Experiment: R2A_PIPES with Cadmium chloride 128 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rho and OKGIIK_12965 are separated by 219 nucleotides OKGIIK_12965 and pyrC are separated by 77 nucleotides
OKGIIK_12960: rho - transcription termination factor Rho, at 2,796,719 to 2,798,521
rho
OKGIIK_12965: OKGIIK_12965 - glutamate--cysteine ligase, at 2,798,741 to 2,800,108
_12965
OKGIIK_12970: pyrC - dihydroorotase, at 2,800,186 to 2,801,238
pyrC
Position (kb)
2798
2799
2800
2801 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2798.547 kb on + strand at 2798.548 kb on - strand at 2798.548 kb on - strand at 2798.548 kb on - strand at 2798.548 kb on - strand at 2798.710 kb on + strand at 2798.710 kb on + strand at 2798.710 kb on + strand at 2798.711 kb on - strand at 2798.749 kb on - strand at 2798.802 kb on - strand at 2799.206 kb on + strand, within OKGIIK_12965 at 2799.207 kb on - strand, within OKGIIK_12965 at 2799.224 kb on + strand, within OKGIIK_12965 at 2799.224 kb on + strand, within OKGIIK_12965 at 2799.224 kb on + strand, within OKGIIK_12965 at 2799.224 kb on + strand, within OKGIIK_12965 at 2799.225 kb on - strand, within OKGIIK_12965 at 2799.225 kb on - strand, within OKGIIK_12965 at 2799.225 kb on - strand, within OKGIIK_12965 at 2799.407 kb on + strand, within OKGIIK_12965 at 2799.407 kb on + strand, within OKGIIK_12965 at 2799.408 kb on - strand, within OKGIIK_12965 at 2799.417 kb on - strand, within OKGIIK_12965 at 2799.512 kb on + strand, within OKGIIK_12965 at 2799.513 kb on - strand, within OKGIIK_12965 at 2799.513 kb on - strand, within OKGIIK_12965 at 2799.513 kb on - strand, within OKGIIK_12965 at 2799.533 kb on + strand, within OKGIIK_12965 at 2799.533 kb on + strand, within OKGIIK_12965 at 2799.533 kb on + strand, within OKGIIK_12965 at 2799.533 kb on + strand, within OKGIIK_12965 at 2799.534 kb on - strand, within OKGIIK_12965 at 2799.534 kb on - strand, within OKGIIK_12965 at 2799.542 kb on + strand, within OKGIIK_12965 at 2799.557 kb on + strand, within OKGIIK_12965 at 2799.558 kb on - strand, within OKGIIK_12965 at 2799.558 kb on - strand, within OKGIIK_12965 at 2799.692 kb on + strand, within OKGIIK_12965 at 2799.693 kb on - strand, within OKGIIK_12965 at 2799.693 kb on - strand, within OKGIIK_12965 at 2799.770 kb on + strand, within OKGIIK_12965 at 2799.770 kb on + strand, within OKGIIK_12965 at 2800.103 kb on + strand at 2800.103 kb on + strand at 2800.104 kb on - strand at 2800.131 kb on + strand at 2800.144 kb on + strand at 2800.144 kb on + strand at 2800.144 kb on + strand at 2800.144 kb on + strand at 2800.144 kb on + strand at 2800.144 kb on + strand at 2800.144 kb on + strand at 2800.144 kb on + strand at 2800.144 kb on + strand at 2800.144 kb on + strand at 2800.144 kb on + strand at 2800.144 kb on + strand at 2800.144 kb on + strand at 2800.144 kb on + strand at 2800.144 kb on + strand at 2800.144 kb on + strand at 2800.144 kb on + strand at 2800.144 kb on + strand at 2800.144 kb on + strand at 2800.144 kb on + strand at 2800.144 kb on + strand at 2800.144 kb on + strand at 2800.144 kb on + strand at 2800.144 kb on + strand at 2800.144 kb on + strand at 2800.145 kb on - strand at 2800.145 kb on - strand at 2800.145 kb on - strand at 2800.145 kb on - strand at 2800.145 kb on - strand at 2800.145 kb on - strand at 2800.145 kb on - strand at 2800.145 kb on - strand at 2800.145 kb on - strand at 2800.145 kb on - strand at 2800.145 kb on - strand at 2800.145 kb on - strand at 2800.145 kb on - strand at 2800.145 kb on - strand at 2800.145 kb on - strand at 2800.145 kb on - strand at 2800.145 kb on - strand at 2800.145 kb on - strand at 2800.145 kb on - strand at 2800.145 kb on - strand at 2800.145 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM remove 2,798,547 + -0.1 2,798,548 - +0.6 2,798,548 - -1.1 2,798,548 - +0.7 2,798,548 - -0.1 2,798,710 + -0.6 2,798,710 + +0.4 2,798,710 + +1.9 2,798,711 - -0.5 2,798,749 - +0.6 2,798,802 - -0.1 2,799,206 + OKGIIK_12965 0.34 -0.1 2,799,207 - OKGIIK_12965 0.34 +0.9 2,799,224 + OKGIIK_12965 0.35 -0.9 2,799,224 + OKGIIK_12965 0.35 -1.1 2,799,224 + OKGIIK_12965 0.35 -0.1 2,799,224 + OKGIIK_12965 0.35 +0.4 2,799,225 - OKGIIK_12965 0.35 -1.4 2,799,225 - OKGIIK_12965 0.35 -0.6 2,799,225 - OKGIIK_12965 0.35 -0.1 2,799,407 + OKGIIK_12965 0.49 -2.0 2,799,407 + OKGIIK_12965 0.49 +0.5 2,799,408 - OKGIIK_12965 0.49 -0.9 2,799,417 - OKGIIK_12965 0.49 +1.5 2,799,512 + OKGIIK_12965 0.56 -0.4 2,799,513 - OKGIIK_12965 0.56 -1.1 2,799,513 - OKGIIK_12965 0.56 -1.9 2,799,513 - OKGIIK_12965 0.56 +0.9 2,799,533 + OKGIIK_12965 0.58 -1.4 2,799,533 + OKGIIK_12965 0.58 -1.1 2,799,533 + OKGIIK_12965 0.58 -0.5 2,799,533 + OKGIIK_12965 0.58 -2.6 2,799,534 - OKGIIK_12965 0.58 -1.3 2,799,534 - OKGIIK_12965 0.58 -0.4 2,799,542 + OKGIIK_12965 0.59 -2.1 2,799,557 + OKGIIK_12965 0.60 -2.2 2,799,558 - OKGIIK_12965 0.60 -0.4 2,799,558 - OKGIIK_12965 0.60 -1.9 2,799,692 + OKGIIK_12965 0.70 -2.4 2,799,693 - OKGIIK_12965 0.70 -0.6 2,799,693 - OKGIIK_12965 0.70 -1.2 2,799,770 + OKGIIK_12965 0.75 +0.1 2,799,770 + OKGIIK_12965 0.75 -0.2 2,800,103 + -0.9 2,800,103 + +1.9 2,800,104 - +1.7 2,800,131 + -1.2 2,800,144 + -1.2 2,800,144 + -0.5 2,800,144 + +1.6 2,800,144 + +1.5 2,800,144 + -0.3 2,800,144 + -0.6 2,800,144 + +0.9 2,800,144 + +1.9 2,800,144 + +1.6 2,800,144 + -1.1 2,800,144 + -0.4 2,800,144 + +0.1 2,800,144 + -0.8 2,800,144 + +0.1 2,800,144 + -0.6 2,800,144 + -0.9 2,800,144 + -0.4 2,800,144 + -1.6 2,800,144 + +0.0 2,800,144 + -0.9 2,800,144 + +0.9 2,800,144 + -0.4 2,800,144 + -0.4 2,800,144 + -1.1 2,800,144 + +0.7 2,800,145 - +1.1 2,800,145 - -1.1 2,800,145 - -1.9 2,800,145 - +0.5 2,800,145 - -2.2 2,800,145 - +1.2 2,800,145 - +0.6 2,800,145 - -0.4 2,800,145 - +0.8 2,800,145 - -1.7 2,800,145 - -0.2 2,800,145 - +0.6 2,800,145 - +0.6 2,800,145 - +0.6 2,800,145 - +1.4 2,800,145 - -1.9 2,800,145 - -0.1 2,800,145 - +1.3 2,800,145 - -0.6 2,800,145 - +0.4 2,800,145 - -0.6
Or see this region's nucleotide sequence