Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_10180

Experiment: R2A_PIPES with Cadmium chloride 128 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrseP and bamA are separated by 198 nucleotidesbamA and lpxD are separated by 121 nucleotides OKGIIK_10175: rseP - RIP metalloprotease RseP, at 2,193,123 to 2,194,469 rseP OKGIIK_10180: bamA - outer membrane protein assembly factor BamA, at 2,194,668 to 2,197,085 bamA OKGIIK_10185: lpxD - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 2,197,207 to 2,198,235 lpxD Position (kb) 2194 2195 2196 2197 2198Strain fitness (log2 ratio) -1 0 1at 2194.068 kb on + strand, within rsePat 2194.329 kb on + strand, within rsePat 2194.329 kb on + strand, within rsePat 2194.332 kb on + strand, within rsePat 2194.392 kb on + strandat 2194.392 kb on + strandat 2194.437 kb on + strandat 2194.437 kb on + strandat 2194.437 kb on + strandat 2194.437 kb on + strandat 2194.437 kb on + strandat 2194.470 kb on + strandat 2197.178 kb on + strandat 2197.178 kb on + strandat 2197.178 kb on + strandat 2197.178 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM
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2,194,068 + rseP OKGIIK_10175 0.70 -1.2
2,194,329 + rseP OKGIIK_10175 0.90 -0.6
2,194,329 + rseP OKGIIK_10175 0.90 +0.2
2,194,332 + rseP OKGIIK_10175 0.90 -0.9
2,194,392 + -0.2
2,194,392 + +0.1
2,194,437 + -0.1
2,194,437 + -0.4
2,194,437 + -1.4
2,194,437 + -0.8
2,194,437 + -1.1
2,194,470 + +1.0
2,197,178 + -1.0
2,197,178 + -0.1
2,197,178 + +1.2
2,197,178 + +0.4

Or see this region's nucleotide sequence