Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02081

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02080 and OHPLBJKB_02081 overlap by 1 nucleotidesOHPLBJKB_02081 and OHPLBJKB_02082 are separated by 2 nucleotidesOHPLBJKB_02082 and OHPLBJKB_02083 are separated by 200 nucleotidesOHPLBJKB_02083 and OHPLBJKB_02084 are separated by 46 nucleotides OHPLBJKB_02080: OHPLBJKB_02080 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 2,156,558 to 2,158,570 _02080 OHPLBJKB_02081: OHPLBJKB_02081 - p-hydroxybenzoic acid efflux pump subunit AaeA, at 2,158,570 to 2,159,427 _02081 OHPLBJKB_02082: OHPLBJKB_02082 - hypothetical protein, at 2,159,430 to 2,159,666 _02082 OHPLBJKB_02083: OHPLBJKB_02083 - Transcriptional regulator SlyA, at 2,159,867 to 2,160,301 _02083 OHPLBJKB_02084: OHPLBJKB_02084 - Outer membrane lipoprotein SlyB, at 2,160,348 to 2,160,815 _02084 Position (kb) 2158 2159 2160Strain fitness (log2 ratio) -2 -1 0 1at 2157.579 kb on - strand, within OHPLBJKB_02080at 2157.579 kb on - strand, within OHPLBJKB_02080at 2157.579 kb on - strand, within OHPLBJKB_02080at 2157.589 kb on + strand, within OHPLBJKB_02080at 2157.590 kb on - strand, within OHPLBJKB_02080at 2157.685 kb on + strand, within OHPLBJKB_02080at 2157.699 kb on + strand, within OHPLBJKB_02080at 2157.790 kb on + strand, within OHPLBJKB_02080at 2157.790 kb on + strand, within OHPLBJKB_02080at 2157.790 kb on + strand, within OHPLBJKB_02080at 2157.790 kb on + strand, within OHPLBJKB_02080at 2157.790 kb on + strand, within OHPLBJKB_02080at 2157.791 kb on - strand, within OHPLBJKB_02080at 2157.791 kb on - strand, within OHPLBJKB_02080at 2157.791 kb on - strand, within OHPLBJKB_02080at 2157.791 kb on - strand, within OHPLBJKB_02080at 2157.824 kb on + strand, within OHPLBJKB_02080at 2157.824 kb on + strand, within OHPLBJKB_02080at 2157.824 kb on + strand, within OHPLBJKB_02080at 2157.825 kb on - strand, within OHPLBJKB_02080at 2157.825 kb on - strand, within OHPLBJKB_02080at 2157.825 kb on - strand, within OHPLBJKB_02080at 2157.876 kb on + strand, within OHPLBJKB_02080at 2157.899 kb on - strand, within OHPLBJKB_02080at 2157.921 kb on - strand, within OHPLBJKB_02080at 2158.002 kb on - strand, within OHPLBJKB_02080at 2158.058 kb on - strand, within OHPLBJKB_02080at 2158.058 kb on - strand, within OHPLBJKB_02080at 2158.153 kb on + strand, within OHPLBJKB_02080at 2158.154 kb on - strand, within OHPLBJKB_02080at 2158.156 kb on + strand, within OHPLBJKB_02080at 2158.157 kb on - strand, within OHPLBJKB_02080at 2158.157 kb on - strand, within OHPLBJKB_02080at 2158.249 kb on + strand, within OHPLBJKB_02080at 2158.281 kb on - strand, within OHPLBJKB_02080at 2158.306 kb on + strand, within OHPLBJKB_02080at 2158.307 kb on - strand, within OHPLBJKB_02080at 2158.379 kb on - strandat 2158.449 kb on - strandat 2158.452 kb on + strandat 2158.590 kb on + strandat 2158.686 kb on + strand, within OHPLBJKB_02081at 2158.687 kb on - strand, within OHPLBJKB_02081at 2158.687 kb on - strand, within OHPLBJKB_02081at 2158.790 kb on + strand, within OHPLBJKB_02081at 2158.791 kb on - strand, within OHPLBJKB_02081at 2158.797 kb on + strand, within OHPLBJKB_02081at 2158.932 kb on + strand, within OHPLBJKB_02081at 2158.933 kb on - strand, within OHPLBJKB_02081at 2159.122 kb on - strand, within OHPLBJKB_02081at 2159.248 kb on + strand, within OHPLBJKB_02081at 2159.249 kb on - strand, within OHPLBJKB_02081at 2159.251 kb on - strand, within OHPLBJKB_02081at 2159.265 kb on + strand, within OHPLBJKB_02081at 2159.265 kb on + strand, within OHPLBJKB_02081at 2159.266 kb on - strand, within OHPLBJKB_02081at 2159.289 kb on + strand, within OHPLBJKB_02081at 2159.290 kb on - strand, within OHPLBJKB_02081at 2159.342 kb on + strandat 2159.343 kb on - strandat 2159.343 kb on - strandat 2159.345 kb on + strandat 2159.346 kb on - strandat 2159.380 kb on + strandat 2159.409 kb on + strandat 2159.409 kb on + strandat 2159.427 kb on + strandat 2159.427 kb on + strandat 2159.428 kb on - strandat 2159.657 kb on + strandat 2159.691 kb on + strandat 2159.692 kb on - strandat 2159.693 kb on + strandat 2159.800 kb on + strandat 2159.800 kb on + strandat 2159.816 kb on + strandat 2159.817 kb on - strandat 2159.822 kb on - strandat 2159.952 kb on + strand, within OHPLBJKB_02083at 2159.971 kb on + strand, within OHPLBJKB_02083at 2159.976 kb on + strand, within OHPLBJKB_02083at 2159.976 kb on + strand, within OHPLBJKB_02083at 2160.133 kb on + strand, within OHPLBJKB_02083at 2160.184 kb on + strand, within OHPLBJKB_02083at 2160.248 kb on - strand, within OHPLBJKB_02083at 2160.275 kb on - strandat 2160.345 kb on + strandat 2160.345 kb on + strandat 2160.346 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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2,157,579 - OHPLBJKB_02080 0.51 -0.4
2,157,579 - OHPLBJKB_02080 0.51 -0.4
2,157,579 - OHPLBJKB_02080 0.51 +0.4
2,157,589 + OHPLBJKB_02080 0.51 -1.2
2,157,590 - OHPLBJKB_02080 0.51 -0.1
2,157,685 + OHPLBJKB_02080 0.56 -0.2
2,157,699 + OHPLBJKB_02080 0.57 +0.8
2,157,790 + OHPLBJKB_02080 0.61 -0.3
2,157,790 + OHPLBJKB_02080 0.61 -0.0
2,157,790 + OHPLBJKB_02080 0.61 +0.9
2,157,790 + OHPLBJKB_02080 0.61 +0.1
2,157,790 + OHPLBJKB_02080 0.61 -0.4
2,157,791 - OHPLBJKB_02080 0.61 -0.8
2,157,791 - OHPLBJKB_02080 0.61 -0.0
2,157,791 - OHPLBJKB_02080 0.61 +0.2
2,157,791 - OHPLBJKB_02080 0.61 -0.6
2,157,824 + OHPLBJKB_02080 0.63 -1.2
2,157,824 + OHPLBJKB_02080 0.63 -0.4
2,157,824 + OHPLBJKB_02080 0.63 -1.2
2,157,825 - OHPLBJKB_02080 0.63 +0.6
2,157,825 - OHPLBJKB_02080 0.63 -0.3
2,157,825 - OHPLBJKB_02080 0.63 +0.6
2,157,876 + OHPLBJKB_02080 0.65 -1.2
2,157,899 - OHPLBJKB_02080 0.67 -0.4
2,157,921 - OHPLBJKB_02080 0.68 +0.2
2,158,002 - OHPLBJKB_02080 0.72 +0.9
2,158,058 - OHPLBJKB_02080 0.75 +0.5
2,158,058 - OHPLBJKB_02080 0.75 -1.9
2,158,153 + OHPLBJKB_02080 0.79 +0.5
2,158,154 - OHPLBJKB_02080 0.79 -1.4
2,158,156 + OHPLBJKB_02080 0.79 -0.7
2,158,157 - OHPLBJKB_02080 0.79 -0.6
2,158,157 - OHPLBJKB_02080 0.79 -0.5
2,158,249 + OHPLBJKB_02080 0.84 -1.0
2,158,281 - OHPLBJKB_02080 0.86 +0.0
2,158,306 + OHPLBJKB_02080 0.87 +0.2
2,158,307 - OHPLBJKB_02080 0.87 +0.7
2,158,379 - +0.0
2,158,449 - -0.5
2,158,452 + +1.6
2,158,590 + +0.2
2,158,686 + OHPLBJKB_02081 0.14 +0.3
2,158,687 - OHPLBJKB_02081 0.14 +0.9
2,158,687 - OHPLBJKB_02081 0.14 -2.1
2,158,790 + OHPLBJKB_02081 0.26 +0.6
2,158,791 - OHPLBJKB_02081 0.26 -1.4
2,158,797 + OHPLBJKB_02081 0.26 +0.3
2,158,932 + OHPLBJKB_02081 0.42 +0.5
2,158,933 - OHPLBJKB_02081 0.42 +0.2
2,159,122 - OHPLBJKB_02081 0.64 +1.7
2,159,248 + OHPLBJKB_02081 0.79 -0.2
2,159,249 - OHPLBJKB_02081 0.79 -0.8
2,159,251 - OHPLBJKB_02081 0.79 +0.0
2,159,265 + OHPLBJKB_02081 0.81 +0.1
2,159,265 + OHPLBJKB_02081 0.81 -0.5
2,159,266 - OHPLBJKB_02081 0.81 -0.4
2,159,289 + OHPLBJKB_02081 0.84 -0.3
2,159,290 - OHPLBJKB_02081 0.84 -0.6
2,159,342 + +0.3
2,159,343 - +0.4
2,159,343 - -0.7
2,159,345 + +1.3
2,159,346 - +0.6
2,159,380 + -1.1
2,159,409 + +1.0
2,159,409 + +0.5
2,159,427 + +0.0
2,159,427 + +1.0
2,159,428 - -0.4
2,159,657 + +0.2
2,159,691 + +0.3
2,159,692 - +1.7
2,159,693 + +0.2
2,159,800 + -0.7
2,159,800 + -0.1
2,159,816 + -1.3
2,159,817 - +0.2
2,159,822 - -0.6
2,159,952 + OHPLBJKB_02083 0.20 -0.7
2,159,971 + OHPLBJKB_02083 0.24 +0.2
2,159,976 + OHPLBJKB_02083 0.25 +0.3
2,159,976 + OHPLBJKB_02083 0.25 +0.4
2,160,133 + OHPLBJKB_02083 0.61 +0.6
2,160,184 + OHPLBJKB_02083 0.73 -1.3
2,160,248 - OHPLBJKB_02083 0.88 -0.4
2,160,275 - +0.2
2,160,345 + -0.4
2,160,345 + +1.4
2,160,346 - +0.4

Or see this region's nucleotide sequence