Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_14150

Experiment: R2A_PIPES with Cadmium chloride 128 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_14135 and OKGIIK_14140 are separated by 22 nucleotidesOKGIIK_14140 and OKGIIK_14145 overlap by 4 nucleotidesOKGIIK_14145 and OKGIIK_14150 are separated by 2 nucleotidesOKGIIK_14150 and OKGIIK_14155 are separated by 67 nucleotides OKGIIK_14135: OKGIIK_14135 - Nucleotide sugar aminotransferase, at 3,073,348 to 3,074,553 _14135 OKGIIK_14140: OKGIIK_14140 - EamA domain-containing protein, at 3,074,576 to 3,074,983 _14140 OKGIIK_14145: OKGIIK_14145 - EamA domain-containing protein, at 3,074,980 to 3,075,357 _14145 OKGIIK_14150: OKGIIK_14150 - Alpha/beta hydrolase, at 3,075,360 to 3,076,202 _14150 OKGIIK_14155: OKGIIK_14155 - Secretion protein HlyD, at 3,076,270 to 3,077,250 _14155 Position (kb) 3075 3076 3077Strain fitness (log2 ratio) -3 -2 -1 0 1at 3074.564 kb on + strandat 3074.565 kb on - strandat 3075.472 kb on + strand, within OKGIIK_14150at 3075.472 kb on + strand, within OKGIIK_14150at 3075.472 kb on + strand, within OKGIIK_14150at 3075.472 kb on + strand, within OKGIIK_14150at 3075.472 kb on + strand, within OKGIIK_14150at 3075.472 kb on + strand, within OKGIIK_14150at 3075.472 kb on + strand, within OKGIIK_14150at 3075.472 kb on + strand, within OKGIIK_14150at 3075.472 kb on + strand, within OKGIIK_14150at 3075.472 kb on + strand, within OKGIIK_14150at 3075.472 kb on + strand, within OKGIIK_14150at 3075.472 kb on + strand, within OKGIIK_14150at 3075.472 kb on + strand, within OKGIIK_14150at 3075.472 kb on + strand, within OKGIIK_14150at 3075.472 kb on + strand, within OKGIIK_14150at 3075.472 kb on + strand, within OKGIIK_14150at 3075.472 kb on + strand, within OKGIIK_14150at 3075.472 kb on + strand, within OKGIIK_14150at 3075.473 kb on - strand, within OKGIIK_14150at 3075.473 kb on - strand, within OKGIIK_14150at 3075.473 kb on - strand, within OKGIIK_14150at 3075.473 kb on - strand, within OKGIIK_14150at 3075.473 kb on - strand, within OKGIIK_14150at 3075.473 kb on - strand, within OKGIIK_14150at 3075.473 kb on - strand, within OKGIIK_14150at 3075.473 kb on - strand, within OKGIIK_14150at 3075.473 kb on - strand, within OKGIIK_14150at 3075.473 kb on - strand, within OKGIIK_14150at 3075.473 kb on - strand, within OKGIIK_14150at 3075.473 kb on - strand, within OKGIIK_14150at 3075.473 kb on - strand, within OKGIIK_14150at 3075.473 kb on - strand, within OKGIIK_14150at 3075.631 kb on + strand, within OKGIIK_14150at 3075.631 kb on + strand, within OKGIIK_14150at 3075.631 kb on + strand, within OKGIIK_14150at 3075.631 kb on + strand, within OKGIIK_14150at 3075.631 kb on + strand, within OKGIIK_14150at 3075.631 kb on + strand, within OKGIIK_14150at 3075.631 kb on + strand, within OKGIIK_14150at 3075.631 kb on + strand, within OKGIIK_14150at 3075.631 kb on + strand, within OKGIIK_14150at 3075.631 kb on + strand, within OKGIIK_14150at 3075.631 kb on + strand, within OKGIIK_14150at 3075.631 kb on + strand, within OKGIIK_14150at 3075.631 kb on + strand, within OKGIIK_14150at 3075.631 kb on + strand, within OKGIIK_14150at 3075.631 kb on + strand, within OKGIIK_14150at 3075.631 kb on + strand, within OKGIIK_14150at 3075.631 kb on + strand, within OKGIIK_14150at 3075.632 kb on - strand, within OKGIIK_14150at 3075.632 kb on - strand, within OKGIIK_14150at 3075.632 kb on - strand, within OKGIIK_14150at 3075.632 kb on - strand, within OKGIIK_14150at 3075.632 kb on - strand, within OKGIIK_14150at 3075.632 kb on - strand, within OKGIIK_14150at 3075.632 kb on - strand, within OKGIIK_14150at 3075.632 kb on - strand, within OKGIIK_14150at 3075.632 kb on - strand, within OKGIIK_14150at 3075.632 kb on - strand, within OKGIIK_14150at 3075.632 kb on - strand, within OKGIIK_14150at 3075.632 kb on - strand, within OKGIIK_14150at 3075.632 kb on - strand, within OKGIIK_14150at 3075.632 kb on - strand, within OKGIIK_14150at 3075.632 kb on - strand, within OKGIIK_14150at 3075.632 kb on - strand, within OKGIIK_14150at 3075.632 kb on - strand, within OKGIIK_14150at 3075.632 kb on - strand, within OKGIIK_14150at 3075.632 kb on - strand, within OKGIIK_14150at 3075.632 kb on - strand, within OKGIIK_14150at 3075.632 kb on - strand, within OKGIIK_14150at 3075.632 kb on - strand, within OKGIIK_14150at 3075.632 kb on - strand, within OKGIIK_14150at 3075.632 kb on - strand, within OKGIIK_14150at 3075.632 kb on - strand, within OKGIIK_14150at 3075.632 kb on - strand, within OKGIIK_14150at 3075.632 kb on - strand, within OKGIIK_14150at 3075.632 kb on - strand, within OKGIIK_14150at 3075.632 kb on - strand, within OKGIIK_14150at 3075.632 kb on - strand, within OKGIIK_14150at 3075.632 kb on - strand, within OKGIIK_14150at 3075.632 kb on - strand, within OKGIIK_14150at 3075.649 kb on + strand, within OKGIIK_14150at 3075.649 kb on + strand, within OKGIIK_14150at 3075.650 kb on - strand, within OKGIIK_14150at 3075.847 kb on + strand, within OKGIIK_14150at 3075.848 kb on - strand, within OKGIIK_14150at 3075.865 kb on + strand, within OKGIIK_14150at 3075.866 kb on - strand, within OKGIIK_14150at 3075.866 kb on - strand, within OKGIIK_14150at 3076.003 kb on + strand, within OKGIIK_14150at 3076.003 kb on + strand, within OKGIIK_14150at 3076.003 kb on + strand, within OKGIIK_14150at 3076.003 kb on + strand, within OKGIIK_14150at 3076.003 kb on + strand, within OKGIIK_14150at 3076.003 kb on + strand, within OKGIIK_14150at 3076.003 kb on + strand, within OKGIIK_14150at 3076.004 kb on - strand, within OKGIIK_14150at 3076.445 kb on + strand, within OKGIIK_14155at 3076.445 kb on + strand, within OKGIIK_14155at 3076.445 kb on + strand, within OKGIIK_14155at 3076.445 kb on + strand, within OKGIIK_14155at 3076.446 kb on - strand, within OKGIIK_14155at 3076.446 kb on - strand, within OKGIIK_14155at 3076.446 kb on - strand, within OKGIIK_14155at 3076.446 kb on - strand, within OKGIIK_14155at 3076.446 kb on - strand, within OKGIIK_14155at 3076.446 kb on - strand, within OKGIIK_14155at 3076.703 kb on + strand, within OKGIIK_14155at 3076.704 kb on - strand, within OKGIIK_14155at 3076.704 kb on - strand, within OKGIIK_14155at 3077.100 kb on - strand, within OKGIIK_14155at 3077.100 kb on - strand, within OKGIIK_14155at 3077.100 kb on - strand, within OKGIIK_14155at 3077.100 kb on - strand, within OKGIIK_14155at 3077.100 kb on - strand, within OKGIIK_14155at 3077.100 kb on - strand, within OKGIIK_14155at 3077.100 kb on - strand, within OKGIIK_14155

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM
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3,074,564 + -2.2
3,074,565 - +0.3
3,075,472 + OKGIIK_14150 0.13 -2.0
3,075,472 + OKGIIK_14150 0.13 -0.5
3,075,472 + OKGIIK_14150 0.13 -1.2
3,075,472 + OKGIIK_14150 0.13 +0.2
3,075,472 + OKGIIK_14150 0.13 +0.8
3,075,472 + OKGIIK_14150 0.13 -0.8
3,075,472 + OKGIIK_14150 0.13 +0.5
3,075,472 + OKGIIK_14150 0.13 -1.3
3,075,472 + OKGIIK_14150 0.13 -0.2
3,075,472 + OKGIIK_14150 0.13 -0.8
3,075,472 + OKGIIK_14150 0.13 -1.0
3,075,472 + OKGIIK_14150 0.13 -0.8
3,075,472 + OKGIIK_14150 0.13 +0.4
3,075,472 + OKGIIK_14150 0.13 -1.0
3,075,472 + OKGIIK_14150 0.13 -1.0
3,075,472 + OKGIIK_14150 0.13 -0.4
3,075,472 + OKGIIK_14150 0.13 -1.2
3,075,472 + OKGIIK_14150 0.13 -1.7
3,075,473 - OKGIIK_14150 0.13 +0.3
3,075,473 - OKGIIK_14150 0.13 +0.2
3,075,473 - OKGIIK_14150 0.13 +0.8
3,075,473 - OKGIIK_14150 0.13 -0.2
3,075,473 - OKGIIK_14150 0.13 -0.2
3,075,473 - OKGIIK_14150 0.13 -2.1
3,075,473 - OKGIIK_14150 0.13 -1.0
3,075,473 - OKGIIK_14150 0.13 -0.8
3,075,473 - OKGIIK_14150 0.13 +0.1
3,075,473 - OKGIIK_14150 0.13 -2.1
3,075,473 - OKGIIK_14150 0.13 -0.9
3,075,473 - OKGIIK_14150 0.13 -0.5
3,075,473 - OKGIIK_14150 0.13 -0.2
3,075,473 - OKGIIK_14150 0.13 -1.2
3,075,631 + OKGIIK_14150 0.32 -1.5
3,075,631 + OKGIIK_14150 0.32 -1.4
3,075,631 + OKGIIK_14150 0.32 -0.0
3,075,631 + OKGIIK_14150 0.32 -2.8
3,075,631 + OKGIIK_14150 0.32 -1.1
3,075,631 + OKGIIK_14150 0.32 -0.2
3,075,631 + OKGIIK_14150 0.32 -1.9
3,075,631 + OKGIIK_14150 0.32 -1.4
3,075,631 + OKGIIK_14150 0.32 -0.8
3,075,631 + OKGIIK_14150 0.32 +0.1
3,075,631 + OKGIIK_14150 0.32 -0.2
3,075,631 + OKGIIK_14150 0.32 -2.4
3,075,631 + OKGIIK_14150 0.32 -0.9
3,075,631 + OKGIIK_14150 0.32 -1.4
3,075,631 + OKGIIK_14150 0.32 -1.1
3,075,631 + OKGIIK_14150 0.32 -1.1
3,075,631 + OKGIIK_14150 0.32 -1.4
3,075,632 - OKGIIK_14150 0.32 -1.3
3,075,632 - OKGIIK_14150 0.32 -0.5
3,075,632 - OKGIIK_14150 0.32 -2.7
3,075,632 - OKGIIK_14150 0.32 -2.1
3,075,632 - OKGIIK_14150 0.32 -1.9
3,075,632 - OKGIIK_14150 0.32 -0.7
3,075,632 - OKGIIK_14150 0.32 -2.1
3,075,632 - OKGIIK_14150 0.32 -0.0
3,075,632 - OKGIIK_14150 0.32 -0.4
3,075,632 - OKGIIK_14150 0.32 -1.5
3,075,632 - OKGIIK_14150 0.32 -1.9
3,075,632 - OKGIIK_14150 0.32 -0.5
3,075,632 - OKGIIK_14150 0.32 -0.8
3,075,632 - OKGIIK_14150 0.32 -1.7
3,075,632 - OKGIIK_14150 0.32 +1.4
3,075,632 - OKGIIK_14150 0.32 -1.0
3,075,632 - OKGIIK_14150 0.32 +0.7
3,075,632 - OKGIIK_14150 0.32 -1.2
3,075,632 - OKGIIK_14150 0.32 -0.2
3,075,632 - OKGIIK_14150 0.32 +1.2
3,075,632 - OKGIIK_14150 0.32 -0.8
3,075,632 - OKGIIK_14150 0.32 -1.6
3,075,632 - OKGIIK_14150 0.32 -0.8
3,075,632 - OKGIIK_14150 0.32 +0.8
3,075,632 - OKGIIK_14150 0.32 -0.2
3,075,632 - OKGIIK_14150 0.32 -1.6
3,075,632 - OKGIIK_14150 0.32 -1.5
3,075,632 - OKGIIK_14150 0.32 -3.5
3,075,632 - OKGIIK_14150 0.32 -1.4
3,075,632 - OKGIIK_14150 0.32 -0.2
3,075,632 - OKGIIK_14150 0.32 -0.5
3,075,632 - OKGIIK_14150 0.32 -1.5
3,075,649 + OKGIIK_14150 0.34 -1.2
3,075,649 + OKGIIK_14150 0.34 +0.6
3,075,650 - OKGIIK_14150 0.34 +0.2
3,075,847 + OKGIIK_14150 0.58 -0.4
3,075,848 - OKGIIK_14150 0.58 -2.0
3,075,865 + OKGIIK_14150 0.60 -1.0
3,075,866 - OKGIIK_14150 0.60 -1.0
3,075,866 - OKGIIK_14150 0.60 -0.5
3,076,003 + OKGIIK_14150 0.76 -0.2
3,076,003 + OKGIIK_14150 0.76 +1.1
3,076,003 + OKGIIK_14150 0.76 -1.9
3,076,003 + OKGIIK_14150 0.76 -0.1
3,076,003 + OKGIIK_14150 0.76 +1.1
3,076,003 + OKGIIK_14150 0.76 -1.1
3,076,003 + OKGIIK_14150 0.76 -0.2
3,076,004 - OKGIIK_14150 0.76 -0.2
3,076,445 + OKGIIK_14155 0.18 -0.4
3,076,445 + OKGIIK_14155 0.18 +0.2
3,076,445 + OKGIIK_14155 0.18 -0.2
3,076,445 + OKGIIK_14155 0.18 -0.5
3,076,446 - OKGIIK_14155 0.18 -1.8
3,076,446 - OKGIIK_14155 0.18 -0.5
3,076,446 - OKGIIK_14155 0.18 -0.2
3,076,446 - OKGIIK_14155 0.18 -1.7
3,076,446 - OKGIIK_14155 0.18 -0.5
3,076,446 - OKGIIK_14155 0.18 -2.3
3,076,703 + OKGIIK_14155 0.44 -1.5
3,076,704 - OKGIIK_14155 0.44 -2.2
3,076,704 - OKGIIK_14155 0.44 -0.2
3,077,100 - OKGIIK_14155 0.85 +0.5
3,077,100 - OKGIIK_14155 0.85 -0.7
3,077,100 - OKGIIK_14155 0.85 -2.0
3,077,100 - OKGIIK_14155 0.85 -0.8
3,077,100 - OKGIIK_14155 0.85 -0.2
3,077,100 - OKGIIK_14155 0.85 -0.5
3,077,100 - OKGIIK_14155 0.85 +1.1

Or see this region's nucleotide sequence