Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_12965

Experiment: R2A_PIPES with Cadmium chloride 128 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrho and OKGIIK_12965 are separated by 219 nucleotidesOKGIIK_12965 and pyrC are separated by 77 nucleotides OKGIIK_12960: rho - transcription termination factor Rho, at 2,796,719 to 2,798,521 rho OKGIIK_12965: OKGIIK_12965 - glutamate--cysteine ligase, at 2,798,741 to 2,800,108 _12965 OKGIIK_12970: pyrC - dihydroorotase, at 2,800,186 to 2,801,238 pyrC Position (kb) 2798 2799 2800 2801Strain fitness (log2 ratio) -2 -1 0 1 2at 2798.547 kb on + strandat 2798.548 kb on - strandat 2798.548 kb on - strandat 2798.548 kb on - strandat 2798.548 kb on - strandat 2798.710 kb on + strandat 2798.710 kb on + strandat 2798.710 kb on + strandat 2798.711 kb on - strandat 2798.749 kb on - strandat 2798.802 kb on - strandat 2799.206 kb on + strand, within OKGIIK_12965at 2799.207 kb on - strand, within OKGIIK_12965at 2799.224 kb on + strand, within OKGIIK_12965at 2799.224 kb on + strand, within OKGIIK_12965at 2799.224 kb on + strand, within OKGIIK_12965at 2799.224 kb on + strand, within OKGIIK_12965at 2799.225 kb on - strand, within OKGIIK_12965at 2799.225 kb on - strand, within OKGIIK_12965at 2799.225 kb on - strand, within OKGIIK_12965at 2799.407 kb on + strand, within OKGIIK_12965at 2799.407 kb on + strand, within OKGIIK_12965at 2799.408 kb on - strand, within OKGIIK_12965at 2799.417 kb on - strand, within OKGIIK_12965at 2799.512 kb on + strand, within OKGIIK_12965at 2799.513 kb on - strand, within OKGIIK_12965at 2799.513 kb on - strand, within OKGIIK_12965at 2799.513 kb on - strand, within OKGIIK_12965at 2799.533 kb on + strand, within OKGIIK_12965at 2799.533 kb on + strand, within OKGIIK_12965at 2799.533 kb on + strand, within OKGIIK_12965at 2799.533 kb on + strand, within OKGIIK_12965at 2799.534 kb on - strand, within OKGIIK_12965at 2799.534 kb on - strand, within OKGIIK_12965at 2799.542 kb on + strand, within OKGIIK_12965at 2799.557 kb on + strand, within OKGIIK_12965at 2799.558 kb on - strand, within OKGIIK_12965at 2799.558 kb on - strand, within OKGIIK_12965at 2799.692 kb on + strand, within OKGIIK_12965at 2799.693 kb on - strand, within OKGIIK_12965at 2799.693 kb on - strand, within OKGIIK_12965at 2799.770 kb on + strand, within OKGIIK_12965at 2799.770 kb on + strand, within OKGIIK_12965at 2800.103 kb on + strandat 2800.103 kb on + strandat 2800.104 kb on - strandat 2800.131 kb on + strandat 2800.144 kb on + strandat 2800.144 kb on + strandat 2800.144 kb on + strandat 2800.144 kb on + strandat 2800.144 kb on + strandat 2800.144 kb on + strandat 2800.144 kb on + strandat 2800.144 kb on + strandat 2800.144 kb on + strandat 2800.144 kb on + strandat 2800.144 kb on + strandat 2800.144 kb on + strandat 2800.144 kb on + strandat 2800.144 kb on + strandat 2800.144 kb on + strandat 2800.144 kb on + strandat 2800.144 kb on + strandat 2800.144 kb on + strandat 2800.144 kb on + strandat 2800.144 kb on + strandat 2800.144 kb on + strandat 2800.144 kb on + strandat 2800.144 kb on + strandat 2800.144 kb on + strandat 2800.144 kb on + strandat 2800.145 kb on - strandat 2800.145 kb on - strandat 2800.145 kb on - strandat 2800.145 kb on - strandat 2800.145 kb on - strandat 2800.145 kb on - strandat 2800.145 kb on - strandat 2800.145 kb on - strandat 2800.145 kb on - strandat 2800.145 kb on - strandat 2800.145 kb on - strandat 2800.145 kb on - strandat 2800.145 kb on - strandat 2800.145 kb on - strandat 2800.145 kb on - strandat 2800.145 kb on - strandat 2800.145 kb on - strandat 2800.145 kb on - strandat 2800.145 kb on - strandat 2800.145 kb on - strandat 2800.145 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM
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2,798,547 + -0.1
2,798,548 - +0.6
2,798,548 - -1.1
2,798,548 - +0.7
2,798,548 - -0.1
2,798,710 + -0.6
2,798,710 + +0.4
2,798,710 + +1.9
2,798,711 - -0.5
2,798,749 - +0.6
2,798,802 - -0.1
2,799,206 + OKGIIK_12965 0.34 -0.1
2,799,207 - OKGIIK_12965 0.34 +0.9
2,799,224 + OKGIIK_12965 0.35 -0.9
2,799,224 + OKGIIK_12965 0.35 -1.1
2,799,224 + OKGIIK_12965 0.35 -0.1
2,799,224 + OKGIIK_12965 0.35 +0.4
2,799,225 - OKGIIK_12965 0.35 -1.4
2,799,225 - OKGIIK_12965 0.35 -0.6
2,799,225 - OKGIIK_12965 0.35 -0.1
2,799,407 + OKGIIK_12965 0.49 -2.0
2,799,407 + OKGIIK_12965 0.49 +0.5
2,799,408 - OKGIIK_12965 0.49 -0.9
2,799,417 - OKGIIK_12965 0.49 +1.5
2,799,512 + OKGIIK_12965 0.56 -0.4
2,799,513 - OKGIIK_12965 0.56 -1.1
2,799,513 - OKGIIK_12965 0.56 -1.9
2,799,513 - OKGIIK_12965 0.56 +0.9
2,799,533 + OKGIIK_12965 0.58 -1.4
2,799,533 + OKGIIK_12965 0.58 -1.1
2,799,533 + OKGIIK_12965 0.58 -0.5
2,799,533 + OKGIIK_12965 0.58 -2.6
2,799,534 - OKGIIK_12965 0.58 -1.3
2,799,534 - OKGIIK_12965 0.58 -0.4
2,799,542 + OKGIIK_12965 0.59 -2.1
2,799,557 + OKGIIK_12965 0.60 -2.2
2,799,558 - OKGIIK_12965 0.60 -0.4
2,799,558 - OKGIIK_12965 0.60 -1.9
2,799,692 + OKGIIK_12965 0.70 -2.4
2,799,693 - OKGIIK_12965 0.70 -0.6
2,799,693 - OKGIIK_12965 0.70 -1.2
2,799,770 + OKGIIK_12965 0.75 +0.1
2,799,770 + OKGIIK_12965 0.75 -0.2
2,800,103 + -0.9
2,800,103 + +1.9
2,800,104 - +1.7
2,800,131 + -1.2
2,800,144 + -1.2
2,800,144 + -0.5
2,800,144 + +1.6
2,800,144 + +1.5
2,800,144 + -0.3
2,800,144 + -0.6
2,800,144 + +0.9
2,800,144 + +1.9
2,800,144 + +1.6
2,800,144 + -1.1
2,800,144 + -0.4
2,800,144 + +0.1
2,800,144 + -0.8
2,800,144 + +0.1
2,800,144 + -0.6
2,800,144 + -0.9
2,800,144 + -0.4
2,800,144 + -1.6
2,800,144 + +0.0
2,800,144 + -0.9
2,800,144 + +0.9
2,800,144 + -0.4
2,800,144 + -0.4
2,800,144 + -1.1
2,800,144 + +0.7
2,800,145 - +1.1
2,800,145 - -1.1
2,800,145 - -1.9
2,800,145 - +0.5
2,800,145 - -2.2
2,800,145 - +1.2
2,800,145 - +0.6
2,800,145 - -0.4
2,800,145 - +0.8
2,800,145 - -1.7
2,800,145 - -0.2
2,800,145 - +0.6
2,800,145 - +0.6
2,800,145 - +0.6
2,800,145 - +1.4
2,800,145 - -1.9
2,800,145 - -0.1
2,800,145 - +1.3
2,800,145 - -0.6
2,800,145 - +0.4
2,800,145 - -0.6

Or see this region's nucleotide sequence