Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02980

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02976 and OHPLBJKB_02977 overlap by 4 nucleotidesOHPLBJKB_02977 and OHPLBJKB_02978 are separated by 149 nucleotidesOHPLBJKB_02978 and OHPLBJKB_02979 overlap by 1 nucleotidesOHPLBJKB_02979 and OHPLBJKB_02980 are separated by 14 nucleotidesOHPLBJKB_02980 and OHPLBJKB_02981 are separated by 15 nucleotides OHPLBJKB_02976: OHPLBJKB_02976 - Protein TolQ, at 3,099,940 to 3,100,632 _02976 OHPLBJKB_02977: OHPLBJKB_02977 - Acyl-CoA thioester hydrolase YbgC, at 3,100,629 to 3,101,033 _02977 OHPLBJKB_02978: OHPLBJKB_02978 - hypothetical protein, at 3,101,183 to 3,101,476 _02978 OHPLBJKB_02979: OHPLBJKB_02979 - Cytochrome bd-I ubiquinol oxidase subunit X, at 3,101,476 to 3,101,589 _02979 OHPLBJKB_02980: OHPLBJKB_02980 - Cytochrome bd-I ubiquinol oxidase subunit 2, at 3,101,604 to 3,102,743 _02980 OHPLBJKB_02981: OHPLBJKB_02981 - Cytochrome bd-I ubiquinol oxidase subunit 1, at 3,102,759 to 3,104,327 _02981 Position (kb) 3101 3102 3103Strain fitness (log2 ratio) -1 0 1at 3100.652 kb on + strandat 3100.653 kb on - strandat 3100.730 kb on + strand, within OHPLBJKB_02977at 3100.731 kb on - strand, within OHPLBJKB_02977at 3100.748 kb on + strand, within OHPLBJKB_02977at 3100.749 kb on - strand, within OHPLBJKB_02977at 3100.749 kb on - strand, within OHPLBJKB_02977at 3100.788 kb on + strand, within OHPLBJKB_02977at 3100.788 kb on + strand, within OHPLBJKB_02977at 3100.811 kb on + strand, within OHPLBJKB_02977at 3100.834 kb on + strand, within OHPLBJKB_02977at 3100.854 kb on - strand, within OHPLBJKB_02977at 3100.854 kb on - strand, within OHPLBJKB_02977at 3100.854 kb on - strand, within OHPLBJKB_02977at 3100.951 kb on + strand, within OHPLBJKB_02977at 3100.952 kb on - strand, within OHPLBJKB_02977at 3100.952 kb on - strand, within OHPLBJKB_02977at 3100.994 kb on - strandat 3100.994 kb on - strandat 3100.994 kb on - strandat 3100.996 kb on + strandat 3101.028 kb on - strandat 3101.036 kb on + strandat 3101.036 kb on + strandat 3101.036 kb on + strandat 3101.037 kb on - strandat 3101.037 kb on - strandat 3101.037 kb on - strandat 3101.037 kb on - strandat 3101.081 kb on - strandat 3101.083 kb on + strandat 3101.083 kb on + strandat 3101.083 kb on + strandat 3101.084 kb on - strandat 3101.085 kb on + strandat 3101.122 kb on - strandat 3101.384 kb on - strand, within OHPLBJKB_02978at 3101.384 kb on - strand, within OHPLBJKB_02978at 3101.384 kb on - strand, within OHPLBJKB_02978at 3101.451 kb on + strandat 3101.451 kb on + strandat 3101.602 kb on - strandat 3101.602 kb on - strandat 3101.602 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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3,100,652 + -0.2
3,100,653 - +0.7
3,100,730 + OHPLBJKB_02977 0.25 +0.5
3,100,731 - OHPLBJKB_02977 0.25 +0.3
3,100,748 + OHPLBJKB_02977 0.29 -0.9
3,100,749 - OHPLBJKB_02977 0.30 +0.1
3,100,749 - OHPLBJKB_02977 0.30 -0.6
3,100,788 + OHPLBJKB_02977 0.39 -1.7
3,100,788 + OHPLBJKB_02977 0.39 +0.5
3,100,811 + OHPLBJKB_02977 0.45 -1.0
3,100,834 + OHPLBJKB_02977 0.51 -0.6
3,100,854 - OHPLBJKB_02977 0.56 -0.2
3,100,854 - OHPLBJKB_02977 0.56 -0.3
3,100,854 - OHPLBJKB_02977 0.56 -1.0
3,100,951 + OHPLBJKB_02977 0.80 +1.1
3,100,952 - OHPLBJKB_02977 0.80 -0.5
3,100,952 - OHPLBJKB_02977 0.80 -0.9
3,100,994 - -0.2
3,100,994 - -0.5
3,100,994 - +0.8
3,100,996 + -0.1
3,101,028 - -0.3
3,101,036 + -1.0
3,101,036 + -0.4
3,101,036 + -0.5
3,101,037 - +0.3
3,101,037 - +0.3
3,101,037 - +0.2
3,101,037 - +0.6
3,101,081 - -0.4
3,101,083 + -0.4
3,101,083 + -1.2
3,101,083 + +0.5
3,101,084 - -0.1
3,101,085 + -1.3
3,101,122 - +0.7
3,101,384 - OHPLBJKB_02978 0.68 -0.3
3,101,384 - OHPLBJKB_02978 0.68 -0.5
3,101,384 - OHPLBJKB_02978 0.68 -0.5
3,101,451 + +0.5
3,101,451 + -0.2
3,101,602 - -0.5
3,101,602 - +0.5
3,101,602 - +0.1

Or see this region's nucleotide sequence