Experiment: R2A_PIPES with Cadmium chloride 128 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt arsB and OKGIIK_10980 are separated by 9 nucleotides OKGIIK_10980 and OKGIIK_10985 are separated by 161 nucleotides OKGIIK_10985 and mazG are separated by 55 nucleotides
OKGIIK_10975: arsB - Na+/H+ antiporter NhaD or related arsenite permease, at 2,350,781 to 2,351,914
arsB
OKGIIK_10980: OKGIIK_10980 - DUF4097 domain-containing protein, at 2,351,924 to 2,352,700
_10980
OKGIIK_10985: OKGIIK_10985 - hypothetical protein, at 2,352,862 to 2,353,332
_10985
OKGIIK_10990: mazG - nucleoside triphosphate pyrophosphohydrolase, at 2,353,388 to 2,354,191
mazG
Position (kb)
2351
2352
2353 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2351.456 kb on + strand, within arsB at 2351.457 kb on - strand, within arsB at 2351.457 kb on - strand, within arsB at 2351.457 kb on - strand, within arsB at 2351.457 kb on - strand, within arsB at 2351.457 kb on - strand, within arsB at 2351.604 kb on + strand, within arsB at 2351.605 kb on - strand, within arsB at 2351.605 kb on - strand, within arsB at 2351.605 kb on - strand, within arsB at 2351.651 kb on + strand, within arsB at 2351.651 kb on + strand, within arsB at 2351.652 kb on - strand, within arsB at 2351.652 kb on - strand, within arsB at 2351.652 kb on - strand, within arsB at 2351.652 kb on - strand, within arsB at 2351.652 kb on - strand, within arsB at 2351.841 kb on + strand at 2351.841 kb on + strand at 2351.841 kb on + strand at 2351.841 kb on + strand at 2351.841 kb on + strand at 2351.842 kb on - strand at 2351.888 kb on + strand at 2351.888 kb on + strand at 2351.888 kb on + strand at 2351.888 kb on + strand at 2351.888 kb on + strand at 2351.888 kb on + strand at 2351.888 kb on + strand at 2351.888 kb on + strand at 2351.888 kb on + strand at 2351.888 kb on + strand at 2351.888 kb on + strand at 2351.888 kb on + strand at 2351.889 kb on - strand at 2351.889 kb on - strand at 2351.889 kb on - strand at 2352.378 kb on + strand, within OKGIIK_10980 at 2352.379 kb on - strand, within OKGIIK_10980 at 2352.379 kb on - strand, within OKGIIK_10980 at 2352.379 kb on - strand, within OKGIIK_10980 at 2352.379 kb on - strand, within OKGIIK_10980 at 2352.379 kb on - strand, within OKGIIK_10980 at 2352.379 kb on - strand, within OKGIIK_10980 at 2352.379 kb on - strand, within OKGIIK_10980 at 2352.630 kb on + strand at 2352.630 kb on + strand at 2352.630 kb on + strand at 2352.631 kb on - strand at 2352.631 kb on - strand at 2352.631 kb on - strand at 2352.631 kb on - strand at 2352.841 kb on + strand at 2352.841 kb on + strand at 2352.841 kb on + strand at 2352.842 kb on - strand at 2352.858 kb on + strand at 2352.858 kb on + strand at 2352.858 kb on + strand at 2352.858 kb on + strand at 2352.858 kb on + strand at 2352.858 kb on + strand at 2352.858 kb on + strand at 2352.859 kb on - strand at 2352.859 kb on - strand at 2352.859 kb on - strand at 2352.859 kb on - strand at 2352.859 kb on - strand at 2352.859 kb on - strand at 2352.859 kb on - strand at 2352.859 kb on - strand at 2352.859 kb on - strand at 2352.859 kb on - strand at 2352.939 kb on + strand, within OKGIIK_10985 at 2352.972 kb on - strand, within OKGIIK_10985 at 2352.972 kb on - strand, within OKGIIK_10985 at 2353.087 kb on + strand, within OKGIIK_10985 at 2353.087 kb on + strand, within OKGIIK_10985 at 2353.087 kb on + strand, within OKGIIK_10985 at 2353.087 kb on + strand, within OKGIIK_10985 at 2353.087 kb on + strand, within OKGIIK_10985 at 2353.087 kb on + strand, within OKGIIK_10985 at 2353.087 kb on + strand, within OKGIIK_10985 at 2353.087 kb on + strand, within OKGIIK_10985 at 2353.087 kb on + strand, within OKGIIK_10985 at 2353.087 kb on + strand, within OKGIIK_10985 at 2353.087 kb on + strand, within OKGIIK_10985 at 2353.087 kb on + strand, within OKGIIK_10985 at 2353.087 kb on + strand, within OKGIIK_10985 at 2353.087 kb on + strand, within OKGIIK_10985 at 2353.087 kb on + strand, within OKGIIK_10985 at 2353.087 kb on + strand, within OKGIIK_10985 at 2353.087 kb on + strand, within OKGIIK_10985 at 2353.087 kb on + strand, within OKGIIK_10985 at 2353.087 kb on + strand, within OKGIIK_10985 at 2353.087 kb on + strand, within OKGIIK_10985 at 2353.087 kb on + strand, within OKGIIK_10985 at 2353.087 kb on + strand, within OKGIIK_10985 at 2353.087 kb on + strand, within OKGIIK_10985 at 2353.087 kb on + strand, within OKGIIK_10985 at 2353.088 kb on - strand, within OKGIIK_10985 at 2353.088 kb on - strand, within OKGIIK_10985 at 2353.088 kb on - strand, within OKGIIK_10985 at 2353.088 kb on - strand, within OKGIIK_10985 at 2353.088 kb on - strand, within OKGIIK_10985 at 2353.088 kb on - strand, within OKGIIK_10985 at 2353.088 kb on - strand, within OKGIIK_10985 at 2353.088 kb on - strand, within OKGIIK_10985 at 2353.088 kb on - strand, within OKGIIK_10985 at 2353.088 kb on - strand, within OKGIIK_10985 at 2353.088 kb on - strand, within OKGIIK_10985 at 2353.088 kb on - strand, within OKGIIK_10985 at 2353.088 kb on - strand, within OKGIIK_10985 at 2353.088 kb on - strand, within OKGIIK_10985 at 2353.088 kb on - strand, within OKGIIK_10985 at 2353.088 kb on - strand, within OKGIIK_10985 at 2353.088 kb on - strand, within OKGIIK_10985 at 2353.088 kb on - strand, within OKGIIK_10985 at 2353.088 kb on - strand, within OKGIIK_10985 at 2353.126 kb on + strand, within OKGIIK_10985 at 2353.126 kb on + strand, within OKGIIK_10985 at 2353.126 kb on + strand, within OKGIIK_10985 at 2353.126 kb on + strand, within OKGIIK_10985 at 2353.126 kb on + strand, within OKGIIK_10985 at 2353.127 kb on - strand, within OKGIIK_10985 at 2353.127 kb on - strand, within OKGIIK_10985 at 2353.136 kb on + strand, within OKGIIK_10985 at 2353.136 kb on + strand, within OKGIIK_10985 at 2353.136 kb on + strand, within OKGIIK_10985 at 2353.136 kb on + strand, within OKGIIK_10985 at 2353.136 kb on + strand, within OKGIIK_10985 at 2353.136 kb on + strand, within OKGIIK_10985 at 2353.136 kb on + strand, within OKGIIK_10985 at 2353.136 kb on + strand, within OKGIIK_10985 at 2353.137 kb on - strand, within OKGIIK_10985 at 2353.137 kb on - strand, within OKGIIK_10985 at 2353.137 kb on - strand, within OKGIIK_10985 at 2353.137 kb on - strand, within OKGIIK_10985 at 2353.137 kb on - strand, within OKGIIK_10985 at 2353.137 kb on - strand, within OKGIIK_10985 at 2353.137 kb on - strand, within OKGIIK_10985 at 2353.171 kb on + strand, within OKGIIK_10985 at 2353.171 kb on + strand, within OKGIIK_10985 at 2353.171 kb on + strand, within OKGIIK_10985 at 2353.171 kb on + strand, within OKGIIK_10985 at 2353.171 kb on + strand, within OKGIIK_10985 at 2353.171 kb on + strand, within OKGIIK_10985 at 2353.171 kb on + strand, within OKGIIK_10985 at 2353.171 kb on + strand, within OKGIIK_10985 at 2353.171 kb on + strand, within OKGIIK_10985 at 2353.171 kb on + strand, within OKGIIK_10985 at 2353.171 kb on + strand, within OKGIIK_10985 at 2353.171 kb on + strand, within OKGIIK_10985 at 2353.171 kb on + strand, within OKGIIK_10985 at 2353.171 kb on + strand, within OKGIIK_10985 at 2353.171 kb on + strand, within OKGIIK_10985 at 2353.171 kb on + strand, within OKGIIK_10985 at 2353.171 kb on + strand, within OKGIIK_10985 at 2353.171 kb on + strand, within OKGIIK_10985 at 2353.172 kb on - strand, within OKGIIK_10985 at 2353.172 kb on - strand, within OKGIIK_10985 at 2353.172 kb on - strand, within OKGIIK_10985 at 2353.172 kb on - strand, within OKGIIK_10985 at 2353.172 kb on - strand, within OKGIIK_10985 at 2353.172 kb on - strand, within OKGIIK_10985 at 2353.172 kb on - strand, within OKGIIK_10985 at 2353.172 kb on - strand, within OKGIIK_10985 at 2353.172 kb on - strand, within OKGIIK_10985 at 2353.172 kb on - strand, within OKGIIK_10985 at 2353.172 kb on - strand, within OKGIIK_10985 at 2353.172 kb on - strand, within OKGIIK_10985 at 2353.172 kb on - strand, within OKGIIK_10985 at 2353.172 kb on - strand, within OKGIIK_10985 at 2353.172 kb on - strand, within OKGIIK_10985 at 2353.177 kb on + strand, within OKGIIK_10985 at 2353.177 kb on + strand, within OKGIIK_10985 at 2353.178 kb on - strand, within OKGIIK_10985 at 2353.178 kb on - strand, within OKGIIK_10985 at 2353.178 kb on - strand, within OKGIIK_10985 at 2353.178 kb on - strand, within OKGIIK_10985 at 2353.178 kb on - strand, within OKGIIK_10985 at 2353.178 kb on - strand, within OKGIIK_10985 at 2353.178 kb on - strand, within OKGIIK_10985 at 2353.178 kb on - strand, within OKGIIK_10985 at 2353.330 kb on + strand at 2353.330 kb on + strand at 2353.330 kb on + strand at 2353.330 kb on + strand at 2353.330 kb on + strand at 2353.330 kb on + strand at 2353.331 kb on - strand at 2353.331 kb on - strand at 2353.331 kb on - strand at 2353.331 kb on - strand at 2353.331 kb on - strand at 2353.389 kb on + strand at 2353.389 kb on + strand at 2353.389 kb on + strand at 2353.390 kb on - strand at 2353.390 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM remove 2,351,456 + arsB OKGIIK_10975 0.60 +0.2 2,351,457 - arsB OKGIIK_10975 0.60 +1.0 2,351,457 - arsB OKGIIK_10975 0.60 +0.4 2,351,457 - arsB OKGIIK_10975 0.60 -0.6 2,351,457 - arsB OKGIIK_10975 0.60 -0.4 2,351,457 - arsB OKGIIK_10975 0.60 +0.1 2,351,604 + arsB OKGIIK_10975 0.73 -0.8 2,351,605 - arsB OKGIIK_10975 0.73 +0.2 2,351,605 - arsB OKGIIK_10975 0.73 -1.1 2,351,605 - arsB OKGIIK_10975 0.73 -0.8 2,351,651 + arsB OKGIIK_10975 0.77 +0.9 2,351,651 + arsB OKGIIK_10975 0.77 -0.5 2,351,652 - arsB OKGIIK_10975 0.77 +0.1 2,351,652 - arsB OKGIIK_10975 0.77 -2.8 2,351,652 - arsB OKGIIK_10975 0.77 -1.8 2,351,652 - arsB OKGIIK_10975 0.77 -1.9 2,351,652 - arsB OKGIIK_10975 0.77 +0.6 2,351,841 + -0.6 2,351,841 + +1.4 2,351,841 + +0.3 2,351,841 + +0.5 2,351,841 + -0.2 2,351,842 - -0.5 2,351,888 + -1.5 2,351,888 + +0.2 2,351,888 + -0.8 2,351,888 + -0.1 2,351,888 + -0.6 2,351,888 + -0.3 2,351,888 + -0.3 2,351,888 + +1.0 2,351,888 + +0.9 2,351,888 + -0.1 2,351,888 + +0.2 2,351,888 + -0.6 2,351,889 - -0.8 2,351,889 - +1.5 2,351,889 - -0.1 2,352,378 + OKGIIK_10980 0.58 +0.4 2,352,379 - OKGIIK_10980 0.59 -2.3 2,352,379 - OKGIIK_10980 0.59 -0.1 2,352,379 - OKGIIK_10980 0.59 -1.3 2,352,379 - OKGIIK_10980 0.59 +0.9 2,352,379 - OKGIIK_10980 0.59 -0.1 2,352,379 - OKGIIK_10980 0.59 +0.2 2,352,379 - OKGIIK_10980 0.59 -0.1 2,352,630 + +0.2 2,352,630 + -0.4 2,352,630 + -1.5 2,352,631 - -0.1 2,352,631 - -1.5 2,352,631 - -1.5 2,352,631 - -1.5 2,352,841 + -0.4 2,352,841 + -0.1 2,352,841 + -1.7 2,352,842 - +0.2 2,352,858 + -2.2 2,352,858 + +0.2 2,352,858 + +0.4 2,352,858 + +1.4 2,352,858 + -0.1 2,352,858 + -0.4 2,352,858 + -1.1 2,352,859 - +0.4 2,352,859 - +0.0 2,352,859 - -0.9 2,352,859 - -0.4 2,352,859 - +0.2 2,352,859 - -0.4 2,352,859 - +0.2 2,352,859 - +0.7 2,352,859 - +0.8 2,352,859 - -0.6 2,352,939 + OKGIIK_10985 0.16 -0.4 2,352,972 - OKGIIK_10985 0.23 +0.2 2,352,972 - OKGIIK_10985 0.23 +1.0 2,353,087 + OKGIIK_10985 0.48 -0.1 2,353,087 + OKGIIK_10985 0.48 -1.1 2,353,087 + OKGIIK_10985 0.48 +1.6 2,353,087 + OKGIIK_10985 0.48 +0.0 2,353,087 + OKGIIK_10985 0.48 +1.3 2,353,087 + OKGIIK_10985 0.48 +1.5 2,353,087 + OKGIIK_10985 0.48 -0.5 2,353,087 + OKGIIK_10985 0.48 -0.8 2,353,087 + OKGIIK_10985 0.48 +0.4 2,353,087 + OKGIIK_10985 0.48 -0.7 2,353,087 + OKGIIK_10985 0.48 -0.2 2,353,087 + OKGIIK_10985 0.48 -0.4 2,353,087 + OKGIIK_10985 0.48 +0.9 2,353,087 + OKGIIK_10985 0.48 -0.6 2,353,087 + OKGIIK_10985 0.48 -0.8 2,353,087 + OKGIIK_10985 0.48 +0.5 2,353,087 + OKGIIK_10985 0.48 -0.8 2,353,087 + OKGIIK_10985 0.48 +1.6 2,353,087 + OKGIIK_10985 0.48 +0.2 2,353,087 + OKGIIK_10985 0.48 +0.2 2,353,087 + OKGIIK_10985 0.48 +1.6 2,353,087 + OKGIIK_10985 0.48 -0.6 2,353,087 + OKGIIK_10985 0.48 -1.5 2,353,087 + OKGIIK_10985 0.48 +2.8 2,353,088 - OKGIIK_10985 0.48 +0.6 2,353,088 - OKGIIK_10985 0.48 +0.5 2,353,088 - OKGIIK_10985 0.48 -0.6 2,353,088 - OKGIIK_10985 0.48 -1.0 2,353,088 - OKGIIK_10985 0.48 +1.0 2,353,088 - OKGIIK_10985 0.48 +1.4 2,353,088 - OKGIIK_10985 0.48 -0.8 2,353,088 - OKGIIK_10985 0.48 -0.4 2,353,088 - OKGIIK_10985 0.48 -1.9 2,353,088 - OKGIIK_10985 0.48 -0.2 2,353,088 - OKGIIK_10985 0.48 -0.8 2,353,088 - OKGIIK_10985 0.48 -0.6 2,353,088 - OKGIIK_10985 0.48 +0.3 2,353,088 - OKGIIK_10985 0.48 +0.0 2,353,088 - OKGIIK_10985 0.48 +0.5 2,353,088 - OKGIIK_10985 0.48 +0.8 2,353,088 - OKGIIK_10985 0.48 +0.2 2,353,088 - OKGIIK_10985 0.48 +0.4 2,353,088 - OKGIIK_10985 0.48 +0.2 2,353,126 + OKGIIK_10985 0.56 -2.1 2,353,126 + OKGIIK_10985 0.56 +1.3 2,353,126 + OKGIIK_10985 0.56 +1.0 2,353,126 + OKGIIK_10985 0.56 -0.2 2,353,126 + OKGIIK_10985 0.56 +1.8 2,353,127 - OKGIIK_10985 0.56 -2.2 2,353,127 - OKGIIK_10985 0.56 -0.2 2,353,136 + OKGIIK_10985 0.58 +0.4 2,353,136 + OKGIIK_10985 0.58 +0.8 2,353,136 + OKGIIK_10985 0.58 +0.2 2,353,136 + OKGIIK_10985 0.58 +0.4 2,353,136 + OKGIIK_10985 0.58 +0.0 2,353,136 + OKGIIK_10985 0.58 -2.0 2,353,136 + OKGIIK_10985 0.58 -1.0 2,353,136 + OKGIIK_10985 0.58 +0.2 2,353,137 - OKGIIK_10985 0.58 -0.4 2,353,137 - OKGIIK_10985 0.58 -0.8 2,353,137 - OKGIIK_10985 0.58 -0.1 2,353,137 - OKGIIK_10985 0.58 +0.1 2,353,137 - OKGIIK_10985 0.58 +1.0 2,353,137 - OKGIIK_10985 0.58 +0.9 2,353,137 - OKGIIK_10985 0.58 -0.4 2,353,171 + OKGIIK_10985 0.66 +0.6 2,353,171 + OKGIIK_10985 0.66 +0.3 2,353,171 + OKGIIK_10985 0.66 -0.6 2,353,171 + OKGIIK_10985 0.66 +0.3 2,353,171 + OKGIIK_10985 0.66 -0.6 2,353,171 + OKGIIK_10985 0.66 -1.6 2,353,171 + OKGIIK_10985 0.66 -0.8 2,353,171 + OKGIIK_10985 0.66 -1.7 2,353,171 + OKGIIK_10985 0.66 +0.9 2,353,171 + OKGIIK_10985 0.66 -0.8 2,353,171 + OKGIIK_10985 0.66 -2.2 2,353,171 + OKGIIK_10985 0.66 +1.2 2,353,171 + OKGIIK_10985 0.66 -1.0 2,353,171 + OKGIIK_10985 0.66 -1.1 2,353,171 + OKGIIK_10985 0.66 -1.0 2,353,171 + OKGIIK_10985 0.66 +0.0 2,353,171 + OKGIIK_10985 0.66 -0.5 2,353,171 + OKGIIK_10985 0.66 +0.8 2,353,172 - OKGIIK_10985 0.66 +0.2 2,353,172 - OKGIIK_10985 0.66 +1.0 2,353,172 - OKGIIK_10985 0.66 +2.4 2,353,172 - OKGIIK_10985 0.66 -0.4 2,353,172 - OKGIIK_10985 0.66 -0.4 2,353,172 - OKGIIK_10985 0.66 +0.9 2,353,172 - OKGIIK_10985 0.66 +0.3 2,353,172 - OKGIIK_10985 0.66 +0.1 2,353,172 - OKGIIK_10985 0.66 +0.2 2,353,172 - OKGIIK_10985 0.66 +0.8 2,353,172 - OKGIIK_10985 0.66 +1.0 2,353,172 - OKGIIK_10985 0.66 +0.0 2,353,172 - OKGIIK_10985 0.66 -0.8 2,353,172 - OKGIIK_10985 0.66 -2.9 2,353,172 - OKGIIK_10985 0.66 +1.8 2,353,177 + OKGIIK_10985 0.67 -0.4 2,353,177 + OKGIIK_10985 0.67 +1.9 2,353,178 - OKGIIK_10985 0.67 -0.8 2,353,178 - OKGIIK_10985 0.67 -0.5 2,353,178 - OKGIIK_10985 0.67 -1.1 2,353,178 - OKGIIK_10985 0.67 -1.1 2,353,178 - OKGIIK_10985 0.67 +0.2 2,353,178 - OKGIIK_10985 0.67 -0.8 2,353,178 - OKGIIK_10985 0.67 -0.4 2,353,178 - OKGIIK_10985 0.67 -0.4 2,353,330 + +0.2 2,353,330 + +0.3 2,353,330 + -0.1 2,353,330 + -0.4 2,353,330 + -1.5 2,353,330 + +1.2 2,353,331 - -0.7 2,353,331 - -0.8 2,353,331 - -0.3 2,353,331 - +0.2 2,353,331 - +0.6 2,353,389 + -0.0 2,353,389 + +0.9 2,353,389 + +2.0 2,353,390 - +0.6 2,353,390 - -1.4
Or see this region's nucleotide sequence