Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_15525

Experiment: R2A_PIPES with Cadmium chloride 128 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpgi and tal overlap by 4 nucleotidestal and OKGIIK_15530 are separated by 37 nucleotidesOKGIIK_15530 and zwf overlap by 7 nucleotides OKGIIK_15520: pgi - glucose-6-phosphate isomerase, at 3,378,674 to 3,380,323 pgi OKGIIK_15525: tal - transaldolase, at 3,380,320 to 3,381,414 tal OKGIIK_15530: OKGIIK_15530 - Haloacid dehalogenase, at 3,381,452 to 3,382,168 _15530 OKGIIK_15535: zwf - glucose-6-phosphate dehydrogenase, at 3,382,162 to 3,383,778 zwf Position (kb) 3380 3381 3382Strain fitness (log2 ratio) -2 -1 0 1at 3379.813 kb on - strand, within pgiat 3379.813 kb on - strand, within pgiat 3379.830 kb on + strand, within pgiat 3379.831 kb on - strand, within pgiat 3379.831 kb on - strand, within pgiat 3379.831 kb on - strand, within pgiat 3380.170 kb on - strandat 3380.170 kb on - strandat 3380.178 kb on + strandat 3380.178 kb on + strandat 3380.600 kb on + strand, within talat 3380.600 kb on + strand, within talat 3380.601 kb on - strand, within talat 3380.601 kb on - strand, within talat 3380.601 kb on - strand, within talat 3380.601 kb on - strand, within talat 3380.601 kb on - strand, within talat 3380.601 kb on - strand, within talat 3380.726 kb on + strand, within talat 3380.727 kb on - strand, within talat 3380.727 kb on - strand, within talat 3380.883 kb on - strand, within talat 3380.883 kb on - strand, within talat 3380.883 kb on - strand, within talat 3380.883 kb on - strand, within talat 3380.903 kb on + strand, within talat 3380.904 kb on - strand, within talat 3380.904 kb on - strand, within talat 3380.904 kb on - strand, within talat 3380.904 kb on - strand, within talat 3381.242 kb on + strand, within talat 3381.243 kb on - strand, within talat 3381.243 kb on - strand, within talat 3381.243 kb on - strand, within talat 3381.320 kb on + strandat 3381.321 kb on - strandat 3381.443 kb on + strandat 3381.443 kb on + strandat 3381.444 kb on - strandat 3381.444 kb on - strandat 3381.444 kb on - strandat 3381.444 kb on - strandat 3381.444 kb on - strandat 3381.444 kb on - strandat 3381.444 kb on - strandat 3381.444 kb on - strandat 3381.444 kb on - strandat 3381.505 kb on + strandat 3381.505 kb on + strandat 3381.505 kb on + strandat 3381.505 kb on + strandat 3381.506 kb on - strandat 3381.585 kb on + strand, within OKGIIK_15530at 3381.586 kb on - strand, within OKGIIK_15530at 3381.678 kb on + strand, within OKGIIK_15530at 3381.679 kb on - strand, within OKGIIK_15530at 3381.679 kb on - strand, within OKGIIK_15530at 3381.679 kb on - strand, within OKGIIK_15530at 3381.679 kb on - strand, within OKGIIK_15530at 3381.679 kb on - strand, within OKGIIK_15530at 3381.679 kb on - strand, within OKGIIK_15530at 3381.735 kb on + strand, within OKGIIK_15530at 3381.736 kb on - strand, within OKGIIK_15530at 3381.736 kb on - strand, within OKGIIK_15530at 3381.736 kb on - strand, within OKGIIK_15530at 3381.897 kb on + strand, within OKGIIK_15530at 3381.897 kb on + strand, within OKGIIK_15530at 3381.910 kb on - strand, within OKGIIK_15530at 3381.910 kb on - strand, within OKGIIK_15530at 3381.910 kb on - strand, within OKGIIK_15530at 3381.910 kb on - strand, within OKGIIK_15530at 3382.014 kb on + strand, within OKGIIK_15530at 3382.015 kb on - strand, within OKGIIK_15530at 3382.015 kb on - strand, within OKGIIK_15530at 3382.015 kb on - strand, within OKGIIK_15530at 3382.026 kb on + strand, within OKGIIK_15530at 3382.027 kb on - strand, within OKGIIK_15530at 3382.259 kb on + strandat 3382.259 kb on + strandat 3382.259 kb on + strandat 3382.260 kb on - strandat 3382.260 kb on - strandat 3382.260 kb on - strandat 3382.260 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM
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3,379,813 - pgi OKGIIK_15520 0.69 -0.0
3,379,813 - pgi OKGIIK_15520 0.69 -0.5
3,379,830 + pgi OKGIIK_15520 0.70 -1.0
3,379,831 - pgi OKGIIK_15520 0.70 -1.5
3,379,831 - pgi OKGIIK_15520 0.70 -1.7
3,379,831 - pgi OKGIIK_15520 0.70 -1.9
3,380,170 - -1.4
3,380,170 - -1.4
3,380,178 + -1.2
3,380,178 + -1.5
3,380,600 + tal OKGIIK_15525 0.26 -1.7
3,380,600 + tal OKGIIK_15525 0.26 -1.2
3,380,601 - tal OKGIIK_15525 0.26 -0.5
3,380,601 - tal OKGIIK_15525 0.26 +0.8
3,380,601 - tal OKGIIK_15525 0.26 -0.8
3,380,601 - tal OKGIIK_15525 0.26 +0.4
3,380,601 - tal OKGIIK_15525 0.26 -1.9
3,380,601 - tal OKGIIK_15525 0.26 -1.4
3,380,726 + tal OKGIIK_15525 0.37 -0.2
3,380,727 - tal OKGIIK_15525 0.37 -0.4
3,380,727 - tal OKGIIK_15525 0.37 -0.5
3,380,883 - tal OKGIIK_15525 0.51 -0.0
3,380,883 - tal OKGIIK_15525 0.51 -0.5
3,380,883 - tal OKGIIK_15525 0.51 -2.0
3,380,883 - tal OKGIIK_15525 0.51 -2.1
3,380,903 + tal OKGIIK_15525 0.53 -0.3
3,380,904 - tal OKGIIK_15525 0.53 -1.2
3,380,904 - tal OKGIIK_15525 0.53 -0.5
3,380,904 - tal OKGIIK_15525 0.53 -1.2
3,380,904 - tal OKGIIK_15525 0.53 -1.9
3,381,242 + tal OKGIIK_15525 0.84 +1.4
3,381,243 - tal OKGIIK_15525 0.84 -0.2
3,381,243 - tal OKGIIK_15525 0.84 -0.2
3,381,243 - tal OKGIIK_15525 0.84 -0.5
3,381,320 + -1.7
3,381,321 - +0.1
3,381,443 + +1.4
3,381,443 + +0.2
3,381,444 - -0.8
3,381,444 - -0.5
3,381,444 - -1.2
3,381,444 - -1.5
3,381,444 - -0.5
3,381,444 - +1.2
3,381,444 - +1.3
3,381,444 - -1.0
3,381,444 - +0.2
3,381,505 + +1.2
3,381,505 + -1.0
3,381,505 + +0.6
3,381,505 + -1.5
3,381,506 - -1.5
3,381,585 + OKGIIK_15530 0.19 -0.2
3,381,586 - OKGIIK_15530 0.19 -0.7
3,381,678 + OKGIIK_15530 0.32 -1.0
3,381,679 - OKGIIK_15530 0.32 -0.6
3,381,679 - OKGIIK_15530 0.32 -1.2
3,381,679 - OKGIIK_15530 0.32 -0.4
3,381,679 - OKGIIK_15530 0.32 -0.8
3,381,679 - OKGIIK_15530 0.32 -0.6
3,381,679 - OKGIIK_15530 0.32 -0.1
3,381,735 + OKGIIK_15530 0.39 -1.0
3,381,736 - OKGIIK_15530 0.40 -0.1
3,381,736 - OKGIIK_15530 0.40 -1.6
3,381,736 - OKGIIK_15530 0.40 -0.5
3,381,897 + OKGIIK_15530 0.62 -1.9
3,381,897 + OKGIIK_15530 0.62 +0.5
3,381,910 - OKGIIK_15530 0.64 -1.0
3,381,910 - OKGIIK_15530 0.64 +1.1
3,381,910 - OKGIIK_15530 0.64 -1.2
3,381,910 - OKGIIK_15530 0.64 +0.2
3,382,014 + OKGIIK_15530 0.78 -0.9
3,382,015 - OKGIIK_15530 0.79 -0.6
3,382,015 - OKGIIK_15530 0.79 -0.3
3,382,015 - OKGIIK_15530 0.79 -1.2
3,382,026 + OKGIIK_15530 0.80 -0.4
3,382,027 - OKGIIK_15530 0.80 +0.5
3,382,259 + -1.5
3,382,259 + -0.9
3,382,259 + -0.9
3,382,260 - +0.8
3,382,260 - -0.1
3,382,260 - -1.7
3,382,260 - -0.0

Or see this region's nucleotide sequence