Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_10980

Experiment: R2A_PIPES with Cadmium chloride 128 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntarsB and OKGIIK_10980 are separated by 9 nucleotidesOKGIIK_10980 and OKGIIK_10985 are separated by 161 nucleotidesOKGIIK_10985 and mazG are separated by 55 nucleotides OKGIIK_10975: arsB - Na+/H+ antiporter NhaD or related arsenite permease, at 2,350,781 to 2,351,914 arsB OKGIIK_10980: OKGIIK_10980 - DUF4097 domain-containing protein, at 2,351,924 to 2,352,700 _10980 OKGIIK_10985: OKGIIK_10985 - hypothetical protein, at 2,352,862 to 2,353,332 _10985 OKGIIK_10990: mazG - nucleoside triphosphate pyrophosphohydrolase, at 2,353,388 to 2,354,191 mazG Position (kb) 2351 2352 2353Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2351.456 kb on + strand, within arsBat 2351.457 kb on - strand, within arsBat 2351.457 kb on - strand, within arsBat 2351.457 kb on - strand, within arsBat 2351.457 kb on - strand, within arsBat 2351.457 kb on - strand, within arsBat 2351.604 kb on + strand, within arsBat 2351.605 kb on - strand, within arsBat 2351.605 kb on - strand, within arsBat 2351.605 kb on - strand, within arsBat 2351.651 kb on + strand, within arsBat 2351.651 kb on + strand, within arsBat 2351.652 kb on - strand, within arsBat 2351.652 kb on - strand, within arsBat 2351.652 kb on - strand, within arsBat 2351.652 kb on - strand, within arsBat 2351.652 kb on - strand, within arsBat 2351.841 kb on + strandat 2351.841 kb on + strandat 2351.841 kb on + strandat 2351.841 kb on + strandat 2351.841 kb on + strandat 2351.842 kb on - strandat 2351.888 kb on + strandat 2351.888 kb on + strandat 2351.888 kb on + strandat 2351.888 kb on + strandat 2351.888 kb on + strandat 2351.888 kb on + strandat 2351.888 kb on + strandat 2351.888 kb on + strandat 2351.888 kb on + strandat 2351.888 kb on + strandat 2351.888 kb on + strandat 2351.888 kb on + strandat 2351.889 kb on - strandat 2351.889 kb on - strandat 2351.889 kb on - strandat 2352.378 kb on + strand, within OKGIIK_10980at 2352.379 kb on - strand, within OKGIIK_10980at 2352.379 kb on - strand, within OKGIIK_10980at 2352.379 kb on - strand, within OKGIIK_10980at 2352.379 kb on - strand, within OKGIIK_10980at 2352.379 kb on - strand, within OKGIIK_10980at 2352.379 kb on - strand, within OKGIIK_10980at 2352.379 kb on - strand, within OKGIIK_10980at 2352.630 kb on + strandat 2352.630 kb on + strandat 2352.630 kb on + strandat 2352.631 kb on - strandat 2352.631 kb on - strandat 2352.631 kb on - strandat 2352.631 kb on - strandat 2352.841 kb on + strandat 2352.841 kb on + strandat 2352.841 kb on + strandat 2352.842 kb on - strandat 2352.858 kb on + strandat 2352.858 kb on + strandat 2352.858 kb on + strandat 2352.858 kb on + strandat 2352.858 kb on + strandat 2352.858 kb on + strandat 2352.858 kb on + strandat 2352.859 kb on - strandat 2352.859 kb on - strandat 2352.859 kb on - strandat 2352.859 kb on - strandat 2352.859 kb on - strandat 2352.859 kb on - strandat 2352.859 kb on - strandat 2352.859 kb on - strandat 2352.859 kb on - strandat 2352.859 kb on - strandat 2352.939 kb on + strand, within OKGIIK_10985at 2352.972 kb on - strand, within OKGIIK_10985at 2352.972 kb on - strand, within OKGIIK_10985at 2353.087 kb on + strand, within OKGIIK_10985at 2353.087 kb on + strand, within OKGIIK_10985at 2353.087 kb on + strand, within OKGIIK_10985at 2353.087 kb on + strand, within OKGIIK_10985at 2353.087 kb on + strand, within OKGIIK_10985at 2353.087 kb on + strand, within OKGIIK_10985at 2353.087 kb on + strand, within OKGIIK_10985at 2353.087 kb on + strand, within OKGIIK_10985at 2353.087 kb on + strand, within OKGIIK_10985at 2353.087 kb on + strand, within OKGIIK_10985at 2353.087 kb on + strand, within OKGIIK_10985at 2353.087 kb on + strand, within OKGIIK_10985at 2353.087 kb on + strand, within OKGIIK_10985at 2353.087 kb on + strand, within OKGIIK_10985at 2353.087 kb on + strand, within OKGIIK_10985at 2353.087 kb on + strand, within OKGIIK_10985at 2353.087 kb on + strand, within OKGIIK_10985at 2353.087 kb on + strand, within OKGIIK_10985at 2353.087 kb on + strand, within OKGIIK_10985at 2353.087 kb on + strand, within OKGIIK_10985at 2353.087 kb on + strand, within OKGIIK_10985at 2353.087 kb on + strand, within OKGIIK_10985at 2353.087 kb on + strand, within OKGIIK_10985at 2353.087 kb on + strand, within OKGIIK_10985at 2353.088 kb on - strand, within OKGIIK_10985at 2353.088 kb on - strand, within OKGIIK_10985at 2353.088 kb on - strand, within OKGIIK_10985at 2353.088 kb on - strand, within OKGIIK_10985at 2353.088 kb on - strand, within OKGIIK_10985at 2353.088 kb on - strand, within OKGIIK_10985at 2353.088 kb on - strand, within OKGIIK_10985at 2353.088 kb on - strand, within OKGIIK_10985at 2353.088 kb on - strand, within OKGIIK_10985at 2353.088 kb on - strand, within OKGIIK_10985at 2353.088 kb on - strand, within OKGIIK_10985at 2353.088 kb on - strand, within OKGIIK_10985at 2353.088 kb on - strand, within OKGIIK_10985at 2353.088 kb on - strand, within OKGIIK_10985at 2353.088 kb on - strand, within OKGIIK_10985at 2353.088 kb on - strand, within OKGIIK_10985at 2353.088 kb on - strand, within OKGIIK_10985at 2353.088 kb on - strand, within OKGIIK_10985at 2353.088 kb on - strand, within OKGIIK_10985at 2353.126 kb on + strand, within OKGIIK_10985at 2353.126 kb on + strand, within OKGIIK_10985at 2353.126 kb on + strand, within OKGIIK_10985at 2353.126 kb on + strand, within OKGIIK_10985at 2353.126 kb on + strand, within OKGIIK_10985at 2353.127 kb on - strand, within OKGIIK_10985at 2353.127 kb on - strand, within OKGIIK_10985at 2353.136 kb on + strand, within OKGIIK_10985at 2353.136 kb on + strand, within OKGIIK_10985at 2353.136 kb on + strand, within OKGIIK_10985at 2353.136 kb on + strand, within OKGIIK_10985at 2353.136 kb on + strand, within OKGIIK_10985at 2353.136 kb on + strand, within OKGIIK_10985at 2353.136 kb on + strand, within OKGIIK_10985at 2353.136 kb on + strand, within OKGIIK_10985at 2353.137 kb on - strand, within OKGIIK_10985at 2353.137 kb on - strand, within OKGIIK_10985at 2353.137 kb on - strand, within OKGIIK_10985at 2353.137 kb on - strand, within OKGIIK_10985at 2353.137 kb on - strand, within OKGIIK_10985at 2353.137 kb on - strand, within OKGIIK_10985at 2353.137 kb on - strand, within OKGIIK_10985at 2353.171 kb on + strand, within OKGIIK_10985at 2353.171 kb on + strand, within OKGIIK_10985at 2353.171 kb on + strand, within OKGIIK_10985at 2353.171 kb on + strand, within OKGIIK_10985at 2353.171 kb on + strand, within OKGIIK_10985at 2353.171 kb on + strand, within OKGIIK_10985at 2353.171 kb on + strand, within OKGIIK_10985at 2353.171 kb on + strand, within OKGIIK_10985at 2353.171 kb on + strand, within OKGIIK_10985at 2353.171 kb on + strand, within OKGIIK_10985at 2353.171 kb on + strand, within OKGIIK_10985at 2353.171 kb on + strand, within OKGIIK_10985at 2353.171 kb on + strand, within OKGIIK_10985at 2353.171 kb on + strand, within OKGIIK_10985at 2353.171 kb on + strand, within OKGIIK_10985at 2353.171 kb on + strand, within OKGIIK_10985at 2353.171 kb on + strand, within OKGIIK_10985at 2353.171 kb on + strand, within OKGIIK_10985at 2353.172 kb on - strand, within OKGIIK_10985at 2353.172 kb on - strand, within OKGIIK_10985at 2353.172 kb on - strand, within OKGIIK_10985at 2353.172 kb on - strand, within OKGIIK_10985at 2353.172 kb on - strand, within OKGIIK_10985at 2353.172 kb on - strand, within OKGIIK_10985at 2353.172 kb on - strand, within OKGIIK_10985at 2353.172 kb on - strand, within OKGIIK_10985at 2353.172 kb on - strand, within OKGIIK_10985at 2353.172 kb on - strand, within OKGIIK_10985at 2353.172 kb on - strand, within OKGIIK_10985at 2353.172 kb on - strand, within OKGIIK_10985at 2353.172 kb on - strand, within OKGIIK_10985at 2353.172 kb on - strand, within OKGIIK_10985at 2353.172 kb on - strand, within OKGIIK_10985at 2353.177 kb on + strand, within OKGIIK_10985at 2353.177 kb on + strand, within OKGIIK_10985at 2353.178 kb on - strand, within OKGIIK_10985at 2353.178 kb on - strand, within OKGIIK_10985at 2353.178 kb on - strand, within OKGIIK_10985at 2353.178 kb on - strand, within OKGIIK_10985at 2353.178 kb on - strand, within OKGIIK_10985at 2353.178 kb on - strand, within OKGIIK_10985at 2353.178 kb on - strand, within OKGIIK_10985at 2353.178 kb on - strand, within OKGIIK_10985at 2353.330 kb on + strandat 2353.330 kb on + strandat 2353.330 kb on + strandat 2353.330 kb on + strandat 2353.330 kb on + strandat 2353.330 kb on + strandat 2353.331 kb on - strandat 2353.331 kb on - strandat 2353.331 kb on - strandat 2353.331 kb on - strandat 2353.331 kb on - strandat 2353.389 kb on + strandat 2353.389 kb on + strandat 2353.389 kb on + strandat 2353.390 kb on - strandat 2353.390 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM
remove
2,351,456 + arsB OKGIIK_10975 0.60 +0.2
2,351,457 - arsB OKGIIK_10975 0.60 +1.0
2,351,457 - arsB OKGIIK_10975 0.60 +0.4
2,351,457 - arsB OKGIIK_10975 0.60 -0.6
2,351,457 - arsB OKGIIK_10975 0.60 -0.4
2,351,457 - arsB OKGIIK_10975 0.60 +0.1
2,351,604 + arsB OKGIIK_10975 0.73 -0.8
2,351,605 - arsB OKGIIK_10975 0.73 +0.2
2,351,605 - arsB OKGIIK_10975 0.73 -1.1
2,351,605 - arsB OKGIIK_10975 0.73 -0.8
2,351,651 + arsB OKGIIK_10975 0.77 +0.9
2,351,651 + arsB OKGIIK_10975 0.77 -0.5
2,351,652 - arsB OKGIIK_10975 0.77 +0.1
2,351,652 - arsB OKGIIK_10975 0.77 -2.8
2,351,652 - arsB OKGIIK_10975 0.77 -1.8
2,351,652 - arsB OKGIIK_10975 0.77 -1.9
2,351,652 - arsB OKGIIK_10975 0.77 +0.6
2,351,841 + -0.6
2,351,841 + +1.4
2,351,841 + +0.3
2,351,841 + +0.5
2,351,841 + -0.2
2,351,842 - -0.5
2,351,888 + -1.5
2,351,888 + +0.2
2,351,888 + -0.8
2,351,888 + -0.1
2,351,888 + -0.6
2,351,888 + -0.3
2,351,888 + -0.3
2,351,888 + +1.0
2,351,888 + +0.9
2,351,888 + -0.1
2,351,888 + +0.2
2,351,888 + -0.6
2,351,889 - -0.8
2,351,889 - +1.5
2,351,889 - -0.1
2,352,378 + OKGIIK_10980 0.58 +0.4
2,352,379 - OKGIIK_10980 0.59 -2.3
2,352,379 - OKGIIK_10980 0.59 -0.1
2,352,379 - OKGIIK_10980 0.59 -1.3
2,352,379 - OKGIIK_10980 0.59 +0.9
2,352,379 - OKGIIK_10980 0.59 -0.1
2,352,379 - OKGIIK_10980 0.59 +0.2
2,352,379 - OKGIIK_10980 0.59 -0.1
2,352,630 + +0.2
2,352,630 + -0.4
2,352,630 + -1.5
2,352,631 - -0.1
2,352,631 - -1.5
2,352,631 - -1.5
2,352,631 - -1.5
2,352,841 + -0.4
2,352,841 + -0.1
2,352,841 + -1.7
2,352,842 - +0.2
2,352,858 + -2.2
2,352,858 + +0.2
2,352,858 + +0.4
2,352,858 + +1.4
2,352,858 + -0.1
2,352,858 + -0.4
2,352,858 + -1.1
2,352,859 - +0.4
2,352,859 - +0.0
2,352,859 - -0.9
2,352,859 - -0.4
2,352,859 - +0.2
2,352,859 - -0.4
2,352,859 - +0.2
2,352,859 - +0.7
2,352,859 - +0.8
2,352,859 - -0.6
2,352,939 + OKGIIK_10985 0.16 -0.4
2,352,972 - OKGIIK_10985 0.23 +0.2
2,352,972 - OKGIIK_10985 0.23 +1.0
2,353,087 + OKGIIK_10985 0.48 -0.1
2,353,087 + OKGIIK_10985 0.48 -1.1
2,353,087 + OKGIIK_10985 0.48 +1.6
2,353,087 + OKGIIK_10985 0.48 +0.0
2,353,087 + OKGIIK_10985 0.48 +1.3
2,353,087 + OKGIIK_10985 0.48 +1.5
2,353,087 + OKGIIK_10985 0.48 -0.5
2,353,087 + OKGIIK_10985 0.48 -0.8
2,353,087 + OKGIIK_10985 0.48 +0.4
2,353,087 + OKGIIK_10985 0.48 -0.7
2,353,087 + OKGIIK_10985 0.48 -0.2
2,353,087 + OKGIIK_10985 0.48 -0.4
2,353,087 + OKGIIK_10985 0.48 +0.9
2,353,087 + OKGIIK_10985 0.48 -0.6
2,353,087 + OKGIIK_10985 0.48 -0.8
2,353,087 + OKGIIK_10985 0.48 +0.5
2,353,087 + OKGIIK_10985 0.48 -0.8
2,353,087 + OKGIIK_10985 0.48 +1.6
2,353,087 + OKGIIK_10985 0.48 +0.2
2,353,087 + OKGIIK_10985 0.48 +0.2
2,353,087 + OKGIIK_10985 0.48 +1.6
2,353,087 + OKGIIK_10985 0.48 -0.6
2,353,087 + OKGIIK_10985 0.48 -1.5
2,353,087 + OKGIIK_10985 0.48 +2.8
2,353,088 - OKGIIK_10985 0.48 +0.6
2,353,088 - OKGIIK_10985 0.48 +0.5
2,353,088 - OKGIIK_10985 0.48 -0.6
2,353,088 - OKGIIK_10985 0.48 -1.0
2,353,088 - OKGIIK_10985 0.48 +1.0
2,353,088 - OKGIIK_10985 0.48 +1.4
2,353,088 - OKGIIK_10985 0.48 -0.8
2,353,088 - OKGIIK_10985 0.48 -0.4
2,353,088 - OKGIIK_10985 0.48 -1.9
2,353,088 - OKGIIK_10985 0.48 -0.2
2,353,088 - OKGIIK_10985 0.48 -0.8
2,353,088 - OKGIIK_10985 0.48 -0.6
2,353,088 - OKGIIK_10985 0.48 +0.3
2,353,088 - OKGIIK_10985 0.48 +0.0
2,353,088 - OKGIIK_10985 0.48 +0.5
2,353,088 - OKGIIK_10985 0.48 +0.8
2,353,088 - OKGIIK_10985 0.48 +0.2
2,353,088 - OKGIIK_10985 0.48 +0.4
2,353,088 - OKGIIK_10985 0.48 +0.2
2,353,126 + OKGIIK_10985 0.56 -2.1
2,353,126 + OKGIIK_10985 0.56 +1.3
2,353,126 + OKGIIK_10985 0.56 +1.0
2,353,126 + OKGIIK_10985 0.56 -0.2
2,353,126 + OKGIIK_10985 0.56 +1.8
2,353,127 - OKGIIK_10985 0.56 -2.2
2,353,127 - OKGIIK_10985 0.56 -0.2
2,353,136 + OKGIIK_10985 0.58 +0.4
2,353,136 + OKGIIK_10985 0.58 +0.8
2,353,136 + OKGIIK_10985 0.58 +0.2
2,353,136 + OKGIIK_10985 0.58 +0.4
2,353,136 + OKGIIK_10985 0.58 +0.0
2,353,136 + OKGIIK_10985 0.58 -2.0
2,353,136 + OKGIIK_10985 0.58 -1.0
2,353,136 + OKGIIK_10985 0.58 +0.2
2,353,137 - OKGIIK_10985 0.58 -0.4
2,353,137 - OKGIIK_10985 0.58 -0.8
2,353,137 - OKGIIK_10985 0.58 -0.1
2,353,137 - OKGIIK_10985 0.58 +0.1
2,353,137 - OKGIIK_10985 0.58 +1.0
2,353,137 - OKGIIK_10985 0.58 +0.9
2,353,137 - OKGIIK_10985 0.58 -0.4
2,353,171 + OKGIIK_10985 0.66 +0.6
2,353,171 + OKGIIK_10985 0.66 +0.3
2,353,171 + OKGIIK_10985 0.66 -0.6
2,353,171 + OKGIIK_10985 0.66 +0.3
2,353,171 + OKGIIK_10985 0.66 -0.6
2,353,171 + OKGIIK_10985 0.66 -1.6
2,353,171 + OKGIIK_10985 0.66 -0.8
2,353,171 + OKGIIK_10985 0.66 -1.7
2,353,171 + OKGIIK_10985 0.66 +0.9
2,353,171 + OKGIIK_10985 0.66 -0.8
2,353,171 + OKGIIK_10985 0.66 -2.2
2,353,171 + OKGIIK_10985 0.66 +1.2
2,353,171 + OKGIIK_10985 0.66 -1.0
2,353,171 + OKGIIK_10985 0.66 -1.1
2,353,171 + OKGIIK_10985 0.66 -1.0
2,353,171 + OKGIIK_10985 0.66 +0.0
2,353,171 + OKGIIK_10985 0.66 -0.5
2,353,171 + OKGIIK_10985 0.66 +0.8
2,353,172 - OKGIIK_10985 0.66 +0.2
2,353,172 - OKGIIK_10985 0.66 +1.0
2,353,172 - OKGIIK_10985 0.66 +2.4
2,353,172 - OKGIIK_10985 0.66 -0.4
2,353,172 - OKGIIK_10985 0.66 -0.4
2,353,172 - OKGIIK_10985 0.66 +0.9
2,353,172 - OKGIIK_10985 0.66 +0.3
2,353,172 - OKGIIK_10985 0.66 +0.1
2,353,172 - OKGIIK_10985 0.66 +0.2
2,353,172 - OKGIIK_10985 0.66 +0.8
2,353,172 - OKGIIK_10985 0.66 +1.0
2,353,172 - OKGIIK_10985 0.66 +0.0
2,353,172 - OKGIIK_10985 0.66 -0.8
2,353,172 - OKGIIK_10985 0.66 -2.9
2,353,172 - OKGIIK_10985 0.66 +1.8
2,353,177 + OKGIIK_10985 0.67 -0.4
2,353,177 + OKGIIK_10985 0.67 +1.9
2,353,178 - OKGIIK_10985 0.67 -0.8
2,353,178 - OKGIIK_10985 0.67 -0.5
2,353,178 - OKGIIK_10985 0.67 -1.1
2,353,178 - OKGIIK_10985 0.67 -1.1
2,353,178 - OKGIIK_10985 0.67 +0.2
2,353,178 - OKGIIK_10985 0.67 -0.8
2,353,178 - OKGIIK_10985 0.67 -0.4
2,353,178 - OKGIIK_10985 0.67 -0.4
2,353,330 + +0.2
2,353,330 + +0.3
2,353,330 + -0.1
2,353,330 + -0.4
2,353,330 + -1.5
2,353,330 + +1.2
2,353,331 - -0.7
2,353,331 - -0.8
2,353,331 - -0.3
2,353,331 - +0.2
2,353,331 - +0.6
2,353,389 + -0.0
2,353,389 + +0.9
2,353,389 + +2.0
2,353,390 - +0.6
2,353,390 - -1.4

Or see this region's nucleotide sequence