Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02639

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02637 and OHPLBJKB_02638 overlap by 4 nucleotidesOHPLBJKB_02638 and OHPLBJKB_02639 are separated by 40 nucleotidesOHPLBJKB_02639 and OHPLBJKB_02640 are separated by 586 nucleotides OHPLBJKB_02637: OHPLBJKB_02637 - IS3 family transposase ISEc17, at 2,744,126 to 2,744,425 _02637 OHPLBJKB_02638: OHPLBJKB_02638 - IS3 family transposase IS3, at 2,744,422 to 2,745,288 _02638 OHPLBJKB_02639: OHPLBJKB_02639 - putative diguanylate cyclase DgcT, at 2,745,329 to 2,746,687 _02639 OHPLBJKB_02640: OHPLBJKB_02640 - Poly-beta-1,6-N-acetyl-D-glucosamine export protein, at 2,747,274 to 2,748,635 _02640 Position (kb) 2745 2746 2747Strain fitness (log2 ratio) -2 -1 0 1at 2745.303 kb on + strandat 2745.303 kb on + strandat 2745.373 kb on + strandat 2745.400 kb on - strandat 2745.423 kb on + strandat 2745.424 kb on - strandat 2745.440 kb on + strandat 2745.495 kb on - strand, within OHPLBJKB_02639at 2745.497 kb on - strand, within OHPLBJKB_02639at 2745.501 kb on + strand, within OHPLBJKB_02639at 2745.522 kb on - strand, within OHPLBJKB_02639at 2745.642 kb on - strand, within OHPLBJKB_02639at 2745.658 kb on + strand, within OHPLBJKB_02639at 2746.105 kb on - strand, within OHPLBJKB_02639at 2746.188 kb on - strand, within OHPLBJKB_02639at 2746.229 kb on + strand, within OHPLBJKB_02639at 2746.311 kb on - strand, within OHPLBJKB_02639at 2746.652 kb on + strandat 2746.661 kb on - strandat 2746.712 kb on + strandat 2746.733 kb on + strandat 2746.796 kb on - strandat 2746.833 kb on + strandat 2746.834 kb on - strandat 2746.834 kb on - strandat 2746.834 kb on - strandat 2746.864 kb on + strandat 2746.865 kb on - strandat 2746.865 kb on - strandat 2746.865 kb on - strandat 2746.870 kb on + strandat 2746.913 kb on - strandat 2747.009 kb on + strandat 2747.113 kb on + strandat 2747.256 kb on + strandat 2747.277 kb on + strandat 2747.278 kb on - strandat 2747.420 kb on + strand, within OHPLBJKB_02640at 2747.420 kb on + strand, within OHPLBJKB_02640at 2747.421 kb on - strand, within OHPLBJKB_02640at 2747.421 kb on - strand, within OHPLBJKB_02640at 2747.421 kb on - strand, within OHPLBJKB_02640at 2747.627 kb on + strand, within OHPLBJKB_02640at 2747.628 kb on - strand, within OHPLBJKB_02640at 2747.628 kb on - strand, within OHPLBJKB_02640

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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2,745,303 + +0.5
2,745,303 + -0.1
2,745,373 + -0.2
2,745,400 - +0.2
2,745,423 + +0.1
2,745,424 - -0.6
2,745,440 + -1.3
2,745,495 - OHPLBJKB_02639 0.12 -0.1
2,745,497 - OHPLBJKB_02639 0.12 +0.7
2,745,501 + OHPLBJKB_02639 0.13 +0.0
2,745,522 - OHPLBJKB_02639 0.14 +1.1
2,745,642 - OHPLBJKB_02639 0.23 +0.4
2,745,658 + OHPLBJKB_02639 0.24 -0.0
2,746,105 - OHPLBJKB_02639 0.57 -0.5
2,746,188 - OHPLBJKB_02639 0.63 +0.3
2,746,229 + OHPLBJKB_02639 0.66 -0.7
2,746,311 - OHPLBJKB_02639 0.72 +1.6
2,746,652 + -0.0
2,746,661 - +0.4
2,746,712 + +0.0
2,746,733 + +1.0
2,746,796 - +1.4
2,746,833 + -2.1
2,746,834 - +0.4
2,746,834 - +0.1
2,746,834 - -0.5
2,746,864 + -0.7
2,746,865 - -0.5
2,746,865 - +0.2
2,746,865 - +1.7
2,746,870 + +1.1
2,746,913 - -0.2
2,747,009 + +0.5
2,747,113 + -0.1
2,747,256 + -0.2
2,747,277 + +0.5
2,747,278 - +0.1
2,747,420 + OHPLBJKB_02640 0.11 -0.5
2,747,420 + OHPLBJKB_02640 0.11 -0.4
2,747,421 - OHPLBJKB_02640 0.11 +1.3
2,747,421 - OHPLBJKB_02640 0.11 +0.1
2,747,421 - OHPLBJKB_02640 0.11 -0.3
2,747,627 + OHPLBJKB_02640 0.26 -0.3
2,747,628 - OHPLBJKB_02640 0.26 +0.1
2,747,628 - OHPLBJKB_02640 0.26 +0.1

Or see this region's nucleotide sequence