Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00754

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00753 and OHPLBJKB_00754 are separated by 64 nucleotidesOHPLBJKB_00754 and OHPLBJKB_00755 are separated by 27 nucleotides OHPLBJKB_00753: OHPLBJKB_00753 - Membrane-bound lytic murein transglycosylase C, at 776,471 to 777,550 _00753 OHPLBJKB_00754: OHPLBJKB_00754 - putative Fe(2+)-trafficking protein, at 777,615 to 777,890 _00754 OHPLBJKB_00755: OHPLBJKB_00755 - Adenine DNA glycosylase, at 777,918 to 778,970 _00755 Position (kb) 777 778Strain fitness (log2 ratio) -2 -1 0 1at 776.653 kb on + strand, within OHPLBJKB_00753at 776.709 kb on + strand, within OHPLBJKB_00753at 776.710 kb on - strand, within OHPLBJKB_00753at 776.733 kb on + strand, within OHPLBJKB_00753at 776.753 kb on - strand, within OHPLBJKB_00753at 776.833 kb on + strand, within OHPLBJKB_00753at 776.833 kb on + strand, within OHPLBJKB_00753at 776.833 kb on + strand, within OHPLBJKB_00753at 776.833 kb on + strand, within OHPLBJKB_00753at 776.833 kb on + strand, within OHPLBJKB_00753at 776.833 kb on + strand, within OHPLBJKB_00753at 776.834 kb on - strand, within OHPLBJKB_00753at 776.834 kb on - strand, within OHPLBJKB_00753at 776.834 kb on - strand, within OHPLBJKB_00753at 776.840 kb on + strand, within OHPLBJKB_00753at 776.841 kb on - strand, within OHPLBJKB_00753at 776.883 kb on + strand, within OHPLBJKB_00753at 776.911 kb on + strand, within OHPLBJKB_00753at 776.911 kb on + strand, within OHPLBJKB_00753at 776.911 kb on + strand, within OHPLBJKB_00753at 776.912 kb on - strand, within OHPLBJKB_00753at 776.912 kb on - strand, within OHPLBJKB_00753at 776.944 kb on - strand, within OHPLBJKB_00753at 776.944 kb on - strand, within OHPLBJKB_00753at 776.976 kb on + strand, within OHPLBJKB_00753at 776.976 kb on + strand, within OHPLBJKB_00753at 777.016 kb on + strand, within OHPLBJKB_00753at 777.030 kb on + strand, within OHPLBJKB_00753at 777.030 kb on + strand, within OHPLBJKB_00753at 777.030 kb on + strand, within OHPLBJKB_00753at 777.038 kb on - strand, within OHPLBJKB_00753at 777.081 kb on + strand, within OHPLBJKB_00753at 777.081 kb on + strand, within OHPLBJKB_00753at 777.176 kb on - strand, within OHPLBJKB_00753at 777.178 kb on + strand, within OHPLBJKB_00753at 777.195 kb on + strand, within OHPLBJKB_00753at 777.196 kb on - strand, within OHPLBJKB_00753at 777.241 kb on + strand, within OHPLBJKB_00753at 777.295 kb on + strand, within OHPLBJKB_00753at 777.295 kb on + strand, within OHPLBJKB_00753at 777.296 kb on - strand, within OHPLBJKB_00753at 777.296 kb on - strand, within OHPLBJKB_00753at 777.349 kb on - strand, within OHPLBJKB_00753at 777.349 kb on - strand, within OHPLBJKB_00753at 777.349 kb on - strand, within OHPLBJKB_00753at 777.358 kb on - strand, within OHPLBJKB_00753at 777.364 kb on + strand, within OHPLBJKB_00753at 777.409 kb on + strand, within OHPLBJKB_00753at 777.410 kb on - strand, within OHPLBJKB_00753at 777.410 kb on - strand, within OHPLBJKB_00753at 777.410 kb on - strand, within OHPLBJKB_00753at 777.451 kb on + strandat 777.451 kb on + strandat 777.474 kb on + strandat 777.474 kb on + strandat 777.474 kb on + strandat 777.474 kb on + strandat 777.474 kb on + strandat 777.474 kb on + strandat 777.474 kb on + strandat 777.474 kb on + strandat 777.475 kb on - strandat 777.475 kb on - strandat 777.475 kb on - strandat 777.475 kb on - strandat 777.475 kb on - strandat 777.475 kb on - strandat 777.475 kb on - strandat 777.475 kb on - strandat 777.475 kb on - strandat 777.475 kb on - strandat 777.623 kb on + strandat 777.635 kb on + strandat 777.636 kb on - strandat 777.637 kb on + strandat 777.660 kb on - strand, within OHPLBJKB_00754at 777.660 kb on - strand, within OHPLBJKB_00754at 777.799 kb on + strand, within OHPLBJKB_00754at 777.799 kb on + strand, within OHPLBJKB_00754at 777.799 kb on + strand, within OHPLBJKB_00754at 777.799 kb on + strand, within OHPLBJKB_00754at 777.799 kb on + strand, within OHPLBJKB_00754at 777.799 kb on + strand, within OHPLBJKB_00754at 777.799 kb on + strand, within OHPLBJKB_00754at 777.799 kb on + strand, within OHPLBJKB_00754at 777.799 kb on + strand, within OHPLBJKB_00754at 777.800 kb on - strand, within OHPLBJKB_00754at 777.800 kb on - strand, within OHPLBJKB_00754at 777.939 kb on + strandat 777.939 kb on + strandat 777.949 kb on - strandat 778.001 kb on + strandat 778.001 kb on + strandat 778.002 kb on - strandat 778.002 kb on - strandat 778.002 kb on - strandat 778.061 kb on + strand, within OHPLBJKB_00755at 778.062 kb on - strand, within OHPLBJKB_00755at 778.070 kb on + strand, within OHPLBJKB_00755at 778.071 kb on - strand, within OHPLBJKB_00755at 778.071 kb on - strand, within OHPLBJKB_00755at 778.094 kb on + strand, within OHPLBJKB_00755at 778.094 kb on + strand, within OHPLBJKB_00755at 778.094 kb on + strand, within OHPLBJKB_00755at 778.094 kb on + strand, within OHPLBJKB_00755at 778.198 kb on - strand, within OHPLBJKB_00755at 778.198 kb on - strand, within OHPLBJKB_00755at 778.239 kb on + strand, within OHPLBJKB_00755at 778.239 kb on + strand, within OHPLBJKB_00755at 778.239 kb on + strand, within OHPLBJKB_00755at 778.239 kb on + strand, within OHPLBJKB_00755at 778.239 kb on + strand, within OHPLBJKB_00755at 778.239 kb on + strand, within OHPLBJKB_00755at 778.239 kb on + strand, within OHPLBJKB_00755at 778.239 kb on + strand, within OHPLBJKB_00755at 778.240 kb on - strand, within OHPLBJKB_00755at 778.240 kb on - strand, within OHPLBJKB_00755at 778.257 kb on + strand, within OHPLBJKB_00755at 778.257 kb on + strand, within OHPLBJKB_00755at 778.258 kb on - strand, within OHPLBJKB_00755at 778.258 kb on - strand, within OHPLBJKB_00755at 778.258 kb on - strand, within OHPLBJKB_00755at 778.261 kb on - strand, within OHPLBJKB_00755at 778.328 kb on + strand, within OHPLBJKB_00755at 778.329 kb on - strand, within OHPLBJKB_00755at 778.329 kb on - strand, within OHPLBJKB_00755at 778.329 kb on - strand, within OHPLBJKB_00755at 778.346 kb on + strand, within OHPLBJKB_00755at 778.346 kb on + strand, within OHPLBJKB_00755at 778.346 kb on + strand, within OHPLBJKB_00755at 778.347 kb on - strand, within OHPLBJKB_00755at 778.347 kb on - strand, within OHPLBJKB_00755at 778.347 kb on - strand, within OHPLBJKB_00755at 778.431 kb on - strand, within OHPLBJKB_00755at 778.479 kb on + strand, within OHPLBJKB_00755at 778.479 kb on + strand, within OHPLBJKB_00755at 778.485 kb on - strand, within OHPLBJKB_00755at 778.519 kb on - strand, within OHPLBJKB_00755at 778.525 kb on + strand, within OHPLBJKB_00755at 778.526 kb on - strand, within OHPLBJKB_00755at 778.674 kb on + strand, within OHPLBJKB_00755at 778.675 kb on - strand, within OHPLBJKB_00755at 778.723 kb on + strand, within OHPLBJKB_00755at 778.726 kb on + strand, within OHPLBJKB_00755at 778.726 kb on + strand, within OHPLBJKB_00755at 778.727 kb on - strand, within OHPLBJKB_00755at 778.872 kb on + strandat 778.872 kb on + strandat 778.872 kb on + strandat 778.872 kb on + strandat 778.872 kb on + strandat 778.872 kb on + strandat 778.872 kb on + strandat 778.872 kb on + strandat 778.873 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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776,653 + OHPLBJKB_00753 0.17 -0.0
776,709 + OHPLBJKB_00753 0.22 -0.7
776,710 - OHPLBJKB_00753 0.22 -0.2
776,733 + OHPLBJKB_00753 0.24 -0.2
776,753 - OHPLBJKB_00753 0.26 +0.5
776,833 + OHPLBJKB_00753 0.34 +0.7
776,833 + OHPLBJKB_00753 0.34 -0.6
776,833 + OHPLBJKB_00753 0.34 -1.6
776,833 + OHPLBJKB_00753 0.34 +1.0
776,833 + OHPLBJKB_00753 0.34 +1.3
776,833 + OHPLBJKB_00753 0.34 -1.0
776,834 - OHPLBJKB_00753 0.34 +0.6
776,834 - OHPLBJKB_00753 0.34 -0.1
776,834 - OHPLBJKB_00753 0.34 -0.1
776,840 + OHPLBJKB_00753 0.34 +0.3
776,841 - OHPLBJKB_00753 0.34 -0.1
776,883 + OHPLBJKB_00753 0.38 -0.4
776,911 + OHPLBJKB_00753 0.41 -0.2
776,911 + OHPLBJKB_00753 0.41 +0.0
776,911 + OHPLBJKB_00753 0.41 -0.2
776,912 - OHPLBJKB_00753 0.41 +0.0
776,912 - OHPLBJKB_00753 0.41 +0.3
776,944 - OHPLBJKB_00753 0.44 -0.1
776,944 - OHPLBJKB_00753 0.44 -0.6
776,976 + OHPLBJKB_00753 0.47 +0.1
776,976 + OHPLBJKB_00753 0.47 +0.2
777,016 + OHPLBJKB_00753 0.50 -1.6
777,030 + OHPLBJKB_00753 0.52 -0.2
777,030 + OHPLBJKB_00753 0.52 -1.1
777,030 + OHPLBJKB_00753 0.52 -0.5
777,038 - OHPLBJKB_00753 0.53 -0.3
777,081 + OHPLBJKB_00753 0.56 +0.8
777,081 + OHPLBJKB_00753 0.56 +1.3
777,176 - OHPLBJKB_00753 0.65 -1.0
777,178 + OHPLBJKB_00753 0.65 -0.5
777,195 + OHPLBJKB_00753 0.67 -0.4
777,196 - OHPLBJKB_00753 0.67 -0.2
777,241 + OHPLBJKB_00753 0.71 -0.0
777,295 + OHPLBJKB_00753 0.76 +0.3
777,295 + OHPLBJKB_00753 0.76 +1.0
777,296 - OHPLBJKB_00753 0.76 +1.1
777,296 - OHPLBJKB_00753 0.76 -1.2
777,349 - OHPLBJKB_00753 0.81 +0.7
777,349 - OHPLBJKB_00753 0.81 +0.2
777,349 - OHPLBJKB_00753 0.81 -1.0
777,358 - OHPLBJKB_00753 0.82 -0.1
777,364 + OHPLBJKB_00753 0.83 -1.2
777,409 + OHPLBJKB_00753 0.87 -1.1
777,410 - OHPLBJKB_00753 0.87 +0.6
777,410 - OHPLBJKB_00753 0.87 -1.2
777,410 - OHPLBJKB_00753 0.87 -1.3
777,451 + -0.7
777,451 + +0.4
777,474 + -0.8
777,474 + +1.0
777,474 + +0.2
777,474 + +0.4
777,474 + +0.7
777,474 + -0.4
777,474 + -0.1
777,474 + -0.4
777,475 - +0.5
777,475 - -0.3
777,475 - -0.7
777,475 - -0.7
777,475 - +0.0
777,475 - -1.4
777,475 - +0.2
777,475 - +0.1
777,475 - -1.2
777,475 - -0.2
777,623 + +1.1
777,635 + +0.1
777,636 - -0.1
777,637 + +0.4
777,660 - OHPLBJKB_00754 0.16 -0.9
777,660 - OHPLBJKB_00754 0.16 +0.3
777,799 + OHPLBJKB_00754 0.67 -0.2
777,799 + OHPLBJKB_00754 0.67 -0.1
777,799 + OHPLBJKB_00754 0.67 +0.0
777,799 + OHPLBJKB_00754 0.67 -0.7
777,799 + OHPLBJKB_00754 0.67 -0.8
777,799 + OHPLBJKB_00754 0.67 -0.9
777,799 + OHPLBJKB_00754 0.67 -1.1
777,799 + OHPLBJKB_00754 0.67 +0.2
777,799 + OHPLBJKB_00754 0.67 -1.0
777,800 - OHPLBJKB_00754 0.67 +0.3
777,800 - OHPLBJKB_00754 0.67 -0.2
777,939 + +0.4
777,939 + -0.3
777,949 - -0.8
778,001 + -0.4
778,001 + -0.7
778,002 - +1.4
778,002 - -1.2
778,002 - -0.0
778,061 + OHPLBJKB_00755 0.14 +0.4
778,062 - OHPLBJKB_00755 0.14 +0.6
778,070 + OHPLBJKB_00755 0.14 -0.6
778,071 - OHPLBJKB_00755 0.15 +0.7
778,071 - OHPLBJKB_00755 0.15 +0.0
778,094 + OHPLBJKB_00755 0.17 -1.6
778,094 + OHPLBJKB_00755 0.17 -0.8
778,094 + OHPLBJKB_00755 0.17 -1.0
778,094 + OHPLBJKB_00755 0.17 -0.5
778,198 - OHPLBJKB_00755 0.27 +0.9
778,198 - OHPLBJKB_00755 0.27 -0.1
778,239 + OHPLBJKB_00755 0.30 +1.1
778,239 + OHPLBJKB_00755 0.30 -0.3
778,239 + OHPLBJKB_00755 0.30 -0.4
778,239 + OHPLBJKB_00755 0.30 -0.5
778,239 + OHPLBJKB_00755 0.30 -0.2
778,239 + OHPLBJKB_00755 0.30 +0.4
778,239 + OHPLBJKB_00755 0.30 -0.3
778,239 + OHPLBJKB_00755 0.30 +0.7
778,240 - OHPLBJKB_00755 0.31 +0.6
778,240 - OHPLBJKB_00755 0.31 +0.7
778,257 + OHPLBJKB_00755 0.32 +0.8
778,257 + OHPLBJKB_00755 0.32 +0.4
778,258 - OHPLBJKB_00755 0.32 +0.1
778,258 - OHPLBJKB_00755 0.32 +0.3
778,258 - OHPLBJKB_00755 0.32 -0.1
778,261 - OHPLBJKB_00755 0.33 -0.0
778,328 + OHPLBJKB_00755 0.39 -0.2
778,329 - OHPLBJKB_00755 0.39 +1.0
778,329 - OHPLBJKB_00755 0.39 +0.2
778,329 - OHPLBJKB_00755 0.39 +0.5
778,346 + OHPLBJKB_00755 0.41 +0.3
778,346 + OHPLBJKB_00755 0.41 -0.9
778,346 + OHPLBJKB_00755 0.41 -0.4
778,347 - OHPLBJKB_00755 0.41 -0.5
778,347 - OHPLBJKB_00755 0.41 +0.7
778,347 - OHPLBJKB_00755 0.41 -0.3
778,431 - OHPLBJKB_00755 0.49 -0.3
778,479 + OHPLBJKB_00755 0.53 +0.1
778,479 + OHPLBJKB_00755 0.53 -0.9
778,485 - OHPLBJKB_00755 0.54 -0.5
778,519 - OHPLBJKB_00755 0.57 -0.0
778,525 + OHPLBJKB_00755 0.58 +0.1
778,526 - OHPLBJKB_00755 0.58 +0.4
778,674 + OHPLBJKB_00755 0.72 +0.2
778,675 - OHPLBJKB_00755 0.72 +0.1
778,723 + OHPLBJKB_00755 0.76 +1.1
778,726 + OHPLBJKB_00755 0.77 +0.4
778,726 + OHPLBJKB_00755 0.77 +0.2
778,727 - OHPLBJKB_00755 0.77 +0.9
778,872 + -1.1
778,872 + +0.5
778,872 + -1.8
778,872 + -1.0
778,872 + -1.3
778,872 + -0.2
778,872 + +0.3
778,872 + -0.9
778,873 - +0.4

Or see this region's nucleotide sequence