Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_14110

Experiment: R2A_PIPES with Cadmium chloride 128 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_14105 and fabB are separated by 408 nucleotidesfabB and OKGIIK_14115 overlap by 1 nucleotidesOKGIIK_14115 and OKGIIK_14120 are separated by 95 nucleotides OKGIIK_14105: OKGIIK_14105 - hypothetical protein, at 3,066,614 to 3,067,642 _14105 OKGIIK_14110: fabB - 3-oxoacyl-(acyl-carrier-protein) synthase, at 3,068,051 to 3,069,283 fabB OKGIIK_14115: OKGIIK_14115 - Phosphopantetheine-binding protein, at 3,069,283 to 3,069,555 _14115 OKGIIK_14120: OKGIIK_14120 - putative N-acyltransferase, at 3,069,651 to 3,070,721 _14120 Position (kb) 3068 3069 3070Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3067.085 kb on + strand, within OKGIIK_14105at 3067.085 kb on + strand, within OKGIIK_14105at 3067.085 kb on + strand, within OKGIIK_14105at 3067.085 kb on + strand, within OKGIIK_14105at 3067.085 kb on + strand, within OKGIIK_14105at 3067.085 kb on + strand, within OKGIIK_14105at 3067.086 kb on - strand, within OKGIIK_14105at 3067.086 kb on - strand, within OKGIIK_14105at 3067.086 kb on - strand, within OKGIIK_14105at 3067.086 kb on - strand, within OKGIIK_14105at 3067.086 kb on - strand, within OKGIIK_14105at 3067.243 kb on + strand, within OKGIIK_14105at 3067.243 kb on + strand, within OKGIIK_14105at 3067.260 kb on + strand, within OKGIIK_14105at 3067.260 kb on + strand, within OKGIIK_14105at 3067.260 kb on + strand, within OKGIIK_14105at 3067.260 kb on + strand, within OKGIIK_14105at 3067.260 kb on + strand, within OKGIIK_14105at 3067.260 kb on + strand, within OKGIIK_14105at 3067.260 kb on + strand, within OKGIIK_14105at 3067.260 kb on + strand, within OKGIIK_14105at 3067.260 kb on + strand, within OKGIIK_14105at 3067.260 kb on + strand, within OKGIIK_14105at 3067.260 kb on + strand, within OKGIIK_14105at 3067.260 kb on + strand, within OKGIIK_14105at 3067.260 kb on + strand, within OKGIIK_14105at 3067.261 kb on - strand, within OKGIIK_14105at 3067.261 kb on - strand, within OKGIIK_14105at 3067.261 kb on - strand, within OKGIIK_14105at 3067.261 kb on - strand, within OKGIIK_14105at 3067.261 kb on - strand, within OKGIIK_14105at 3067.261 kb on - strand, within OKGIIK_14105at 3067.261 kb on - strand, within OKGIIK_14105at 3067.261 kb on - strand, within OKGIIK_14105at 3067.261 kb on - strand, within OKGIIK_14105at 3067.261 kb on - strand, within OKGIIK_14105at 3067.261 kb on - strand, within OKGIIK_14105at 3067.261 kb on - strand, within OKGIIK_14105at 3067.261 kb on - strand, within OKGIIK_14105at 3067.261 kb on - strand, within OKGIIK_14105at 3067.261 kb on - strand, within OKGIIK_14105at 3067.261 kb on - strand, within OKGIIK_14105at 3067.261 kb on - strand, within OKGIIK_14105at 3067.261 kb on - strand, within OKGIIK_14105at 3067.261 kb on - strand, within OKGIIK_14105at 3067.326 kb on + strand, within OKGIIK_14105at 3067.326 kb on + strand, within OKGIIK_14105at 3067.427 kb on - strand, within OKGIIK_14105at 3067.427 kb on - strand, within OKGIIK_14105at 3067.509 kb on + strand, within OKGIIK_14105at 3067.509 kb on + strand, within OKGIIK_14105at 3067.509 kb on + strand, within OKGIIK_14105at 3067.509 kb on + strand, within OKGIIK_14105at 3067.509 kb on + strand, within OKGIIK_14105at 3067.510 kb on - strand, within OKGIIK_14105at 3067.510 kb on - strand, within OKGIIK_14105at 3067.510 kb on - strand, within OKGIIK_14105at 3067.510 kb on - strand, within OKGIIK_14105at 3067.924 kb on + strandat 3067.967 kb on + strandat 3067.967 kb on + strandat 3067.967 kb on + strandat 3067.967 kb on + strandat 3067.967 kb on + strandat 3067.967 kb on + strandat 3067.967 kb on + strandat 3067.967 kb on + strandat 3067.967 kb on + strandat 3067.967 kb on + strandat 3067.967 kb on + strandat 3067.968 kb on - strandat 3067.968 kb on - strandat 3067.968 kb on - strandat 3067.968 kb on - strandat 3067.968 kb on - strandat 3067.968 kb on - strandat 3067.968 kb on - strandat 3067.982 kb on + strandat 3067.983 kb on - strandat 3068.154 kb on + strandat 3068.154 kb on + strandat 3068.154 kb on + strandat 3068.154 kb on + strandat 3068.154 kb on + strandat 3068.154 kb on + strandat 3068.154 kb on + strandat 3068.154 kb on + strandat 3068.154 kb on + strandat 3068.154 kb on + strandat 3068.154 kb on + strandat 3068.154 kb on + strandat 3068.154 kb on + strandat 3068.155 kb on - strandat 3068.155 kb on - strandat 3068.155 kb on - strandat 3068.155 kb on - strandat 3068.155 kb on - strandat 3068.155 kb on - strandat 3068.155 kb on - strandat 3068.155 kb on - strandat 3068.155 kb on - strandat 3068.155 kb on - strandat 3068.155 kb on - strandat 3068.394 kb on + strand, within fabBat 3068.394 kb on + strand, within fabBat 3068.394 kb on + strand, within fabBat 3068.394 kb on + strand, within fabBat 3068.394 kb on + strand, within fabBat 3068.394 kb on + strand, within fabBat 3068.394 kb on + strand, within fabBat 3068.394 kb on + strand, within fabBat 3068.395 kb on - strand, within fabBat 3068.395 kb on - strand, within fabBat 3068.395 kb on - strand, within fabBat 3068.395 kb on - strand, within fabBat 3068.395 kb on - strand, within fabBat 3068.395 kb on - strand, within fabBat 3068.679 kb on + strand, within fabBat 3068.679 kb on + strand, within fabBat 3068.679 kb on + strand, within fabBat 3068.679 kb on + strand, within fabBat 3068.680 kb on - strand, within fabBat 3068.680 kb on - strand, within fabBat 3068.680 kb on - strand, within fabBat 3068.680 kb on - strand, within fabBat 3068.680 kb on - strand, within fabBat 3068.901 kb on + strand, within fabBat 3068.902 kb on - strand, within fabBat 3068.902 kb on - strand, within fabBat 3069.615 kb on + strandat 3069.615 kb on + strandat 3069.615 kb on + strandat 3069.616 kb on - strandat 3069.616 kb on - strandat 3069.616 kb on - strandat 3069.616 kb on - strandat 3069.616 kb on - strandat 3069.616 kb on - strandat 3069.616 kb on - strandat 3069.616 kb on - strandat 3069.632 kb on + strandat 3069.633 kb on - strandat 3069.633 kb on - strandat 3069.646 kb on + strandat 3069.646 kb on + strandat 3069.646 kb on + strandat 3069.646 kb on + strandat 3069.647 kb on - strandat 3069.647 kb on - strandat 3069.891 kb on + strand, within OKGIIK_14120at 3069.892 kb on - strand, within OKGIIK_14120at 3070.131 kb on + strand, within OKGIIK_14120at 3070.131 kb on + strand, within OKGIIK_14120at 3070.131 kb on + strand, within OKGIIK_14120at 3070.131 kb on + strand, within OKGIIK_14120at 3070.131 kb on + strand, within OKGIIK_14120at 3070.131 kb on + strand, within OKGIIK_14120at 3070.131 kb on + strand, within OKGIIK_14120at 3070.132 kb on - strand, within OKGIIK_14120at 3070.132 kb on - strand, within OKGIIK_14120at 3070.132 kb on - strand, within OKGIIK_14120at 3070.132 kb on - strand, within OKGIIK_14120at 3070.132 kb on - strand, within OKGIIK_14120at 3070.149 kb on + strand, within OKGIIK_14120at 3070.149 kb on + strand, within OKGIIK_14120at 3070.149 kb on + strand, within OKGIIK_14120at 3070.149 kb on + strand, within OKGIIK_14120at 3070.149 kb on + strand, within OKGIIK_14120at 3070.149 kb on + strand, within OKGIIK_14120at 3070.149 kb on + strand, within OKGIIK_14120at 3070.150 kb on - strand, within OKGIIK_14120at 3070.150 kb on - strand, within OKGIIK_14120at 3070.150 kb on - strand, within OKGIIK_14120at 3070.150 kb on - strand, within OKGIIK_14120at 3070.150 kb on - strand, within OKGIIK_14120

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM
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3,067,085 + OKGIIK_14105 0.46 -1.1
3,067,085 + OKGIIK_14105 0.46 -0.9
3,067,085 + OKGIIK_14105 0.46 -1.4
3,067,085 + OKGIIK_14105 0.46 -0.2
3,067,085 + OKGIIK_14105 0.46 +0.6
3,067,085 + OKGIIK_14105 0.46 +0.6
3,067,086 - OKGIIK_14105 0.46 -1.2
3,067,086 - OKGIIK_14105 0.46 -3.1
3,067,086 - OKGIIK_14105 0.46 -0.2
3,067,086 - OKGIIK_14105 0.46 -0.5
3,067,086 - OKGIIK_14105 0.46 -2.4
3,067,243 + OKGIIK_14105 0.61 +0.8
3,067,243 + OKGIIK_14105 0.61 -1.5
3,067,260 + OKGIIK_14105 0.63 -1.2
3,067,260 + OKGIIK_14105 0.63 -0.5
3,067,260 + OKGIIK_14105 0.63 -1.5
3,067,260 + OKGIIK_14105 0.63 -0.2
3,067,260 + OKGIIK_14105 0.63 -1.0
3,067,260 + OKGIIK_14105 0.63 +1.5
3,067,260 + OKGIIK_14105 0.63 -2.4
3,067,260 + OKGIIK_14105 0.63 -1.1
3,067,260 + OKGIIK_14105 0.63 -1.2
3,067,260 + OKGIIK_14105 0.63 -2.4
3,067,260 + OKGIIK_14105 0.63 +0.7
3,067,260 + OKGIIK_14105 0.63 -1.7
3,067,260 + OKGIIK_14105 0.63 +0.4
3,067,261 - OKGIIK_14105 0.63 +0.3
3,067,261 - OKGIIK_14105 0.63 -0.8
3,067,261 - OKGIIK_14105 0.63 -0.5
3,067,261 - OKGIIK_14105 0.63 +1.3
3,067,261 - OKGIIK_14105 0.63 -0.8
3,067,261 - OKGIIK_14105 0.63 -0.6
3,067,261 - OKGIIK_14105 0.63 -0.6
3,067,261 - OKGIIK_14105 0.63 +0.5
3,067,261 - OKGIIK_14105 0.63 -1.7
3,067,261 - OKGIIK_14105 0.63 -1.0
3,067,261 - OKGIIK_14105 0.63 +0.8
3,067,261 - OKGIIK_14105 0.63 -2.0
3,067,261 - OKGIIK_14105 0.63 -0.2
3,067,261 - OKGIIK_14105 0.63 -0.7
3,067,261 - OKGIIK_14105 0.63 -1.4
3,067,261 - OKGIIK_14105 0.63 -0.7
3,067,261 - OKGIIK_14105 0.63 -0.2
3,067,261 - OKGIIK_14105 0.63 +0.2
3,067,261 - OKGIIK_14105 0.63 -0.2
3,067,326 + OKGIIK_14105 0.69 -1.2
3,067,326 + OKGIIK_14105 0.69 -0.8
3,067,427 - OKGIIK_14105 0.79 -0.3
3,067,427 - OKGIIK_14105 0.79 +0.6
3,067,509 + OKGIIK_14105 0.87 +1.1
3,067,509 + OKGIIK_14105 0.87 -0.2
3,067,509 + OKGIIK_14105 0.87 +0.8
3,067,509 + OKGIIK_14105 0.87 +0.2
3,067,509 + OKGIIK_14105 0.87 +0.8
3,067,510 - OKGIIK_14105 0.87 +0.5
3,067,510 - OKGIIK_14105 0.87 +2.4
3,067,510 - OKGIIK_14105 0.87 -0.2
3,067,510 - OKGIIK_14105 0.87 +0.4
3,067,924 + -1.4
3,067,967 + +1.0
3,067,967 + -0.2
3,067,967 + +0.2
3,067,967 + -0.9
3,067,967 + +0.3
3,067,967 + -2.0
3,067,967 + -1.9
3,067,967 + -0.2
3,067,967 + -0.2
3,067,967 + -0.5
3,067,967 + +0.1
3,067,968 - +0.7
3,067,968 - +1.3
3,067,968 - -1.0
3,067,968 - +0.2
3,067,968 - +0.4
3,067,968 - -0.2
3,067,968 - -0.5
3,067,982 + -0.8
3,067,983 - -0.8
3,068,154 + -0.5
3,068,154 + -1.0
3,068,154 + -1.2
3,068,154 + -0.4
3,068,154 + -1.2
3,068,154 + -1.0
3,068,154 + -0.2
3,068,154 + +0.4
3,068,154 + -0.2
3,068,154 + -1.3
3,068,154 + -0.5
3,068,154 + -1.2
3,068,154 + +1.4
3,068,155 - -1.2
3,068,155 - +1.0
3,068,155 - +0.8
3,068,155 - -1.3
3,068,155 - -1.4
3,068,155 - -1.9
3,068,155 - -3.6
3,068,155 - -0.5
3,068,155 - -2.2
3,068,155 - -0.2
3,068,155 - +0.3
3,068,394 + fabB OKGIIK_14110 0.28 -0.2
3,068,394 + fabB OKGIIK_14110 0.28 -1.4
3,068,394 + fabB OKGIIK_14110 0.28 +0.6
3,068,394 + fabB OKGIIK_14110 0.28 -1.5
3,068,394 + fabB OKGIIK_14110 0.28 -1.4
3,068,394 + fabB OKGIIK_14110 0.28 -1.4
3,068,394 + fabB OKGIIK_14110 0.28 +0.5
3,068,394 + fabB OKGIIK_14110 0.28 -1.7
3,068,395 - fabB OKGIIK_14110 0.28 -1.0
3,068,395 - fabB OKGIIK_14110 0.28 +0.4
3,068,395 - fabB OKGIIK_14110 0.28 +2.1
3,068,395 - fabB OKGIIK_14110 0.28 -1.0
3,068,395 - fabB OKGIIK_14110 0.28 -0.5
3,068,395 - fabB OKGIIK_14110 0.28 -0.2
3,068,679 + fabB OKGIIK_14110 0.51 -0.5
3,068,679 + fabB OKGIIK_14110 0.51 -2.4
3,068,679 + fabB OKGIIK_14110 0.51 -0.5
3,068,679 + fabB OKGIIK_14110 0.51 -2.2
3,068,680 - fabB OKGIIK_14110 0.51 -0.5
3,068,680 - fabB OKGIIK_14110 0.51 -1.5
3,068,680 - fabB OKGIIK_14110 0.51 +1.4
3,068,680 - fabB OKGIIK_14110 0.51 -1.2
3,068,680 - fabB OKGIIK_14110 0.51 +0.8
3,068,901 + fabB OKGIIK_14110 0.69 -1.5
3,068,902 - fabB OKGIIK_14110 0.69 +0.8
3,068,902 - fabB OKGIIK_14110 0.69 +1.7
3,069,615 + -1.4
3,069,615 + -1.8
3,069,615 + -1.4
3,069,616 - +0.8
3,069,616 - -2.2
3,069,616 - -0.9
3,069,616 - +0.3
3,069,616 - -1.5
3,069,616 - -2.5
3,069,616 - -2.3
3,069,616 - -0.5
3,069,632 + -2.1
3,069,633 - -0.8
3,069,633 - -0.8
3,069,646 + -0.4
3,069,646 + -1.9
3,069,646 + +0.2
3,069,646 + -0.6
3,069,647 - -0.8
3,069,647 - +0.6
3,069,891 + OKGIIK_14120 0.22 -0.4
3,069,892 - OKGIIK_14120 0.23 +0.6
3,070,131 + OKGIIK_14120 0.45 -0.8
3,070,131 + OKGIIK_14120 0.45 -1.8
3,070,131 + OKGIIK_14120 0.45 +1.8
3,070,131 + OKGIIK_14120 0.45 -2.0
3,070,131 + OKGIIK_14120 0.45 -1.9
3,070,131 + OKGIIK_14120 0.45 -1.2
3,070,131 + OKGIIK_14120 0.45 -0.8
3,070,132 - OKGIIK_14120 0.45 -0.2
3,070,132 - OKGIIK_14120 0.45 -0.5
3,070,132 - OKGIIK_14120 0.45 -1.5
3,070,132 - OKGIIK_14120 0.45 -0.9
3,070,132 - OKGIIK_14120 0.45 -1.6
3,070,149 + OKGIIK_14120 0.46 -0.8
3,070,149 + OKGIIK_14120 0.46 +0.3
3,070,149 + OKGIIK_14120 0.46 -0.3
3,070,149 + OKGIIK_14120 0.46 -0.2
3,070,149 + OKGIIK_14120 0.46 -0.7
3,070,149 + OKGIIK_14120 0.46 -0.8
3,070,149 + OKGIIK_14120 0.46 -1.8
3,070,150 - OKGIIK_14120 0.47 -0.4
3,070,150 - OKGIIK_14120 0.47 -1.4
3,070,150 - OKGIIK_14120 0.47 +0.5
3,070,150 - OKGIIK_14120 0.47 -1.4
3,070,150 - OKGIIK_14120 0.47 +1.1

Or see this region's nucleotide sequence