Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02452

Experiment: lib only

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_02451 and OHPLBJKB_02452 are separated by 73 nucleotidesOHPLBJKB_02452 and OHPLBJKB_02453 are separated by 49 nucleotides OHPLBJKB_02451: OHPLBJKB_02451 - putative NTE family protein, at 2,564,236 to 2,565,180 _02451 OHPLBJKB_02452: OHPLBJKB_02452 - hypothetical protein, at 2,565,254 to 2,565,712 _02452 OHPLBJKB_02453: OHPLBJKB_02453 - Formyltetrahydrofolate deformylase, at 2,565,762 to 2,566,604 _02453 Position (kb) 2565 2566Strain fitness (log2 ratio) -2 -1 0 1 2at 2564.337 kb on + strand, within OHPLBJKB_02451at 2564.337 kb on + strand, within OHPLBJKB_02451at 2564.341 kb on + strand, within OHPLBJKB_02451at 2564.440 kb on - strand, within OHPLBJKB_02451at 2564.483 kb on - strand, within OHPLBJKB_02451at 2564.483 kb on - strand, within OHPLBJKB_02451at 2564.559 kb on + strand, within OHPLBJKB_02451at 2564.560 kb on - strand, within OHPLBJKB_02451at 2564.622 kb on + strand, within OHPLBJKB_02451at 2564.652 kb on + strand, within OHPLBJKB_02451at 2564.697 kb on + strand, within OHPLBJKB_02451at 2564.697 kb on + strand, within OHPLBJKB_02451at 2564.698 kb on - strand, within OHPLBJKB_02451at 2564.745 kb on + strand, within OHPLBJKB_02451at 2564.776 kb on + strand, within OHPLBJKB_02451at 2564.777 kb on - strand, within OHPLBJKB_02451at 2564.777 kb on - strand, within OHPLBJKB_02451at 2564.854 kb on + strand, within OHPLBJKB_02451at 2564.855 kb on - strand, within OHPLBJKB_02451at 2565.070 kb on - strand, within OHPLBJKB_02451at 2565.202 kb on + strandat 2565.202 kb on + strandat 2565.202 kb on + strandat 2565.202 kb on + strandat 2565.203 kb on - strandat 2565.203 kb on - strandat 2565.203 kb on - strandat 2565.203 kb on - strandat 2565.249 kb on + strandat 2565.249 kb on + strandat 2565.249 kb on + strandat 2565.277 kb on + strandat 2565.291 kb on - strandat 2565.292 kb on + strandat 2565.292 kb on + strandat 2565.292 kb on + strandat 2565.292 kb on + strandat 2565.297 kb on + strandat 2565.297 kb on + strandat 2565.297 kb on + strandat 2565.297 kb on + strandat 2565.297 kb on + strandat 2565.297 kb on + strandat 2565.297 kb on + strandat 2565.298 kb on - strandat 2565.298 kb on - strandat 2565.298 kb on - strandat 2565.298 kb on - strandat 2565.311 kb on + strand, within OHPLBJKB_02452at 2565.312 kb on - strand, within OHPLBJKB_02452at 2565.312 kb on - strand, within OHPLBJKB_02452at 2565.366 kb on - strand, within OHPLBJKB_02452at 2565.400 kb on - strand, within OHPLBJKB_02452at 2565.400 kb on - strand, within OHPLBJKB_02452at 2565.470 kb on - strand, within OHPLBJKB_02452at 2565.492 kb on + strand, within OHPLBJKB_02452at 2565.579 kb on + strand, within OHPLBJKB_02452at 2565.620 kb on + strand, within OHPLBJKB_02452at 2565.620 kb on + strand, within OHPLBJKB_02452at 2565.621 kb on - strand, within OHPLBJKB_02452at 2565.623 kb on + strand, within OHPLBJKB_02452at 2565.623 kb on + strand, within OHPLBJKB_02452at 2565.624 kb on - strand, within OHPLBJKB_02452at 2565.624 kb on - strand, within OHPLBJKB_02452at 2565.710 kb on + strandat 2565.731 kb on - strandat 2565.779 kb on + strandat 2565.794 kb on + strandat 2565.795 kb on - strandat 2565.795 kb on - strandat 2565.827 kb on + strandat 2565.827 kb on + strandat 2565.827 kb on + strandat 2565.828 kb on - strandat 2565.828 kb on - strandat 2565.828 kb on - strandat 2565.828 kb on - strandat 2565.828 kb on - strandat 2565.830 kb on + strandat 2565.836 kb on + strandat 2565.837 kb on - strandat 2565.861 kb on - strand, within OHPLBJKB_02453at 2565.865 kb on + strand, within OHPLBJKB_02453at 2565.908 kb on + strand, within OHPLBJKB_02453at 2565.935 kb on + strand, within OHPLBJKB_02453at 2566.081 kb on - strand, within OHPLBJKB_02453at 2566.113 kb on - strand, within OHPLBJKB_02453at 2566.118 kb on + strand, within OHPLBJKB_02453at 2566.128 kb on - strand, within OHPLBJKB_02453at 2566.132 kb on + strand, within OHPLBJKB_02453at 2566.132 kb on + strand, within OHPLBJKB_02453at 2566.132 kb on + strand, within OHPLBJKB_02453at 2566.133 kb on - strand, within OHPLBJKB_02453at 2566.133 kb on - strand, within OHPLBJKB_02453at 2566.236 kb on + strand, within OHPLBJKB_02453at 2566.266 kb on + strand, within OHPLBJKB_02453at 2566.266 kb on + strand, within OHPLBJKB_02453at 2566.266 kb on + strand, within OHPLBJKB_02453at 2566.266 kb on + strand, within OHPLBJKB_02453at 2566.267 kb on - strand, within OHPLBJKB_02453at 2566.267 kb on - strand, within OHPLBJKB_02453at 2566.267 kb on - strand, within OHPLBJKB_02453at 2566.269 kb on - strand, within OHPLBJKB_02453at 2566.269 kb on - strand, within OHPLBJKB_02453at 2566.269 kb on - strand, within OHPLBJKB_02453at 2566.322 kb on + strand, within OHPLBJKB_02453at 2566.322 kb on + strand, within OHPLBJKB_02453at 2566.323 kb on - strand, within OHPLBJKB_02453at 2566.377 kb on + strand, within OHPLBJKB_02453at 2566.377 kb on + strand, within OHPLBJKB_02453at 2566.378 kb on - strand, within OHPLBJKB_02453at 2566.416 kb on + strand, within OHPLBJKB_02453at 2566.416 kb on + strand, within OHPLBJKB_02453at 2566.417 kb on - strand, within OHPLBJKB_02453at 2566.417 kb on - strand, within OHPLBJKB_02453at 2566.417 kb on - strand, within OHPLBJKB_02453at 2566.478 kb on + strand, within OHPLBJKB_02453at 2566.479 kb on - strand, within OHPLBJKB_02453at 2566.482 kb on + strand, within OHPLBJKB_02453at 2566.482 kb on + strand, within OHPLBJKB_02453at 2566.482 kb on + strand, within OHPLBJKB_02453at 2566.483 kb on - strand, within OHPLBJKB_02453at 2566.483 kb on - strand, within OHPLBJKB_02453at 2566.483 kb on - strand, within OHPLBJKB_02453at 2566.483 kb on - strand, within OHPLBJKB_02453at 2566.483 kb on - strand, within OHPLBJKB_02453at 2566.483 kb on - strand, within OHPLBJKB_02453at 2566.497 kb on - strand, within OHPLBJKB_02453at 2566.497 kb on - strand, within OHPLBJKB_02453at 2566.534 kb on + strandat 2566.535 kb on - strandat 2566.546 kb on + strandat 2566.548 kb on + strandat 2566.548 kb on + strandat 2566.549 kb on - strandat 2566.556 kb on - strandat 2566.653 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction lib only
remove
2,564,337 + OHPLBJKB_02451 0.11 -2.0
2,564,337 + OHPLBJKB_02451 0.11 -0.4
2,564,341 + OHPLBJKB_02451 0.11 -1.4
2,564,440 - OHPLBJKB_02451 0.22 -0.9
2,564,483 - OHPLBJKB_02451 0.26 +0.7
2,564,483 - OHPLBJKB_02451 0.26 +0.2
2,564,559 + OHPLBJKB_02451 0.34 +0.3
2,564,560 - OHPLBJKB_02451 0.34 +0.1
2,564,622 + OHPLBJKB_02451 0.41 -1.3
2,564,652 + OHPLBJKB_02451 0.44 +0.9
2,564,697 + OHPLBJKB_02451 0.49 +0.0
2,564,697 + OHPLBJKB_02451 0.49 -0.1
2,564,698 - OHPLBJKB_02451 0.49 +0.1
2,564,745 + OHPLBJKB_02451 0.54 -0.6
2,564,776 + OHPLBJKB_02451 0.57 -0.1
2,564,777 - OHPLBJKB_02451 0.57 -0.4
2,564,777 - OHPLBJKB_02451 0.57 +0.1
2,564,854 + OHPLBJKB_02451 0.65 -0.2
2,564,855 - OHPLBJKB_02451 0.66 +0.4
2,565,070 - OHPLBJKB_02451 0.88 +1.4
2,565,202 + +0.2
2,565,202 + -0.3
2,565,202 + +0.3
2,565,202 + +0.2
2,565,203 - -0.5
2,565,203 - +0.5
2,565,203 - +0.5
2,565,203 - -0.1
2,565,249 + -0.2
2,565,249 + +0.2
2,565,249 + +0.0
2,565,277 + -1.3
2,565,291 - +0.5
2,565,292 + -1.6
2,565,292 + -0.4
2,565,292 + -1.0
2,565,292 + +0.6
2,565,297 + -0.4
2,565,297 + -0.2
2,565,297 + -0.1
2,565,297 + +0.4
2,565,297 + -1.6
2,565,297 + +0.1
2,565,297 + +0.1
2,565,298 - -0.4
2,565,298 - -0.5
2,565,298 - +1.0
2,565,298 - -0.1
2,565,311 + OHPLBJKB_02452 0.12 +0.3
2,565,312 - OHPLBJKB_02452 0.13 -0.7
2,565,312 - OHPLBJKB_02452 0.13 -0.2
2,565,366 - OHPLBJKB_02452 0.24 +0.0
2,565,400 - OHPLBJKB_02452 0.32 +0.3
2,565,400 - OHPLBJKB_02452 0.32 +0.3
2,565,470 - OHPLBJKB_02452 0.47 -0.6
2,565,492 + OHPLBJKB_02452 0.52 +0.5
2,565,579 + OHPLBJKB_02452 0.71 -0.9
2,565,620 + OHPLBJKB_02452 0.80 +0.4
2,565,620 + OHPLBJKB_02452 0.80 +0.6
2,565,621 - OHPLBJKB_02452 0.80 +0.6
2,565,623 + OHPLBJKB_02452 0.80 +0.6
2,565,623 + OHPLBJKB_02452 0.80 -0.1
2,565,624 - OHPLBJKB_02452 0.81 +0.6
2,565,624 - OHPLBJKB_02452 0.81 -0.8
2,565,710 + +0.5
2,565,731 - -1.5
2,565,779 + +0.3
2,565,794 + -1.6
2,565,795 - +0.7
2,565,795 - +0.4
2,565,827 + +1.0
2,565,827 + +0.3
2,565,827 + +0.3
2,565,828 - +0.1
2,565,828 - -0.9
2,565,828 - -0.1
2,565,828 - -0.6
2,565,828 - -1.1
2,565,830 + -0.0
2,565,836 + +1.2
2,565,837 - -0.2
2,565,861 - OHPLBJKB_02453 0.12 -0.3
2,565,865 + OHPLBJKB_02453 0.12 -1.0
2,565,908 + OHPLBJKB_02453 0.17 -0.2
2,565,935 + OHPLBJKB_02453 0.21 -0.3
2,566,081 - OHPLBJKB_02453 0.38 +1.6
2,566,113 - OHPLBJKB_02453 0.42 +1.4
2,566,118 + OHPLBJKB_02453 0.42 -0.7
2,566,128 - OHPLBJKB_02453 0.43 -0.9
2,566,132 + OHPLBJKB_02453 0.44 +1.1
2,566,132 + OHPLBJKB_02453 0.44 +0.2
2,566,132 + OHPLBJKB_02453 0.44 +0.2
2,566,133 - OHPLBJKB_02453 0.44 -0.3
2,566,133 - OHPLBJKB_02453 0.44 -0.8
2,566,236 + OHPLBJKB_02453 0.56 -0.0
2,566,266 + OHPLBJKB_02453 0.60 -0.2
2,566,266 + OHPLBJKB_02453 0.60 +0.1
2,566,266 + OHPLBJKB_02453 0.60 -0.6
2,566,266 + OHPLBJKB_02453 0.60 +0.1
2,566,267 - OHPLBJKB_02453 0.60 -1.1
2,566,267 - OHPLBJKB_02453 0.60 -0.4
2,566,267 - OHPLBJKB_02453 0.60 +0.4
2,566,269 - OHPLBJKB_02453 0.60 +0.4
2,566,269 - OHPLBJKB_02453 0.60 -0.7
2,566,269 - OHPLBJKB_02453 0.60 -1.0
2,566,322 + OHPLBJKB_02453 0.66 +0.7
2,566,322 + OHPLBJKB_02453 0.66 -1.3
2,566,323 - OHPLBJKB_02453 0.67 +0.8
2,566,377 + OHPLBJKB_02453 0.73 -0.2
2,566,377 + OHPLBJKB_02453 0.73 +0.0
2,566,378 - OHPLBJKB_02453 0.73 +0.1
2,566,416 + OHPLBJKB_02453 0.78 +2.3
2,566,416 + OHPLBJKB_02453 0.78 +1.1
2,566,417 - OHPLBJKB_02453 0.78 +1.3
2,566,417 - OHPLBJKB_02453 0.78 +0.5
2,566,417 - OHPLBJKB_02453 0.78 -0.0
2,566,478 + OHPLBJKB_02453 0.85 -0.9
2,566,479 - OHPLBJKB_02453 0.85 -0.9
2,566,482 + OHPLBJKB_02453 0.85 -0.7
2,566,482 + OHPLBJKB_02453 0.85 +0.7
2,566,482 + OHPLBJKB_02453 0.85 +0.2
2,566,483 - OHPLBJKB_02453 0.86 +1.6
2,566,483 - OHPLBJKB_02453 0.86 +0.2
2,566,483 - OHPLBJKB_02453 0.86 -0.4
2,566,483 - OHPLBJKB_02453 0.86 +0.6
2,566,483 - OHPLBJKB_02453 0.86 -0.4
2,566,483 - OHPLBJKB_02453 0.86 -0.1
2,566,497 - OHPLBJKB_02453 0.87 +1.3
2,566,497 - OHPLBJKB_02453 0.87 +0.1
2,566,534 + -2.3
2,566,535 - +0.3
2,566,546 + -0.1
2,566,548 + -0.5
2,566,548 + +0.6
2,566,549 - -0.4
2,566,556 - +0.5
2,566,653 + +0.2

Or see this region's nucleotide sequence