OHPLBJKB_00422at 436.274 kb on + strand, within OHPLBJKB_00422at 436.275 kb on - strand, within OHPLBJKB_00422at 436.305 kb on - strand, within OHPLBJKB_00422at 436.344 kb on + strand, within OHPLBJKB_00422at 436.344 kb on + strand, within OHPLBJKB_00422at 436.344 kb on + strand, within OHPLBJKB_00422at 436.350 kb on + strand, within OHPLBJKB_00422at 436.351 kb on - strand, within OHPLBJKB_00422at 436.362 kb on + strand, within OHPLBJKB_00422at 436.362 kb on + strand, within OHPLBJKB_00422at 436.363 kb on - strand, within OHPLBJKB_00422at 436.363 kb on - strand, within OHPLBJKB_00422at 436.363 kb on - strand, within OHPLBJKB_00422at 436.495 kb on + strandat 436.496 kb on - strandat 436.496 kb on - strandat 436.496 kb on - strandat 436.496 kb on - strandat 436.496 kb on - strandat 436.505 kb on + strandat 436.505 kb on + strandat 436.507 kb on + strandat 436.508 kb on - strandat 436.508 kb on - strandat 436.593 kb on + strand, within OHPLBJKB_00423at 436.594 kb on - strand, within OHPLBJKB_00423at 436.594 kb on - strand, within OHPLBJKB_00423at 436.594 kb on - strand, within OHPLBJKB_00423at 436.618 kb on + strand, within OHPLBJKB_00423at 436.618 kb on + strand, within OHPLBJKB_00423at 436.659 kb on - strand, within OHPLBJKB_00423at 436.667 kb on - strand, within OHPLBJKB_00423at 436.675 kb on + strand, within OHPLBJKB_00423at 436.743 kb on + strand, within OHPLBJKB_00423at 436.743 kb on + strand, within OHPLBJKB_00423at 436.744 kb on - strand, within OHPLBJKB_00423at 436.820 kb on + strandat 436.824 kb on + strand, within OHPLBJKB_00424at 436.824 kb on + strand, within OHPLBJKB_00424at 436.825 kb on - strand, within OHPLBJKB_00424at 436.836 kb on - strand, within OHPLBJKB_00424at 436.836 kb on - strand, within OHPLBJKB_00424at 436.864 kb on + strand, within OHPLBJKB_00424at 436.898 kb on + strand, within OHPLBJKB_00424at 436.904 kb on + strand, within OHPLBJKB_00424at 436.924 kb on - strand, within OHPLBJKB_00424at 436.969 kb on + strand, within OHPLBJKB_00424at 436.969 kb on + strand, within OHPLBJKB_00424at 436.969 kb on + strand, within OHPLBJKB_00424at 436.969 kb on + strand, within OHPLBJKB_00424at 436.970 kb on - strand, within OHPLBJKB_00424at 436.970 kb on - strand, within OHPLBJKB_00424at 436.970 kb on - strand, within OHPLBJKB_00424at 436.970 kb on - strand, within OHPLBJKB_00424at 436.970 kb on - strand, within OHPLBJKB_00424at 436.970 kb on - strand, within OHPLBJKB_00424at 436.970 kb on - strand, within OHPLBJKB_00424at 436.973 kb on - strand, within OHPLBJKB_00424at 436.973 kb on - strand, within OHPLBJKB_00424at 436.973 kb on - strand, within OHPLBJKB_00424at 436.988 kb on - strand, within OHPLBJKB_00424at 437.113 kb on - strand, within OHPLBJKB_00424at 437.130 kb on + strand, within OHPLBJKB_00424at 437.130 kb on + strand, within OHPLBJKB_00424at 437.130 kb on + strand, within OHPLBJKB_00424at 437.130 kb on + strand, within OHPLBJKB_00424at 437.130 kb on + strand, within OHPLBJKB_00424at 437.130 kb on + strand, within OHPLBJKB_00424at 437.131 kb on - strand, within OHPLBJKB_00424at 437.131 kb on - strand, within OHPLBJKB_00424at 437.168 kb on - strand, within OHPLBJKB_00424at 437.168 kb on - strand, within OHPLBJKB_00424at 437.171 kb on + strand, within OHPLBJKB_00424at 437.171 kb on + strand, within OHPLBJKB_00424at 437.171 kb on + strand, within OHPLBJKB_00424at 437.171 kb on + strand, within OHPLBJKB_00424at 437.171 kb on + strand, within OHPLBJKB_00424at 437.171 kb on + strand, within OHPLBJKB_00424at 437.171 kb on + strand, within OHPLBJKB_00424at 437.171 kb on + strand, within OHPLBJKB_00424at 437.171 kb on + strand, within OHPLBJKB_00424at 437.171 kb on + strand, within OHPLBJKB_00424at 437.171 kb on + strand, within OHPLBJKB_00424at 437.172 kb on - strand, within OHPLBJKB_00424at 437.172 kb on - strand, within OHPLBJKB_00424at 437.172 kb on - strand, within OHPLBJKB_00424at 437.172 kb on - strand, within OHPLBJKB_00424at 437.172 kb on - strand, within OHPLBJKB_00424at 437.172 kb on - strand, within OHPLBJKB_00424at 437.172 kb on - strand, within OHPLBJKB_00424at 437.172 kb on - strand, within OHPLBJKB_00424at 437.172 kb on - strand, within OHPLBJKB_00424at 437.172 kb on - strand, within OHPLBJKB_00424at 437.176 kb on + strand, within OHPLBJKB_00424at 437.176 kb on + strand, within OHPLBJKB_00424at 437.176 kb on + strand, within OHPLBJKB_00424at 437.176 kb on + strand, within OHPLBJKB_00424at 437.176 kb on + strand, within OHPLBJKB_00424at 437.176 kb on + strand, within OHPLBJKB_00424at 437.176 kb on + strand, within OHPLBJKB_00424at 437.176 kb on + strand, within OHPLBJKB_00424at 437.177 kb on - strand, within OHPLBJKB_00424at 437.177 kb on - strand, within OHPLBJKB_00424at 437.177 kb on - strand, within OHPLBJKB_00424at 437.177 kb on - strand, within OHPLBJKB_00424at 437.177 kb on - strand, within OHPLBJKB_00424at 437.177 kb on - strand, within OHPLBJKB_00424at 437.322 kb on + strandat 437.322 kb on + strandat 437.322 kb on + strandat 437.322 kb on + strandat 437.322 kb on + strandat 437.322 kb on + strandat 437.323 kb on - strandat 437.323 kb on - strandat 437.323 kb on - strandat 437.323 kb on - strandat 437.323 kb on - strandat 437.323 kb on - strandat 437.323 kb on - strandat 437.323 kb on - strandat 437.323 kb on - strandat 437.323 kb on - strandat 437.323 kb on - strandat 437.323 kb on - strandat 437.326 kb on + strandat 437.327 kb on - strandat 437.327 kb on - strandat 437.346 kb on + strandat 437.346 kb on + strandat 437.347 kb on - strandat 437.349 kb on + strandat 437.368 kb on - strandat 437.389 kb on + strandat 437.389 kb on + strandat 437.390 kb on - strandat 437.497 kb on + strandat 437.498 kb on - strandat 437.499 kb on + strandat 437.606 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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435,803 + OHPLBJKB_00422 0.10 +0.4
435,803 + OHPLBJKB_00422 0.10 -0.1
435,872 + OHPLBJKB_00422 0.19 -1.0
435,873 - OHPLBJKB_00422 0.19 +0.8
436,030 + OHPLBJKB_00422 0.38 -0.2
436,030 + OHPLBJKB_00422 0.38 -1.4
436,030 + OHPLBJKB_00422 0.38 -0.1
436,031 - OHPLBJKB_00422 0.38 +0.9
436,031 - OHPLBJKB_00422 0.38 -1.4
436,031 - OHPLBJKB_00422 0.38 +0.6
436,078 + OHPLBJKB_00422 0.44 +1.5
436,079 - OHPLBJKB_00422 0.44 -0.1
436,083 - OHPLBJKB_00422 0.44 -0.3
436,123 + OHPLBJKB_00422 0.49 -1.4
436,123 + OHPLBJKB_00422 0.49 -0.0
436,124 - OHPLBJKB_00422 0.49 +0.8
436,159 + OHPLBJKB_00422 0.54 -0.5
436,160 - OHPLBJKB_00422 0.54 -0.0
436,160 - OHPLBJKB_00422 0.54 +0.5
436,221 - OHPLBJKB_00422 0.61 -0.9
436,221 - OHPLBJKB_00422 0.61 -0.5
436,221 - OHPLBJKB_00422 0.61 -1.4
436,236 - OHPLBJKB_00422 0.63 +0.1
436,274 + OHPLBJKB_00422 0.68 -1.7
436,274 + OHPLBJKB_00422 0.68 -1.5
436,275 - OHPLBJKB_00422 0.68 +0.5
436,305 - OHPLBJKB_00422 0.71 -1.8
436,344 + OHPLBJKB_00422 0.76 +0.4
436,344 + OHPLBJKB_00422 0.76 -2.3
436,344 + OHPLBJKB_00422 0.76 -0.5
436,350 + OHPLBJKB_00422 0.77 -0.7
436,351 - OHPLBJKB_00422 0.77 -0.1
436,362 + OHPLBJKB_00422 0.78 -0.5
436,362 + OHPLBJKB_00422 0.78 -0.5
436,363 - OHPLBJKB_00422 0.79 -1.4
436,363 - OHPLBJKB_00422 0.79 -1.4
436,363 - OHPLBJKB_00422 0.79 -1.2
436,495 + +0.2
436,496 - +0.4
436,496 - -0.7
436,496 - -0.1
436,496 - +0.3
436,496 - -0.8
436,505 + -0.1
436,505 + -0.2
436,507 + -1.1
436,508 - +0.3
436,508 - -0.5
436,593 + OHPLBJKB_00423 0.22 +0.5
436,594 - OHPLBJKB_00423 0.23 -0.8
436,594 - OHPLBJKB_00423 0.23 +0.9
436,594 - OHPLBJKB_00423 0.23 +0.1
436,618 + OHPLBJKB_00423 0.32 +0.3
436,618 + OHPLBJKB_00423 0.32 -0.0
436,659 - OHPLBJKB_00423 0.48 +0.3
436,667 - OHPLBJKB_00423 0.51 -0.9
436,675 + OHPLBJKB_00423 0.54 +0.7
436,743 + OHPLBJKB_00423 0.81 -0.0
436,743 + OHPLBJKB_00423 0.81 -0.0
436,744 - OHPLBJKB_00423 0.81 -0.0
436,820 + -0.3
436,824 + OHPLBJKB_00424 0.10 -0.3
436,824 + OHPLBJKB_00424 0.10 +0.0
436,825 - OHPLBJKB_00424 0.10 -0.1
436,836 - OHPLBJKB_00424 0.12 +0.0
436,836 - OHPLBJKB_00424 0.12 +0.3
436,864 + OHPLBJKB_00424 0.17 -1.1
436,898 + OHPLBJKB_00424 0.23 +1.1
436,904 + OHPLBJKB_00424 0.25 +0.9
436,924 - OHPLBJKB_00424 0.28 -0.6
436,969 + OHPLBJKB_00424 0.36 -2.0
436,969 + OHPLBJKB_00424 0.36 -0.4
436,969 + OHPLBJKB_00424 0.36 +0.2
436,969 + OHPLBJKB_00424 0.36 -0.6
436,970 - OHPLBJKB_00424 0.36 -0.5
436,970 - OHPLBJKB_00424 0.36 -0.2
436,970 - OHPLBJKB_00424 0.36 -0.1
436,970 - OHPLBJKB_00424 0.36 -0.0
436,970 - OHPLBJKB_00424 0.36 -0.8
436,970 - OHPLBJKB_00424 0.36 -0.8
436,970 - OHPLBJKB_00424 0.36 +0.1
436,973 - OHPLBJKB_00424 0.37 +0.4
436,973 - OHPLBJKB_00424 0.37 -0.3
436,973 - OHPLBJKB_00424 0.37 -0.7
436,988 - OHPLBJKB_00424 0.40 +0.3
437,113 - OHPLBJKB_00424 0.62 +0.1
437,130 + OHPLBJKB_00424 0.65 +0.2
437,130 + OHPLBJKB_00424 0.65 -0.4
437,130 + OHPLBJKB_00424 0.65 -1.8
437,130 + OHPLBJKB_00424 0.65 -1.2
437,130 + OHPLBJKB_00424 0.65 -1.6
437,130 + OHPLBJKB_00424 0.65 -0.7
437,131 - OHPLBJKB_00424 0.65 -0.2
437,131 - OHPLBJKB_00424 0.65 +0.6
437,168 - OHPLBJKB_00424 0.72 -0.1
437,168 - OHPLBJKB_00424 0.72 -0.3
437,171 + OHPLBJKB_00424 0.73 +1.4
437,171 + OHPLBJKB_00424 0.73 -0.4
437,171 + OHPLBJKB_00424 0.73 +0.6
437,171 + OHPLBJKB_00424 0.73 -0.4
437,171 + OHPLBJKB_00424 0.73 -1.0
437,171 + OHPLBJKB_00424 0.73 +0.1
437,171 + OHPLBJKB_00424 0.73 +0.6
437,171 + OHPLBJKB_00424 0.73 -0.7
437,171 + OHPLBJKB_00424 0.73 +0.6
437,171 + OHPLBJKB_00424 0.73 +0.9
437,171 + OHPLBJKB_00424 0.73 +1.7
437,172 - OHPLBJKB_00424 0.73 -0.1
437,172 - OHPLBJKB_00424 0.73 -0.1
437,172 - OHPLBJKB_00424 0.73 -0.6
437,172 - OHPLBJKB_00424 0.73 -0.0
437,172 - OHPLBJKB_00424 0.73 -1.5
437,172 - OHPLBJKB_00424 0.73 -0.8
437,172 - OHPLBJKB_00424 0.73 -0.6
437,172 - OHPLBJKB_00424 0.73 +0.8
437,172 - OHPLBJKB_00424 0.73 -0.7
437,172 - OHPLBJKB_00424 0.73 +0.3
437,176 + OHPLBJKB_00424 0.74 -0.3
437,176 + OHPLBJKB_00424 0.74 +0.5
437,176 + OHPLBJKB_00424 0.74 -0.4
437,176 + OHPLBJKB_00424 0.74 -1.2
437,176 + OHPLBJKB_00424 0.74 -0.2
437,176 + OHPLBJKB_00424 0.74 -0.5
437,176 + OHPLBJKB_00424 0.74 +1.1
437,176 + OHPLBJKB_00424 0.74 -0.8
437,177 - OHPLBJKB_00424 0.74 +0.4
437,177 - OHPLBJKB_00424 0.74 +0.3
437,177 - OHPLBJKB_00424 0.74 +0.3
437,177 - OHPLBJKB_00424 0.74 -0.1
437,177 - OHPLBJKB_00424 0.74 -0.0
437,177 - OHPLBJKB_00424 0.74 -0.2
437,322 + +0.7
437,322 + -0.4
437,322 + -0.8
437,322 + +0.1
437,322 + +0.6
437,322 + -0.0
437,323 - +0.9
437,323 - -0.3
437,323 - -2.1
437,323 - -0.3
437,323 - +0.4
437,323 - +0.0
437,323 - +0.4
437,323 - -0.1
437,323 - -0.1
437,323 - +0.1
437,323 - +0.7
437,323 - +0.1
437,326 + -0.5
437,327 - +0.6
437,327 - -0.4
437,346 + +0.5
437,346 + +1.0
437,347 - -0.5
437,349 + -0.1
437,368 - +0.6
437,389 + +0.4
437,389 + +0.7
437,390 - +0.0
437,497 + -0.0
437,498 - +0.3
437,499 + +0.2
437,606 + -0.5

Or see this region's nucleotide sequence