Experiment: R2A_PIPES with Cadmium chloride 128 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dxr and rseP are separated by 36 nucleotides rseP and bamA are separated by 198 nucleotides
OKGIIK_10170: dxr - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 2,191,911 to 2,193,086
dxr
OKGIIK_10175: rseP - RIP metalloprotease RseP, at 2,193,123 to 2,194,469
rseP
OKGIIK_10180: bamA - outer membrane protein assembly factor BamA, at 2,194,668 to 2,197,085
bamA
Position (kb)
2193
2194
2195 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2193.087 kb on + strand at 2193.087 kb on + strand at 2193.087 kb on + strand at 2193.087 kb on + strand at 2193.087 kb on + strand at 2193.087 kb on + strand at 2193.087 kb on + strand at 2193.088 kb on - strand at 2193.088 kb on - strand at 2193.088 kb on - strand at 2193.088 kb on - strand at 2193.088 kb on - strand at 2193.088 kb on - strand at 2193.088 kb on - strand at 2193.117 kb on + strand at 2193.117 kb on + strand at 2193.117 kb on + strand at 2193.117 kb on + strand at 2193.117 kb on + strand at 2193.117 kb on + strand at 2193.117 kb on + strand at 2193.117 kb on + strand at 2193.117 kb on + strand at 2193.117 kb on + strand at 2193.117 kb on + strand at 2193.117 kb on + strand at 2193.117 kb on + strand at 2193.117 kb on + strand at 2193.117 kb on + strand at 2193.117 kb on + strand at 2193.118 kb on - strand at 2193.118 kb on - strand at 2193.118 kb on - strand at 2193.118 kb on - strand at 2194.068 kb on + strand, within rseP at 2194.329 kb on + strand, within rseP at 2194.329 kb on + strand, within rseP at 2194.332 kb on + strand, within rseP at 2194.392 kb on + strand at 2194.392 kb on + strand at 2194.437 kb on + strand at 2194.437 kb on + strand at 2194.437 kb on + strand at 2194.437 kb on + strand at 2194.437 kb on + strand at 2194.470 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM remove 2,193,087 + -0.1 2,193,087 + +1.0 2,193,087 + -0.8 2,193,087 + +0.1 2,193,087 + -0.9 2,193,087 + -0.6 2,193,087 + -1.1 2,193,088 - -0.5 2,193,088 - -1.8 2,193,088 - +1.2 2,193,088 - +0.1 2,193,088 - -0.2 2,193,088 - -0.5 2,193,088 - -0.8 2,193,117 + +1.2 2,193,117 + +0.2 2,193,117 + -0.4 2,193,117 + -1.2 2,193,117 + +0.9 2,193,117 + +1.0 2,193,117 + +1.6 2,193,117 + -0.6 2,193,117 + +1.1 2,193,117 + +0.9 2,193,117 + -0.3 2,193,117 + -0.4 2,193,117 + -1.8 2,193,117 + -1.5 2,193,117 + +2.2 2,193,117 + +1.8 2,193,118 - +0.2 2,193,118 - +1.6 2,193,118 - -1.8 2,193,118 - +0.1 2,194,068 + rseP OKGIIK_10175 0.70 -1.2 2,194,329 + rseP OKGIIK_10175 0.90 -0.6 2,194,329 + rseP OKGIIK_10175 0.90 +0.2 2,194,332 + rseP OKGIIK_10175 0.90 -0.9 2,194,392 + -0.2 2,194,392 + +0.1 2,194,437 + -0.1 2,194,437 + -0.4 2,194,437 + -1.4 2,194,437 + -0.8 2,194,437 + -1.1 2,194,470 + +1.0
Or see this region's nucleotide sequence